ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60d07 |
|---|---|
| Clone Library Name | barley_pub |
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 67.8 bits (164), Expect = 1e-11 Identities = 47/105 (44%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Frame = +1 Query: 97 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 264 MEDERSTQSYQG EA +QVEVTDR VTGM Sbjct: 1 MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60 Query: 265 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENGEVI 396 DGEKKETLFSKLHR VID+NGEVI Sbjct: 61 KKEEHEDGEKKETLFSKLHR-SSSSSSSSSDEEEEEVIDDNGEVI 104
>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) (mDia3) Length = 1098 Score = 31.2 bits (69), Expect = 1.1 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -3 Query: 169 GPCPSPPPDRPQLPGMTGCSSHPP 98 GPCP PPP P P + G PP Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -3 Query: 166 PCPSPPPDRPQLPGMTGCSSHPP 98 P P PPP P LPG T S PP Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623
>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 881 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -1 Query: 93 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 4 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318
>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 878 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%) Frame = -1 Query: 93 RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 4 R+ S LK T+GS +K+ +S DYW+L+CG L Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317
>ETBR2_HUMAN (O60883) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) Length = 481 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 47 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 139 C+ LP +F+ T + +WR+RG P E R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKSECR 346
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%) Frame = -3 Query: 166 PCPSPPPD----RPQLPGMTGCSSHPP 98 PCPSPPP P P + C S PP Sbjct: 87 PCPSPPPKPQPKPPPAPSPSPCPSPPP 113
>ETBR2_RAT (Q9QYC5) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) (G-protein coupled receptor CNS2) Length = 481 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 47 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 139 C+ LP +F+ T + +WR+RG P E R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKPECR 346
>ETBR2_MOUSE (Q99JG2) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)| (G-protein coupled receptor 37-like 1) Length = 481 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 47 CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 139 C+ LP +F+ T + +WR+RG P E R Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKPECR 346
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = -3 Query: 166 PCPSPPPDR-PQLPGMTGCSSHPP*SR 89 P P PPP R P PGM G PP SR Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSR 324
>ZCHC8_XENLA (Q6DD45) Zinc finger CCHC domain-containing protein 8| Length = 743 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -3 Query: 166 PCPSPPPDRPQLPGMTGCSSHPP*SRSVGAAKDSWELEKTADQQRLL 26 P P+PPP P T P V +D+W LE+ ++QRLL Sbjct: 488 PTPTPPPLPKGTPPPTPNRDSPKVPPQV-LDEDTWTLEELEEKQRLL 533
>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)| (Basic transcription element-binding protein 3) (BTE-binding protein 3) (RANTES factor of late activated T-lymphocytes 1) (RFLAT-1) (Erythroid transcription factor FKLF-2) Length = 289 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Frame = -3 Query: 178 CRVGPCPSPPPDRPQ--LPGMTGCSSHPP 98 CR+ P P PP P+ PG G + PP Sbjct: 95 CRLPPAPPAPPPGPEPASPGQAGAPAAPP 123
>SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Forced expression| inhibition of growth A) Length = 1790 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -3 Query: 160 PSPPPDRPQLPGMTGCSSHPP 98 P PPP P PG++G + PP Sbjct: 1017 PPPPPPPPAHPGLSGAAPPPP 1037
>SODE_MOUSE (O09164) Extracellular superoxide dismutase [Cu-Zn] precursor (EC| 1.15.1.1) (EC-SOD) Length = 251 Score = 28.1 bits (61), Expect = 9.2 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -3 Query: 178 CRVGPCPSPPPDRPQLPGM 122 CRV P + PPD+PQ+ G+ Sbjct: 77 CRVQPSATLPPDQPQITGL 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,208,028 Number of Sequences: 219361 Number of extensions: 479117 Number of successful extensions: 2750 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2672 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
