ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60d01 |
|---|---|
| Clone Library Name | barley_pub |
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 181 bits (460), Expect = 6e-46 Identities = 89/153 (58%), Positives = 116/153 (75%), Gaps = 2/153 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++ DEKL+E+F+ FGT+TS KVMRD NG S+GSGFVAF + ++A+ A+++++ KM+ + Sbjct: 326 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 385 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQ-PPA 356 KPLYVA+AQRKEDR+ RLQAQFSQ+RPV M +VGPRM + PPG P +GQQMFYGQ PPA Sbjct: 386 KPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPA 445 Query: 357 FINPQPGFGFQQXXXXXXXXXXXXXXNFMMPMV 455 I PQPG+G+QQ +F MPMV Sbjct: 446 MIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMV 478 Score = 73.2 bits (178), Expect = 3e-13 Identities = 33/83 (39%), Positives = 52/83 (62%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 ++ D+ L+ F E+G ITS VM+D G S+G GFV F++ DDA+RA+ +N +K Sbjct: 224 ESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283 Query: 186 PLYVALAQRKEDRKARLQAQFSQ 254 YV AQ+K +R+ L+ ++ Q Sbjct: 284 EWYVGRAQKKSERETELRVRYEQ 306 Score = 64.3 bits (155), Expect = 1e-10 Identities = 27/74 (36%), Positives = 49/74 (66%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+++D + L + F+ FG I SCKV DS+G S+G GFV + + + A +A+ ++N ++ + Sbjct: 132 DESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLND 191 Query: 183 KPLYVALAQRKEDR 224 K +YV R+++R Sbjct: 192 KQVYVGPFLRRQER 205 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D V D +L + F + GT+ + +V RD S G G+V F + DA+RA+ E+N + Sbjct: 44 DFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLY 103 Query: 180 NKPLYVALAQR 212 KP+ V + R Sbjct: 104 GKPIRVMYSHR 114
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 130 bits (327), Expect = 2e-30 Identities = 75/132 (56%), Positives = 96/132 (72%), Gaps = 3/132 (2%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD+VDDEKL+E+F+E+G +TS KVM + G SRG GFVA+ + ++A RAL+EMN KM+G Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMR-PVPMAQTVGPRMQMLPPGVPVGQQMFYGQPPAF 359 KPLY+ALAQRKEDR+A LQA FSQ+R P PM+ P + PG P Q M+ GQ A Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPM-PGPP--QHMYVGQNGAS 456 Query: 360 INP-QP-GFGFQ 389 + P QP G+GFQ Sbjct: 457 MVPSQPIGYGFQ 468 Score = 69.3 bits (168), Expect = 4e-12 Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 12/137 (8%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 + +++LR+ F +FG I+S VMRD +G SR GFV F+ + A+ A+ +MN +G+ L Sbjct: 240 IGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVL 299 Query: 192 YVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVG----QQMF--YG--- 344 YV AQ+K +R+ L+ +F Q R ++ G + + V ++MF YG Sbjct: 300 YVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVT 359 Query: 345 QPPAFINPQ---PGFGF 386 +NPQ GFGF Sbjct: 360 SSKVMLNPQGMSRGFGF 376 Score = 61.2 bits (147), Expect = 1e-09 Identities = 28/74 (37%), Positives = 47/74 (63%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L E F+ FGTI SCKV D G S+G GFV F+ + A A+ ++N ++ + Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203 Query: 183 KPLYVALAQRKEDR 224 K ++V R+++R Sbjct: 204 KQVFVGHFIRRQER 217 Score = 43.1 bits (100), Expect = 3e-04 Identities = 24/81 (29%), Positives = 41/81 (50%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V + L +LF + S +V RD N S G ++ F + +DA RA+ +N + + Sbjct: 57 DPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFD 116 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 +P+ + L+ R D RL + Sbjct: 117 RPIRIMLSNR--DPSTRLSGK 135
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 122 bits (305), Expect = 6e-28 Identities = 69/137 (50%), Positives = 93/137 (67%), Gaps = 8/137 (5%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD+V+DEKL+E+F+E+G +TSCKVM +S G SRG GFVA+ + ++A A+ EMN KM+G Sbjct: 336 DDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGR 395 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMR-PVPMAQTVGPR--MQMLPPGVPVG---QQMFYG 344 KPLYVALAQRKE+R+A LQ+ F+Q+R P M+ P PPG P+ MF G Sbjct: 396 KPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIG 455 Query: 345 QPPAFINP-QP-GFGFQ 389 + P QP G+G+Q Sbjct: 456 HNGQGLVPSQPMGYGYQ 472 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/83 (40%), Positives = 53/83 (63%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 + D++L++ F ++G I+S VM+D +G SR GFV F S + A+ A+ +MN +G L Sbjct: 236 ITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 295 Query: 192 YVALAQRKEDRKARLQAQFSQMR 260 YV AQ+K DR+ L+ +F Q R Sbjct: 296 YVGRAQKKSDREEELRRKFEQER 318 Score = 62.0 bits (149), Expect = 7e-10 Identities = 29/74 (39%), Positives = 47/74 (63%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L E F+ FGTI SCKV D G S+G GFV F+ + A A+ ++N ++ + Sbjct: 140 DASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLND 199 Query: 183 KPLYVALAQRKEDR 224 K ++V R++DR Sbjct: 200 KQVFVGHFVRRQDR 213 Score = 44.7 bits (104), Expect = 1e-04 Identities = 24/81 (29%), Positives = 44/81 (54%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +V++ L +LF + + + +V RD S G +V F + +DASRA+ +N + + Sbjct: 53 DPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNYAPIRD 112 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 +P+ + L+ R D RL + Sbjct: 113 RPIRIMLSNR--DPSTRLSGK 131
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 105 bits (263), Expect = 4e-23 Identities = 63/128 (49%), Positives = 85/128 (66%), Gaps = 9/128 (7%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DDT+DDEKLR+ F+ FG+ITS KVM + +G S+G GFV F S ++A++A+ EMN ++VG+ Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQ----MRPVPMAQTVGPRMQ-----MLPPGVPVGQQM 335 KPLYVALAQRKE+RKA L Q+ Q MR +P A + + Q P VP Q Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALP-ANAILNQFQPAAGGYFVPAVPQAQ-- 417 Query: 336 FYGQPPAF 359 G+PP + Sbjct: 418 --GRPPYY 423 Score = 88.2 bits (217), Expect = 9e-18 Identities = 40/85 (47%), Positives = 62/85 (72%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + VDDE L+ELF++FG S KVMRD NG S+G GFV+++ +DA++A+ EMN K + K Sbjct: 200 EEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 ++V AQ+K +R+A L+ +F Q++ Sbjct: 260 IIFVGRAQKKVERQAELKRKFEQLK 284 Score = 60.1 bits (144), Expect = 3e-09 Identities = 29/88 (32%), Positives = 56/88 (63%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L + F+ FG I SCKV+ D NG S+G FV F++ + A +A+ +MN ++ + Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + +++R+A L A+ + V Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNV 193 Score = 38.5 bits (88), Expect = 0.008 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V + L E F+ G + S +V RD S G +V F+ DA RAL MN ++ KP Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81 Query: 189 LYVALAQR 212 + + +QR Sbjct: 82 IRIMWSQR 89
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 104 bits (260), Expect = 9e-23 Identities = 61/136 (44%), Positives = 78/136 (57%), Gaps = 12/136 (8%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD+VDDEKL E FA +GTITS KVMR NG S+G GFV F + ++A++A+ E N ++V Sbjct: 329 DDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG 388 Query: 183 KPLYVALAQRKEDRK--------ARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQMF 338 KPLYVA+AQRK+ R+ AR Q ++ Q A G Q +PP MF Sbjct: 389 KPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPP-------MF 441 Query: 339 YGQPP----AFINPQP 374 YG P F P P Sbjct: 442 YGVMPPRGVPFNGPNP 457 Score = 65.9 bits (159), Expect = 5e-11 Identities = 33/90 (36%), Positives = 55/90 (61%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 DE+ +ELFA+FG I S + +D++G +G GFV ++ +DA +A+ +N+ + + LYV Sbjct: 231 DEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV 290 Query: 198 ALAQRKEDRKARLQAQFSQMRPVPMAQTVG 287 AQ+K +R L+ Q+ R MA+ G Sbjct: 291 GRAQKKNERMHVLKKQYEAYRLEKMAKYQG 320 Score = 53.5 bits (127), Expect = 2e-07 Identities = 25/76 (32%), Positives = 45/76 (59%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +D++ L + F+ FG I S K+ D NG S+G GFV F+ A A+ +N ++ + + Sbjct: 136 IDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 195 Query: 192 YVALAQRKEDRKARLQ 239 YVA +++R ++L+ Sbjct: 196 YVAPHLSRKERDSQLE 211
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 103 bits (257), Expect = 2e-22 Identities = 52/101 (51%), Positives = 69/101 (68%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DDT+DD++LR F+ +G ITS KVM D G S+G GFV F + +A+ A+ E+N ++VG+ Sbjct: 295 DDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGS 354 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQML 305 KPLYVALAQRKE+RKA L +Q+ M G RMQ L Sbjct: 355 KPLYVALAQRKEERKAHLASQY-------MRHMTGMRMQQL 388 Score = 75.1 bits (183), Expect = 8e-14 Identities = 38/83 (45%), Positives = 56/83 (67%), Gaps = 1/83 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVG-NKPL 191 DDEKL+E F +G ITS KVM +G S+G GFVAF++ + A A+ +N K +G K L Sbjct: 195 DDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSL 254 Query: 192 YVALAQRKEDRKARLQAQFSQMR 260 YVA AQ+K +R+ L+ +F +++ Sbjct: 255 YVARAQKKAERQQELKRKFEELK 277 Score = 55.5 bits (132), Expect = 6e-08 Identities = 25/78 (32%), Positives = 47/78 (60%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D++ + + F+ FG I SCKV D G S+G GFV F++ + A+ ++ ++N ++ Sbjct: 98 DRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNG 157 Query: 183 KPLYVALAQRKEDRKARL 236 K +YV +++R+ L Sbjct: 158 KKVYVGKFIPRKEREKEL 175 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V++ L + F+ G + S +V RD S G +V F+ DA RAL MN +V NKP Sbjct: 13 VNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKP 72 Query: 189 LYVALAQR 212 + + +QR Sbjct: 73 IRIMWSQR 80
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 99.4 bits (246), Expect = 4e-21 Identities = 60/138 (43%), Positives = 82/138 (59%), Gaps = 8/138 (5%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DD++LR+ F+ +GTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQ----MRPVP---MAQTVGPRMQMLPPGVPVGQQMFY 341 KPLYVALAQRKE+RKA L Q+ Q MR +P + P LP + FY Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFY 420 Query: 342 G-QPPAFINPQPGFGFQQ 392 P A + P P + Q Sbjct: 421 SPNPVAPVRPAPQWASHQ 438 Score = 76.3 bits (186), Expect = 4e-14 Identities = 34/85 (40%), Positives = 59/85 (69%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DD++L+E+F+ FG S KVM D++G SRG GFV + + ++A +A+ EMN K V + Sbjct: 200 EDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGR 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 +YV AQ++ +R+ L+ +F Q++ Sbjct: 260 MVYVGRAQKRIERQGELKRKFEQIK 284 Score = 58.9 bits (141), Expect = 6e-09 Identities = 30/88 (34%), Positives = 54/88 (61%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD++D++ L + F+ FG I SCKV+ D G SRG GFV F++ + A+RA+ MN ++ + Sbjct: 107 DDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + + +R+ A+ + V Sbjct: 166 RKVFVGHFKSRRERELEYGAKVMEFTNV 193
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 99.0 bits (245), Expect = 5e-21 Identities = 54/111 (48%), Positives = 72/111 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DDE+LR+ F+ FGTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQM 335 KPLYVALAQRKE+R+A L Q+ Q R + P + P P G M Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ-RMASVRAVPNPVINPYQPAPPSGYFM 410 Score = 84.3 bits (207), Expect = 1e-16 Identities = 39/85 (45%), Positives = 59/85 (69%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DDE+L+ELF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN K + K Sbjct: 200 EDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 +YV AQ+K +R+ L+ +F QM+ Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMK 284 Score = 63.5 bits (153), Expect = 2e-10 Identities = 31/88 (35%), Positives = 57/88 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN ++ + Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + +++R+A L A+ + V Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNV 193 Score = 38.5 bits (88), Expect = 0.008 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V + L E F+ G I S +V RD S G +V F+ DA RAL MN ++ KP Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81 Query: 189 LYVALAQR 212 + + +QR Sbjct: 82 VRIMWSQR 89
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 99.0 bits (245), Expect = 5e-21 Identities = 54/111 (48%), Positives = 72/111 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DDE+LR+ F+ FGTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQM 335 KPLYVALAQRKE+R+A L Q+ Q R + P + P P G M Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ-RMASVRAVPNPVINPYQPAPPSGYFM 410 Score = 84.3 bits (207), Expect = 1e-16 Identities = 39/85 (45%), Positives = 59/85 (69%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DDE+L+ELF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN K + K Sbjct: 200 EDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 +YV AQ+K +R+ L+ +F QM+ Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMK 284 Score = 63.2 bits (152), Expect = 3e-10 Identities = 31/88 (35%), Positives = 57/88 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN ++ + Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + +++R+A L A+ + V Sbjct: 166 RKVFVGRFKSQKEREAELGARAKEFTNV 193 Score = 38.5 bits (88), Expect = 0.008 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V + L E F+ G I S +V RD S G +V F+ DA RAL MN ++ KP Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81 Query: 189 LYVALAQR 212 + + +QR Sbjct: 82 VRIMWSQR 89
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 99.0 bits (245), Expect = 5e-21 Identities = 54/111 (48%), Positives = 72/111 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DDE+LR+ F+ FGTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQM 335 KPLYVALAQRKE+R+A L Q+ Q R + P + P P G M Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ-RMASVRAVPNPVINPYQPAPPSGYFM 410 Score = 83.2 bits (204), Expect = 3e-16 Identities = 38/85 (44%), Positives = 59/85 (69%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DDE+L++LF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN K + K Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 +YV AQ+K +R+ L+ +F QM+ Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMK 284 Score = 63.5 bits (153), Expect = 2e-10 Identities = 31/88 (35%), Positives = 57/88 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN ++ + Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + +++R+A L A+ + V Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNV 193 Score = 38.5 bits (88), Expect = 0.008 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V + L E F+ G I S +V RD S G +V F+ DA RAL MN ++ KP Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81 Query: 189 LYVALAQR 212 + + +QR Sbjct: 82 VRIMWSQR 89
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 99.0 bits (245), Expect = 5e-21 Identities = 54/111 (48%), Positives = 72/111 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DDE+LR+ F+ FGTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQM 335 KPLYVALAQRKE+R+A L Q+ Q R + P + P P G M Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ-RMASVRAVPNPVINPYQPAPPSGYFM 410 Score = 83.2 bits (204), Expect = 3e-16 Identities = 38/85 (44%), Positives = 59/85 (69%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DDE+L++LF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN K + K Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 +YV AQ+K +R+ L+ +F QM+ Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMK 284 Score = 63.5 bits (153), Expect = 2e-10 Identities = 31/88 (35%), Positives = 57/88 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN ++ + Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + +++R+A L A+ + V Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNV 193 Score = 38.5 bits (88), Expect = 0.008 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V + L E F+ G I S +V RD S G +V F+ DA RAL MN ++ KP Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81 Query: 189 LYVALAQR 212 + + +QR Sbjct: 82 VRIMWSQR 89
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 98.2 bits (243), Expect = 9e-21 Identities = 56/118 (47%), Positives = 72/118 (61%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DDE+LR+ F FGTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQMFYGQPPA 356 KPLYVALAQRKE+R+A L Q+ Q MA P + P P PPA Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQR----MASVRVPNPVINPYQPPPSSYFMAAIPPA 414 Score = 82.0 bits (201), Expect = 6e-16 Identities = 37/85 (43%), Positives = 59/85 (69%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D ++DE+L+E+F ++G S KVM D NG S+G GFV+F+ +DA +A+ EMN K + K Sbjct: 200 DDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 ++V AQ+K +R+ L+ +F QM+ Sbjct: 260 SMFVGRAQKKVERQTELKRKFEQMK 284 Score = 63.2 bits (152), Expect = 3e-10 Identities = 31/88 (35%), Positives = 57/88 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN ++ + Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + +++R+A L A+ + V Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNV 193
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 97.1 bits (240), Expect = 2e-20 Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 7/131 (5%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DDE+LR+ F+ FGTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQ----MRPVPMAQTVGPRMQMLPPGVPVGQQMFYGQP 350 KPLYVALAQRKE+R+A L ++ Q +R VP + P VP Q P Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQR--APPSGYFMTAVPQTQNHAAYYP 418 Query: 351 P---AFINPQP 374 P A + P P Sbjct: 419 PSQIARLRPSP 429 Score = 82.4 bits (202), Expect = 5e-16 Identities = 38/85 (44%), Positives = 58/85 (68%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DDE+L++LF +FG S KVM D +G S+G GFV+F+ +DA +A+ EMN K + K Sbjct: 200 EDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 +YV AQ+K +R+ L+ F QM+ Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMK 284 Score = 55.8 bits (133), Expect = 5e-08 Identities = 27/81 (33%), Positives = 52/81 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +++++ L + + FG I SC V+ D NG S+G GFV F++ + A RA+ +MN ++ Sbjct: 107 DKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNG 165 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 + ++V + +++R+A L A+ Sbjct: 166 RKVFVGQFKSRKEREAELGAR 186
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 97.1 bits (240), Expect = 2e-20 Identities = 55/118 (46%), Positives = 72/118 (61%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DDE+LR+ F FG+ITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQMFYGQPPA 356 KPLYVALAQRKE+R+A L Q+ Q MA P + P P PPA Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQR----MASVRVPNPVINPYQPPPSSYFMAAIPPA 414 Score = 79.7 bits (195), Expect = 3e-15 Identities = 36/85 (42%), Positives = 58/85 (68%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DDE+L+E F ++G S KVM D +G SRG GFV+F+ +DA +A+ +MN K + K Sbjct: 200 EDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGK 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 ++V AQ+K +R+ L+ +F QM+ Sbjct: 260 AIFVGRAQKKVERQTELKRKFEQMK 284 Score = 63.2 bits (152), Expect = 3e-10 Identities = 31/88 (35%), Positives = 57/88 (64%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D++ L + F+ FG I SCKV+ D NG S+G GFV F++ + A RA+ +MN ++ + Sbjct: 107 DKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + +++R+A L A+ + V Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNV 193 Score = 38.5 bits (88), Expect = 0.008 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V + L E F+ G I S +V RD S G +V F+ DA RAL MN ++ KP Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81 Query: 189 LYVALAQR 212 + + +QR Sbjct: 82 VRIMWSQR 89
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 96.7 bits (239), Expect = 3e-20 Identities = 46/93 (49%), Positives = 65/93 (69%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D VDDE+L+ F+ FGTITS K+M D G S+G GFV + + ++A++A+ EMN +M+ K Sbjct: 373 DEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMAQTV 284 PLYVALAQRKE R+++L+AQ + Q V Sbjct: 433 PLYVALAQRKEVRRSQLEAQIQARNQFRLQQQV 465 Score = 68.2 bits (165), Expect = 1e-11 Identities = 31/86 (36%), Positives = 54/86 (62%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D + +++ +LF +FG ITS +++D N RG GFV + + + A +A+ E+N+K Sbjct: 269 DTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKG 328 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMR 260 K LYV AQ+K +R+ L+ ++ QM+ Sbjct: 329 KKLYVGRAQKKHEREEELRKRYEQMK 354 Score = 61.6 bits (148), Expect = 9e-10 Identities = 28/80 (35%), Positives = 50/80 (62%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D++ L + F+ FG I SCKV D G ++G GFV F SV+ A+ A+ +N ++ + Sbjct: 176 DPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLND 235 Query: 183 KPLYVALAQRKEDRKARLQA 242 K +YV + +R+++++A Sbjct: 236 KKVYVGHHVSRRERQSKVEA 255 Score = 43.1 bits (100), Expect = 3e-04 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D +V + L ELF G + S +V RD+ S G +V F +++D +AL E+N ++ Sbjct: 88 DPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIK 147 Query: 180 NKPLYVALAQR 212 +P + +QR Sbjct: 148 GRPCRIMWSQR 158
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 96.3 bits (238), Expect = 3e-20 Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 7/124 (5%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DD++LR+ F+ +GTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQ----MRPVP---MAQTVGPRMQMLPPGVPVGQQMFY 341 KPLYVALAQRKE+RKA L Q+ Q MR +P + P LP + FY Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFY 420 Query: 342 GQPP 353 P Sbjct: 421 SPNP 424 Score = 77.4 bits (189), Expect = 2e-14 Identities = 35/85 (41%), Positives = 58/85 (68%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DD++LRE+F+ FG S KVM D G SRG GFV + + ++A +A++EMN K V + Sbjct: 200 EDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 +YV AQ++ +R+ L+ +F Q++ Sbjct: 260 MIYVGRAQKRIERQGELKRKFEQIK 284 Score = 58.9 bits (141), Expect = 6e-09 Identities = 29/88 (32%), Positives = 55/88 (62%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+++D++ L + F+ FG I SCKV+ D +G SRG GFV F++ + A+RA+ MN ++ + Sbjct: 107 DESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + + +R+ A+ + V Sbjct: 166 RKVFVGHFKSRRERELEYGAKVMEFTNV 193
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 95.9 bits (237), Expect = 4e-20 Identities = 58/140 (41%), Positives = 81/140 (57%), Gaps = 10/140 (7%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 DD +DD++LR+ F +GTITS KVM + G S+G GFV F S ++A++A+ EMN ++V Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360 Query: 183 KPLYVALAQRKEDRKARLQAQFSQ----MRPVP------MAQTVGPRMQMLPPGVPVGQQ 332 KPLYVALAQRKE+RKA L Q+ Q MR +P Q + +P P + Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLSAMPQ--PPNRT 418 Query: 333 MFYGQPPAFINPQPGFGFQQ 392 + P A + P P + Q Sbjct: 419 FYSPNPVAPVRPAPQWASHQ 438 Score = 78.2 bits (191), Expect = 9e-15 Identities = 35/85 (41%), Positives = 60/85 (70%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + +DD++LRE+F+ FG S KVM D +G SRG GFV + + ++A +A++EMN K V + Sbjct: 200 EDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259 Query: 186 PLYVALAQRKEDRKARLQAQFSQMR 260 +YV AQ++ +R++ L+ +F Q++ Sbjct: 260 MIYVGRAQKRIERQSELKRKFEQIK 284 Score = 58.5 bits (140), Expect = 8e-09 Identities = 29/88 (32%), Positives = 55/88 (62%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+++D++ L + F+ FG I SCKV+ D +G SRG GFV F++ + A+RA+ MN ++ + Sbjct: 107 DESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLND 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPV 266 + ++V + + +R+ A+ + V Sbjct: 166 RKVFVGHFKSRRERELEYGAKVMEFTNV 193
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/106 (39%), Positives = 68/106 (64%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D +DDEKL+ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ K + K Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPV 323 LYV AQ+K +R A L+ +F ++R + + PPGVP+ Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLR---------LKEKSRPPGVPI 304 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/71 (46%), Positives = 52/71 (73%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+T++DEKL+E F+ FG+I+ KVM + G +G G V F S ++A++A+ EMN ++VG+ Sbjct: 310 DETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGS 368 Query: 183 KPLYVALAQRK 215 KPL+V L Q + Sbjct: 369 KPLHVTLGQAR 379 Score = 57.8 bits (138), Expect = 1e-08 Identities = 31/81 (38%), Positives = 49/81 (60%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D+ L LF+ FG I SCKV+ D NG S+G +V F S+ A+RA+ MN + N Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNN 172 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 + +YV + E+R A ++ + Sbjct: 173 RQVYVGRFKFPEERAAEVRTR 193 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASR-GSGFVAFKSVDDASRALAEMNNKMVG 179 D V ++ L + F G + ++ RD S G G+V F+ DA AL MN ++ Sbjct: 26 DPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLIN 85 Query: 180 NKPLYVALAQ 209 KP + +Q Sbjct: 86 GKPFRLMWSQ 95
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/106 (39%), Positives = 68/106 (64%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D +DDEKL+ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ K + K Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPV 323 LYV AQ+K +R A L+ +F ++R + + PPGVP+ Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLR---------LKEKSRPPGVPI 304 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/71 (46%), Positives = 52/71 (73%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+T++DEKL+E F+ FG+I+ KVM + G +G G V F S ++A++A+ EMN ++VG+ Sbjct: 310 DETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGS 368 Query: 183 KPLYVALAQRK 215 KPL+V L Q + Sbjct: 369 KPLHVTLGQAR 379 Score = 57.8 bits (138), Expect = 1e-08 Identities = 31/81 (38%), Positives = 49/81 (60%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D+ L LF+ FG I SCKV+ D NG S+G +V F S+ A+RA+ MN + N Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNN 172 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 + +YV + E+R A ++ + Sbjct: 173 RQVYVGRFKFPEERAAEVRTR 193 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASR-GSGFVAFKSVDDASRALAEMNNKMVG 179 D V ++ L + F G + ++ RD S G G+V F+ DA AL MN ++ Sbjct: 26 DPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLIN 85 Query: 180 NKPLYVALAQ 209 KP + +Q Sbjct: 86 GKPFRLMWSQ 95
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/106 (39%), Positives = 68/106 (64%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D +DDEKL+ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ K + K Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPV 323 LYV AQ+K +R A L+ +F ++R + + PPGVP+ Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLR---------LKEKSRPPGVPI 304 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/71 (46%), Positives = 52/71 (73%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+T++DEKL+E F+ FG+I+ KVM + G +G G V F S ++A++A+ EMN ++VG+ Sbjct: 310 DETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRVVGS 368 Query: 183 KPLYVALAQRK 215 KPL+V L Q + Sbjct: 369 KPLHVTLGQAR 379 Score = 57.8 bits (138), Expect = 1e-08 Identities = 31/81 (38%), Positives = 49/81 (60%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D+ L LF+ FG I SCKV+ D NG S+G +V F S+ A+RA+ MN + N Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNN 172 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 + +YV + E+R A ++ + Sbjct: 173 RQVYVGRFKFPEERAAEVRTR 193 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASR-GSGFVAFKSVDDASRALAEMNNKMVG 179 D V ++ L + F G + ++ RD S G G+V F+ DA AL MN ++ Sbjct: 26 DPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLIN 85 Query: 180 NKPLYVALAQ 209 KP + +Q Sbjct: 86 GKPFRLMWSQ 95
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/106 (39%), Positives = 68/106 (64%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D +DDEKL+ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ K + K Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPV 323 LYV AQ+K +R A L+ +F ++R + + PPGVP+ Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLR---------LKEKSRPPGVPI 304 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/71 (46%), Positives = 52/71 (73%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+T++DEKL+E F+ FG+I+ KVM + G +G G V F S ++A++A+ EMN ++VG+ Sbjct: 310 DETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGS 368 Query: 183 KPLYVALAQRK 215 KPL+V L Q + Sbjct: 369 KPLHVTLGQAR 379 Score = 57.8 bits (138), Expect = 1e-08 Identities = 31/81 (38%), Positives = 49/81 (60%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D+ L LF+ FG I SCKV+ D NG S+G +V F S+ A+RA+ MN + N Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNN 172 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 + +YV + E+R A ++ + Sbjct: 173 RQVYVGRFKFPEERAAEVRTR 193 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASR-GSGFVAFKSVDDASRALAEMNNKMVG 179 D V ++ L + F G + ++ RD S G G+V F+ DA AL MN ++ Sbjct: 26 DPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLIN 85 Query: 180 NKPLYVALAQ 209 KP + +Q Sbjct: 86 GKPFRLMWSQ 95
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/106 (39%), Positives = 68/106 (64%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D +DDEKL+ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ K + K Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPV 323 LYV AQ+K +R A L+ +F ++R + + PPGVP+ Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLR---------LKEKSRPPGVPI 304 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/71 (46%), Positives = 52/71 (73%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+T++DEKL+E F+ FG+I+ KVM + G +G G V F S ++A++A+ EMN ++VG+ Sbjct: 310 DETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGS 368 Query: 183 KPLYVALAQRK 215 KPL+V L Q + Sbjct: 369 KPLHVTLGQAR 379 Score = 57.8 bits (138), Expect = 1e-08 Identities = 31/81 (38%), Positives = 49/81 (60%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D+ L LF+ FG I SCKV+ D NG S+G +V F S+ A+RA+ MN + N Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNN 172 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 + +YV + E+R A ++ + Sbjct: 173 RQVYVGRFKFPEERAAEVRTR 193 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASR-GSGFVAFKSVDDASRALAEMNNKMVG 179 D V ++ L + F G + ++ RD S G G+V F+ DA AL MN ++ Sbjct: 26 DPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLIN 85 Query: 180 NKPLYVALAQ 209 KP + +Q Sbjct: 86 GKPFRLMWSQ 95
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 84.3 bits (207), Expect = 1e-16 Identities = 42/106 (39%), Positives = 68/106 (64%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D +DDEKL+ELF E+G S KV+RD++G S+G GFV +++ + A +A+ +++ K + K Sbjct: 208 DDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPV 323 LYV AQ+K +R A L+ +F ++R + + PPGVP+ Sbjct: 268 VLYVGRAQKKIERLAELRRRFERLR---------LKEKSRPPGVPI 304 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/71 (46%), Positives = 52/71 (73%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+T++DEKL+E F+ FG+I+ KVM + G +G G V F S ++A++A+ EMN ++VG+ Sbjct: 310 DETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMNGRIVGS 368 Query: 183 KPLYVALAQRK 215 KPL+V L Q + Sbjct: 369 KPLHVTLGQAR 379 Score = 57.8 bits (138), Expect = 1e-08 Identities = 31/81 (38%), Positives = 49/81 (60%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++D+ L LF+ FG I SCKV+ D NG S+G +V F S+ A+RA+ MN + N Sbjct: 114 DKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNN 172 Query: 183 KPLYVALAQRKEDRKARLQAQ 245 + +YV + E+R A ++ + Sbjct: 173 RQVYVGRFKFPEERAAEVRTR 193 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASR-GSGFVAFKSVDDASRALAEMNNKMVG 179 D V ++ L + F G + ++ RD S G G+V F+ DA AL MN ++ Sbjct: 26 DPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLIN 85 Query: 180 NKPLYVALAQ 209 KP + +Q Sbjct: 86 GKPFRLMWSQ 95
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 81.3 bits (199), Expect = 1e-15 Identities = 40/79 (50%), Positives = 56/79 (70%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 V +E+LR+ F++ GTITS K+M D G S+G GFV F + ++A A+ + +M KPL Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374 Query: 192 YVALAQRKEDRKARLQAQF 248 YVA+AQ+KEDRK +LQ QF Sbjct: 375 YVAIAQKKEDRKMQLQVQF 393 Score = 68.6 bits (166), Expect = 7e-12 Identities = 36/84 (42%), Positives = 49/84 (58%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V ++ LRE FAEFG I S + +D N RG FV F + +DA RA +N G+ Sbjct: 209 DADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGS 268 Query: 183 KPLYVALAQRKEDRKARLQAQFSQ 254 K LYV AQ+K +R+ L+ QF + Sbjct: 269 KCLYVGRAQKKAEREQLLREQFKE 292 Score = 60.1 bits (144), Expect = 3e-09 Identities = 29/73 (39%), Positives = 45/73 (61%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 ++V + L+++F +FG I SCKV +G SRG GFV F+ D A A+ +N+ +V +K Sbjct: 121 ESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADK 180 Query: 186 PLYVALAQRKEDR 224 +YV +K DR Sbjct: 181 EIYVGKFMKKTDR 193
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 65.1 bits (157), Expect = 8e-11 Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 3/86 (3%) Frame = +3 Query: 3 DDTVDDEK--LRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKM 173 DDTV K L +LF+ FG+I S + N G S+G GFVAF+ ++ A RA +N M Sbjct: 390 DDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMM 449 Query: 174 VGNKPLYVALAQRKEDRKARLQAQFS 251 VG K ++V A+RK DR RLQA F+ Sbjct: 450 VGKKRIFVCFAERKSDRIRRLQAFFA 475
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 57.0 bits (136), Expect = 2e-08 Identities = 26/65 (40%), Positives = 42/65 (64%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 V+DE L + F+E+ ++ KV+RD G +RG GFV+FK D +A E N K +G++P+ Sbjct: 41 VNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPV 100 Query: 192 YVALA 206 ++ A Sbjct: 101 KLSRA 105
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 56.6 bits (135), Expect = 3e-08 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D VD+ L + F+ G + +V RD NG S+G GFV++ S + A A+ MNN+ + Sbjct: 107 DPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLM 166 Query: 180 NKPLYVALAQRKEDRKAR 233 NKP+ V+ A ++E + R Sbjct: 167 NKPITVSYAFKREGKGER 184
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 53.1 bits (126), Expect = 3e-07 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VDDE LR F +F + S VM D G+SRG GFV+F S DDA A+ M + + +P Sbjct: 172 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 231 Query: 189 LYVALAQRKED 221 L + A ++++ Sbjct: 232 LRINWAAKRDN 242 Score = 36.6 bits (83), Expect = 0.031 Identities = 18/60 (30%), Positives = 30/60 (50%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D + ++ L++ F G I + K+M D N + FV + DA+ AL +N K + N Sbjct: 82 DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN 141
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 52.4 bits (124), Expect = 5e-07 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 10/136 (7%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSC-KVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMV 176 D +D++ L + F+ FG I K+MRD + G S+G F+ F S D + A+ MN + + Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167 Query: 177 GNKPLYVALAQRKEDRKARLQAQFSQMRPV--PMAQTVGPRMQML----PPGV--PVGQQ 332 N+P+ V+ A +K+ + R + ++ P++Q P PP PV Sbjct: 168 CNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSS 227 Query: 333 MFYGQPPAFINPQPGF 380 + G PP + P F Sbjct: 228 LGSGLPPPGMPPPGSF 243 Score = 38.1 bits (87), Expect = 0.011 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D+ V + L ELF + G + + + +D G +G GFV F S +DA A+ MN + Sbjct: 21 DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLY 80 Query: 180 NKPLYV 197 KP+ V Sbjct: 81 GKPIRV 86
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 52.0 bits (123), Expect = 7e-07 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L ++F+++G I+ V++D SRG GFV F+++DDA A+ MN K V + + Sbjct: 18 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 192 YVALAQRKEDRKAR 233 V A + D ++R Sbjct: 78 RVDQAGKSSDNRSR 91
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 52.0 bits (123), Expect = 7e-07 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L ++F+++G I+ V++D SRG GFV F+++DDA A+ MN K V + + Sbjct: 18 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 192 YVALAQRKEDRKAR 233 V A + D ++R Sbjct: 78 RVDQAGKSSDNRSR 91
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 51.6 bits (122), Expect = 9e-07 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L ++F+++G I+ V++D SRG GFV F+++DDA A+ MN K V + + Sbjct: 18 NEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 192 YVALAQRKEDRKAR 233 V A + D ++R Sbjct: 78 RVDQAGKSSDNRSR 91
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 51.6 bits (122), Expect = 9e-07 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L ++F+++G I+ V++D SRG GFV F+++DDA A+ MN K V + + Sbjct: 18 NEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 192 YVALAQRKEDRKAR 233 V A + D ++R Sbjct: 78 RVDQAGKSSDNRSR 91
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 51.6 bits (122), Expect = 9e-07 Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L ++F+++G I+ V++D SRG GFV F+++DDA A+ MN K V + + Sbjct: 18 NEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 77 Query: 192 YVALAQRKEDRKAR 233 V A + D ++R Sbjct: 78 RVDQAGKSSDNRSR 91
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 51.2 bits (121), Expect = 1e-06 Identities = 25/68 (36%), Positives = 37/68 (54%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +EKLRE F++ G +T K+M+ NG SR F+ +KS D A RA+ N + + V Sbjct: 15 EEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARIEV 74 Query: 198 ALAQRKED 221 A+ D Sbjct: 75 EFAKTFSD 82 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +E R LF+++G + + D+ G S+G +V F +DA+RA ++ ++ + L+ Sbjct: 323 EEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLH 382 Query: 195 VALAQRKEDRK 227 + A +K+D + Sbjct: 383 ILPADKKKDHR 393 Score = 33.5 bits (75), Expect = 0.26 Identities = 17/62 (27%), Positives = 34/62 (54%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALA 206 L ELF FG + S +V + + ++RG FV F + +A A++++ + + L + A Sbjct: 733 LLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYA 792 Query: 207 QR 212 ++ Sbjct: 793 EQ 794
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNG-ASRGSGFVAFKSVDDASRALAEMNNKMVG 179 DE LRE F ++GT+T C VMRD N SRG GFV + S D+ A+ +K+ G Sbjct: 27 DESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDG 81
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/72 (37%), Positives = 39/72 (54%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 V DE+L + F+ F I V++D+N SRG GFV+F DD ALA+ L Sbjct: 37 VTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHIL 96 Query: 192 YVALAQRKEDRK 227 V +A+R++ K Sbjct: 97 RVDIAKRRDRSK 108
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/68 (33%), Positives = 48/68 (70%), Gaps = 1/68 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + +++L+++F++FGT+T ++MR+ ASRG GF++F +V++A+ A+ +N++ + Sbjct: 112 MQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRV 171 Query: 189 LYVALAQR 212 L V A+R Sbjct: 172 LNVQKAKR 179
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 50.4 bits (119), Expect = 2e-06 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 T+ D++L +F ++G+I ++RD G RG FV + ++A A++ +NN + G Sbjct: 221 TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 280 Query: 180 NKPLYVALAQRKEDRKARLQAQFSQMRPVP 269 ++PL V LA+ E KA+ SQM VP Sbjct: 281 SQPLSVRLAE--EHGKAKAAHFMSQMGVVP 308 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 D +L LF G I +C++MRD G S G FV F S D+ RA+ +N V NK L Sbjct: 138 DRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 197 Query: 195 VALAQ 209 V+ A+ Sbjct: 198 VSYAR 202
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 49.7 bits (117), Expect = 4e-06 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++ LR+ F+++G++ K++ D G S+G GFV F++ +DA + L E + Sbjct: 41 DFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKD 100 Query: 183 KPLYVALAQRKE 218 K L + A RK+ Sbjct: 101 KKLNIGPAIRKQ 112
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 49.7 bits (117), Expect = 4e-06 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++ LR+ F+++G++ K++ D G S+G GFV F++ +DA + L E + Sbjct: 41 DFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKD 100 Query: 183 KPLYVALAQRKE 218 K L + A RK+ Sbjct: 101 KKLNIGPAIRKQ 112
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 49.3 bits (116), Expect = 5e-06 Identities = 24/70 (34%), Positives = 40/70 (57%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 D +LRE F++ G +T K+MR +G SR GFV ++S +A +AL N + + + Sbjct: 15 DARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDYFNRTFIDTSRISI 74 Query: 198 ALAQRKEDRK 227 LA++ D + Sbjct: 75 ELAKKIGDEE 84 Score = 33.1 bits (74), Expect = 0.34 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVM------RDSNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 DE+L F ++ R S G GFV FKS+D A A M+ K++ Sbjct: 634 DERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTAQKAMDGKVLD 693 Query: 180 NKPLYVALAQRKED 221 L V A+R + Sbjct: 694 AHTLVVTFARRNAE 707 Score = 32.0 bits (71), Expect = 0.76 Identities = 16/78 (20%), Positives = 40/78 (51%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALA 206 +R+LF+ G + S ++ + + +RG GFV + +V +A A+ + + + + L + + Sbjct: 735 IRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQWS 794 Query: 207 QRKEDRKARLQAQFSQMR 260 + ++ Q S+ + Sbjct: 795 HLASSTQQQVDMQRSKTK 812
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 49.3 bits (116), Expect = 5e-06 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + D +L LF G I +C++MRD G S G GFV F S DA RA+ +N V NK Sbjct: 89 MQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKR 148 Query: 189 LYVALAQ 209 + V+ A+ Sbjct: 149 IKVSFAR 155 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 ++ DE+L +F ++G I ++RD + G RG F+ F ++A A++ +NN + G Sbjct: 174 SITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGG 233 Query: 180 NKPLYVALAQRKEDRKARL 236 +PL V +A+ K + Sbjct: 234 TQPLTVRVAEEHGKSKGHV 252
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 49.3 bits (116), Expect = 5e-06 Identities = 22/72 (30%), Positives = 41/72 (56%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D ++ LR+ F+++G++ K++ D G S+G GF+ F++ +DA + L E + Sbjct: 41 DFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAEKLNYKD 100 Query: 183 KPLYVALAQRKE 218 K L + A RK+ Sbjct: 101 KKLNIGPAIRKQ 112
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 49.3 bits (116), Expect = 5e-06 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 4/92 (4%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGA----SRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 +EKL+E+F++ GT+ SC + + N A S G GFV ++ + A +AL ++ +V Sbjct: 743 EEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGH 802 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMAQT 281 L V +++R L ++ + VP QT Sbjct: 803 KLEVRISERATKPAVTL----ARKKQVPRKQT 830 Score = 48.1 bits (113), Expect = 1e-05 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +E+ R+LFA FGT+T C + +G R GF+ FKS ++A +A N + + V Sbjct: 15 EERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFNKSFIDTSRITV 74 Query: 198 ALAQRKED-RKARLQAQFSQMRPVP 269 + D K R ++ +Q P Sbjct: 75 EFCKSFGDPAKPRAWSKHAQKPSQP 99
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 49.3 bits (116), Expect = 5e-06 Identities = 20/60 (33%), Positives = 34/60 (56%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 ++D+++L + FG + S +V+RDS+GASRG GF +S + + N K + P Sbjct: 151 SMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 48.5 bits (114), Expect = 8e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L +LF FG +T+ KV+RD + +G GFV + D+A+ A+A +N +G + L Sbjct: 296 DESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVL 355 Query: 192 YVALAQRKEDR 224 V+ K+ + Sbjct: 356 QVSFKTSKQHK 366 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 ++ + LF G I SCK++RD G S G GFV + +DA +A+ +N + K + V Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112 Query: 198 ALAQ 209 + A+ Sbjct: 113 SYAR 116 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 T+ +++ +LF+++G I + +++ D + G SRG GF+ F +A A+ +N G K Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLN----GQK 190 Query: 186 PLYVA 200 PL A Sbjct: 191 PLGAA 195
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 48.5 bits (114), Expect = 8e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L +LF FG +T+ KV+RD + +G GFV + D+A+ A+A +N +G + L Sbjct: 296 DESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVL 355 Query: 192 YVALAQRKEDR 224 V+ K+ + Sbjct: 356 QVSFKTSKQHK 366 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 ++ + LF G I SCK++RD G S G GFV + +DA +A+ +N + K + V Sbjct: 53 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV 112 Query: 198 ALAQ 209 + A+ Sbjct: 113 SYAR 116 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 T+ +++ +LF+++G I + +++ D G SRG GF+ F +A A+ +N G K Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN----GQK 190 Query: 186 PLYVA 200 PL A Sbjct: 191 PLGAA 195
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L ++F FG +T+ KV+RD N +G GFV + D+A+ A+A +N +G++ L Sbjct: 289 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 348 Query: 192 YVALAQRK 215 V+ K Sbjct: 349 QVSFKTNK 356 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 E+L+ LF G I SCK++RD G S G GFV + DA +A+ +N + K + V Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 198 ALAQ 209 + A+ Sbjct: 113 SYAR 116 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 T+ ++L +LF+++G I + +++ D G SRG GF+ F +A A+ +N + Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194 Query: 180 NKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 +P+ V A + QA SQ+ P + GP Q Sbjct: 195 TEPITVKFANNPSQKTN--QAILSQLYQSPNRRYPGPLAQ 232
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L ++F FG +T+ KV+RD N +G GFV + D+A+ A+A +N +G++ L Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347 Query: 192 YVALAQRK 215 V+ K Sbjct: 348 QVSFKTNK 355 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 E+L+ LF G I SCK++RD G S G GFV + DA +A+ +N + K + V Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 198 ALAQ 209 + A+ Sbjct: 113 SYAR 116 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 T+ ++L +LF+++G I + +++ D G SRG GF+ F +A A+ +N + Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194 Query: 180 NKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 +P+ V A + QA SQ+ P + GP Q Sbjct: 195 TEPITVKFANNPSQKTN--QAILSQLYQSPNRRYPGPLAQ 232
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L ++F FG +T+ KV+RD N +G GFV + D+A+ A+A +N +G++ L Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347 Query: 192 YVALAQRK 215 V+ K Sbjct: 348 QVSFKTNK 355 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 E+L+ LF G I SCK++RD G S G GFV + DA +A+ +N + K + V Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 198 ALAQ 209 + A+ Sbjct: 113 SYAR 116 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 T+ ++L +LF+++G I + +++ D G SRG GF+ F +A A+ +N + Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194 Query: 180 NKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 +P+ V A + QA SQ+ P + GP Q Sbjct: 195 TEPITVKFANNPSQKTN--QAILSQLYQSPNRRYPGPLAQ 232
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L ++F FG +T+ KV+RD N +G GFV + D+A+ A+A +N +G++ L Sbjct: 288 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 347 Query: 192 YVALAQRK 215 V+ K Sbjct: 348 QVSFKTNK 355 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 E+L+ LF G I SCK++RD G S G GFV + DA +A+ +N + K + V Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 198 ALAQ 209 + A+ Sbjct: 113 SYAR 116 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 T+ ++L +LF+++G I + +++ D G SRG GF+ F +A A+ +N + Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGA 194 Query: 180 NKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 +P+ V A + QA SQ+ P + GP Q Sbjct: 195 TEPITVKFANNPSQKTN--QAILSQLYQSPNRRYPGPLAQ 232
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 48.1 bits (113), Expect = 1e-05 Identities = 26/77 (33%), Positives = 41/77 (53%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V D ++ELFAEFGT+ V D +G S G+ V F+ DA +A+ + N + Sbjct: 112 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 171 Query: 183 KPLYVALAQRKEDRKAR 233 +P+ + L + D + R Sbjct: 172 RPMNIQLVTSQIDTQRR 188
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 48.1 bits (113), Expect = 1e-05 Identities = 26/77 (33%), Positives = 41/77 (53%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V D ++ELFAEFGT+ V D +G S G+ V F+ DA +A+ + N + Sbjct: 113 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 172 Query: 183 KPLYVALAQRKEDRKAR 233 +P+ + L + D + R Sbjct: 173 RPMNIQLVTSQIDAQRR 189
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/70 (30%), Positives = 43/70 (61%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V +KL+E+F+ G + ++ D +G SRG G V F+ +A +A++ N +++ + Sbjct: 210 DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFD 269 Query: 183 KPLYVALAQR 212 +P++V + +R Sbjct: 270 RPMHVKMDER 279 Score = 38.5 bits (88), Expect = 0.008 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%) Frame = +3 Query: 21 EKLRELFAE-FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 + L++L E G +T +++ D+ G SRG V FK + +A +N + +PL V Sbjct: 83 QSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142 Query: 198 ALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGV 317 E + +Q + + M GP M +PP + Sbjct: 143 KEDPDGEHARRAMQKVMATTGGMGMGPG-GPGMINIPPSI 181 Score = 31.2 bits (69), Expect = 1.3 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVAL 203 L++ F E G + + + NG S+G G V F+S + A RA MN + + + V + Sbjct: 667 LKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 724
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 47.8 bits (112), Expect = 1e-05 Identities = 24/70 (34%), Positives = 40/70 (57%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 ++ L+ +FA+FG + + R +G RG GFV FK++ +A +AL MN K + + + V Sbjct: 126 EDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAV 185 Query: 198 ALAQRKEDRK 227 A K+ K Sbjct: 186 DWAVAKDKYK 195 Score = 40.0 bits (92), Expect = 0.003 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDSNG-ASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 E+L ELF++ G + C V+ + A RG G+V F ++D RAL E+ G K + V Sbjct: 17 EQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITT-FEGCK-INV 74 Query: 198 ALAQRKEDRKAR 233 +A++K K + Sbjct: 75 TVAKKKLRNKTK 86
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VDD L+ELF+E G + KV+ D +G SRG GFV + S + + A+ +N + + Sbjct: 219 VDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRS 278 Query: 189 LYVALAQRKEDRK 227 + V+ A+ + R+ Sbjct: 279 IRVSAAEERPRRQ 291 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 +VD L LF G + +V+ D +G SRG GFV + ++ A + N + + Sbjct: 98 SVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGR 157 Query: 186 PLYV 197 + V Sbjct: 158 AIRV 161
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L +LF FG + + KV+RD N +G GFV + D+A+ A+A +N +G++ L Sbjct: 309 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 368 Query: 192 YVALAQRK 215 V+ K Sbjct: 369 QVSFKTNK 376 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 E+ R LF G I SCK++RD G S G GFV + DA +A+ +N + K + V Sbjct: 60 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 119 Query: 198 ALAQ 209 + A+ Sbjct: 120 SYAR 123 Score = 43.1 bits (100), Expect = 3e-04 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 T+ ++L +LF+++G I + +++ D G SRG GF+ F +A A+ +N + Sbjct: 142 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 201 Query: 180 NKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGP 290 +P+ V A + + QA SQ+ P + GP Sbjct: 202 TEPITVKFANNPSQKSS--QALLSQLYQSPNRRYPGP 236
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 47.4 bits (111), Expect = 2e-05 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 +DD +L +LF+E G + S +V+ D G SRG GFV S + S A+A ++ + + + Sbjct: 241 IDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRT 300 Query: 189 LYVALAQRKEDRKAR 233 + V +A EDR R Sbjct: 301 IRVNVA---EDRSRR 312 Score = 42.4 bits (98), Expect = 6e-04 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVM--RDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 VD E L LF + G + +V+ RD++ SRG GFV +V++A +A+ N V + Sbjct: 147 VDSEGLARLFEQAGVVEIAEVIYNRDTD-QSRGFGFVTMSTVEEAEKAVEMYNRYDVNGR 205 Query: 186 PLYVALAQRKEDRKARLQAQFSQ 254 L V A R+ +R R F Q Sbjct: 206 LLTVNKAARRGERPERPPRTFEQ 228
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L +LF FG + + KV+RD N +G GFV + D+A+ A+A +N +G++ L Sbjct: 302 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 361 Query: 192 YVALAQRK 215 V+ K Sbjct: 362 QVSFKTNK 369 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 E+ R LF G I SCK++RD G S G GFV + DA +A+ +N + K + V Sbjct: 53 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 198 ALAQ 209 + A+ Sbjct: 113 SYAR 116 Score = 43.1 bits (100), Expect = 3e-04 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 T+ ++L +LF+++G I + +++ D G SRG GF+ F +A A+ +N + Sbjct: 135 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 194 Query: 180 NKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGP 290 +P+ V A + + QA SQ+ P + GP Sbjct: 195 TEPITVKFANNPSQKSS--QALLSQLYQSPNRRYPGP 229
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L +LF FG + + KV+RD N +G GFV + D+A+ A+A +N +G++ L Sbjct: 314 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 373 Query: 192 YVALAQRK 215 V+ K Sbjct: 374 QVSFKTNK 381 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 E+ R LF G I SCK++RD G S G GFV + DA +A+ +N + K + V Sbjct: 65 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 124 Query: 198 ALAQ 209 + A+ Sbjct: 125 SYAR 128 Score = 43.1 bits (100), Expect = 3e-04 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMV--G 179 T+ ++L +LF+++G I + +++ D G SRG GF+ F +A A+ +N + Sbjct: 147 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 206 Query: 180 NKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGP 290 +P+ V A + + QA SQ+ P + GP Sbjct: 207 TEPITVKFANNPSQKSS--QALLSQLYQSPNRRYPGP 241
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 47.4 bits (111), Expect = 2e-05 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 ++D+++L + FG + S +++RDS+G SRG GF +S + + N K + P Sbjct: 151 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 210
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 47.0 bits (110), Expect = 2e-05 Identities = 21/70 (30%), Positives = 43/70 (61%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V +KL+E+F+ G + ++ D +G SRG G V F+ +A +A++ N +++ + Sbjct: 211 DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 270 Query: 183 KPLYVALAQR 212 +P++V + +R Sbjct: 271 RPMHVKMDER 280 Score = 38.9 bits (89), Expect = 0.006 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%) Frame = +3 Query: 21 EKLRELFAE-FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 + L++L E G +T +++ D+ G SRG V FK + +A +N + +PL V Sbjct: 84 QSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 143 Query: 198 ALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGV 317 E + +Q + + M GP M +PP + Sbjct: 144 KEDPDGEHARRAMQKVMATTGGMGMGPG-GPGMITIPPSI 182 Score = 31.2 bits (69), Expect = 1.3 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVAL 203 L++ F E G + + + NG S+G G V F+S + A RA MN + + + V + Sbjct: 668 LKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 725
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 47.0 bits (110), Expect = 2e-05 Identities = 21/70 (30%), Positives = 43/70 (61%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V +KL+E+F+ G + ++ D +G SRG G V F+ +A +A++ N +++ + Sbjct: 171 DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 230 Query: 183 KPLYVALAQR 212 +P++V + +R Sbjct: 231 RPMHVKMDER 240 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 21 EKLRELFAE-FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 + L++L E G +T +++ D+ G SRG V FK + +A +N + +PL V Sbjct: 83 QSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142 Score = 31.2 bits (69), Expect = 1.3 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVAL 203 L++ F E G + + + NG S+G G V F+S + A RA MN + + + V + Sbjct: 628 LKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 685
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 47.0 bits (110), Expect = 2e-05 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VDD L+ELF+E G + KV+ D +G SRG GFV + S + + A+ +N + + Sbjct: 218 VDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRS 277 Query: 189 LYVALAQRKEDRK 227 + V+ A+ + R+ Sbjct: 278 IRVSAAEERPRRQ 290 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 +VD L LF G + +V+ D G SRG GFV + ++ A + N + + Sbjct: 97 SVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGR 156 Query: 186 PLYV 197 + V Sbjct: 157 AIRV 160
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 47.0 bits (110), Expect = 2e-05 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +E+ R+LFA FGT+T C + +G R GF+ FKS ++A AL + + + V Sbjct: 15 EERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFHRSFIDTTRITV 74 Query: 198 ALAQRKED-RKARLQAQFSQMRPVP 269 + D K R ++ +Q P Sbjct: 75 EFCKSFGDPSKPRAWSKHAQKSSQP 99
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 47.0 bits (110), Expect = 2e-05 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNN--KMVG-NKP 188 ++++ E+F +FG + +MRD SRG GFV + S + A A+ +N M G N+P Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283 Query: 189 LYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPP 311 L V A+ K + + +M P P+ GPR Q P Sbjct: 284 LIVRFAEPKRPK----PGESREMAP-PVGLGSGPRFQASGP 319
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L ++F FG +T+ KV+RD N +G GFV + ++A+ A+A +N +G+K L Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 315 Query: 192 YVALAQRKEDR 224 V+ K + Sbjct: 316 QVSFKTNKSHK 326
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 47.0 bits (110), Expect = 2e-05 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++R FA +G++ K++ D G S+G GFV+F + D + + N Sbjct: 48 DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVESQIN--FHG 105 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQML--PPGVPVGQQMFYGQPPA 356 K L + A RK++ L A Q RP+ P+ Q + P Y QPP Sbjct: 106 KKLKLGPAIRKQN----LCAYHVQPRPLVFNHPPPPQFQNVWTNPNTET-----YMQPPT 156 Query: 357 FINP 368 +NP Sbjct: 157 TMNP 160
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 46.6 bits (109), Expect = 3e-05 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Frame = +3 Query: 12 VDDEKLRELFAE-FGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 V++ + LFA + + S K+M D SRG GFV F +D ALAEM ++ G++ Sbjct: 197 VNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDR 256 Query: 186 PLYVALAQRKEDRKARLQAQFSQMRPVPMA 275 P+ V LA K KA + FS + VP++ Sbjct: 257 PIRVGLATPKS--KAHV---FSPVNVVPVS 281 Score = 35.4 bits (80), Expect = 0.069 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 21/134 (15%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 V +E+L+ LF FG I K+ +G GFV F + A A+ ++ +GN + Sbjct: 314 VSEEELKYLFQNFGEIVYVKIP-----PGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRI 368 Query: 192 YVALAQRKEDRKA---RLQAQFSQMRPVPM-----AQTVGPRMQMLP------------- 308 ++ + + A Q+Q SQ +P A ++ P+ Q P Sbjct: 369 RLSWGRNQNPIAAPALNYQSQVSQ-TTIPATSLFPAMSLPPQAQFSPYPAVAPSPLALQT 427 Query: 309 PGVPVGQQMFYGQP 350 G P+G ++ G P Sbjct: 428 RGAPIGMEISIGSP 441
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG 179 DE LR F ++GT+T C VMRD N SRG GFV + +V++ A+ +K+ G Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 80
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG 179 DE LR F ++GT+T C VMRD N SRG GFV + +V++ A+ +K+ G Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 80
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 46.6 bits (109), Expect = 3e-05 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VD+ +L +LF+E G + +V+ D G SRG GFV VD+ + A++ ++ + + + Sbjct: 255 VDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRA 314 Query: 189 LYVALAQRKEDRK 227 + V +A+ + R+ Sbjct: 315 IRVNVAEERPPRR 327 Score = 36.6 bits (83), Expect = 0.031 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V+ + L LF + GT+ +V+ + SRG GFV SVD+A A+ + N + + Sbjct: 161 VNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRL 220 Query: 189 LYVALAQRKEDRKAR 233 L V A + R R Sbjct: 221 LTVNKAAPRGSRPER 235
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 46.6 bits (109), Expect = 3e-05 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 +DD +L ++F+E G + S +V+ D +G SRG GFV S + S A+A ++ + + + Sbjct: 202 IDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRT 261 Query: 189 LYVALAQRKEDR 224 + V A+ + R Sbjct: 262 IRVNAAEERPRR 273 Score = 33.9 bits (76), Expect = 0.20 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 +D E L +LF + G + +V+ + SRG GFV +V++A +A+ + + + Sbjct: 108 IDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRL 167 Query: 189 LYVALAQRKEDRKARLQAQF 248 L V A + R R F Sbjct: 168 LTVNKAAPRGSRPERAPRTF 187
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 46.6 bits (109), Expect = 3e-05 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMN--NKMVG-NKP 188 + +R +F+ FG I C+++R +G SRG FV F + A A+ M+ M G + P Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSP 180 Query: 189 LYVALAQRKEDRKARLQAQ--FSQMRPVPMAQTVG 287 + V A ++D++ + AQ QM+ + A G Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWG 215 Score = 30.4 bits (67), Expect = 2.2 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 11/84 (13%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSN---GASRGSGFVAF---KSVDDASRALAEMNNK 170 T ++ LRELF ++G + ++RD + S+G FV F K+ +A AL M Sbjct: 26 TWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 85 Query: 171 MVGNKPLYVALAQRK-----EDRK 227 + P+ + A + EDRK Sbjct: 86 PGMHHPIQMKPADSEKNNAVEDRK 109
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG 179 DE LR F ++GT+T C VMRD N SRG GFV + +V++ A+ +K+ G Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 80
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 46.6 bits (109), Expect = 3e-05 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 DD LR+ FA FG + KV+ D G SRG GFV F A+ A++EM+ K + + + Sbjct: 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 Query: 192 YV 197 V Sbjct: 107 RV 108
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 46.6 bits (109), Expect = 3e-05 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++R FA +G++ K++ D G S+G GFV+F + D + + N Sbjct: 48 DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQIN--FHG 105 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQML--PPGVPVGQQMFYGQPPA 356 K L + A RK++ L Q RP+ P+ Q + P Y QPP Sbjct: 106 KKLKLGPAIRKQN----LCTYHVQPRPLIFNPPPPPQFQSVWSSPNAET-----YMQPPT 156 Query: 357 FINP 368 +NP Sbjct: 157 MMNP 160
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG 179 DE LR F ++GT+T C VMRD N SRG GFV + +V++ A+ +K+ G Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDG 80
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 46.6 bits (109), Expect = 3e-05 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +DE L+ F++FG + K++ D +G SRG GFV FK A+ EMN K + + + Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVI 77 Query: 192 YVALAQRK 215 V AQ + Sbjct: 78 TVNEAQSR 85
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 46.2 bits (108), Expect = 4e-05 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSC-KVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMV 176 D VD++ L + F+ FG I K+MRD +G S+G F+ F S + + AL MN + + Sbjct: 108 DPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL 167 Query: 177 GNKPLYVALAQRKEDRKAR 233 N+ + V+ A +++ + R Sbjct: 168 CNRAITVSYAFKRDSKGER 186 Score = 35.0 bits (79), Expect = 0.090 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGAS-RGSGFVAFKSVDDASRALAEMNNKMVG 179 D+ V + L EL + G + S + +D A+ +G GFV F +DA A+ +N + Sbjct: 21 DEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLY 80 Query: 180 NKPLYVALAQRKE 218 KP+ V A E Sbjct: 81 GKPIKVNKASAHE 93
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 46.2 bits (108), Expect = 4e-05 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 33/154 (21%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNN----- 167 D D+E LRE F +FG + S K++ D + G RG FV F D +A+ + + Sbjct: 132 DNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYV 191 Query: 168 -----KMVGN-------------KPLYVALAQRKEDRKARLQAQFSQMR------PVPMA 275 K + N + +L Q+++ + Q M+ PVP Sbjct: 192 HVDVKKSIYNLDKKEKQQPGGLANAIKPSLNQQQQQQGGGQQPPNGNMQAPSFRPPVPPQ 251 Query: 276 QTVGPRMQMLPP---GVPVGQQMFYGQPPAFINP 368 Q +GP Q PP P ++G PP + P Sbjct: 252 QAMGPYQQQPPPAPMSAPPPNFNYWGPPPPAMPP 285
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 46.2 bits (108), Expect = 4e-05 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMN--NKMVG-NKP 188 + +R +F+ FG I C+++R +G SRG FV F + A A+ M+ M G + P Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180 Query: 189 LYVALAQRKEDRKARLQAQ--FSQMRPVPMAQTVG 287 + V A ++D++ + AQ QM+ + A G Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWG 215 Score = 30.8 bits (68), Expect = 1.7 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 11/84 (13%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSN---GASRGSGFVAF---KSVDDASRALAEMNNK 170 T ++ LRELF ++G + V+RD + S+G FV F K+ +A AL M Sbjct: 26 TWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 85 Query: 171 MVGNKPLYVALAQRK-----EDRK 227 + P+ + A + EDRK Sbjct: 86 PGMHHPIQMKPADSEKNNAVEDRK 109
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFK---SVDDASRALAEMNNKM 173 DT +D LRE F ++GT+T K+M+D + G SRG GF++F+ SVD+ + ++ K+ Sbjct: 169 DTTEDN-LREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKV 227 Query: 174 VGNKPLYVALAQRKEDRKARL 236 + K A+ + ++D+ ++ Sbjct: 228 IDPKR---AIPRDEQDKTGKI 245 Score = 36.2 bits (82), Expect = 0.040 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V ++ E F+++GTI ++M D + G SRG GFV + S D R NK + K Sbjct: 254 VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV---CQNKFIDFKD 310 Query: 189 LYVALAQRKEDR 224 + + +R E R Sbjct: 311 RKIEI-KRAEPR 321
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 46.2 bits (108), Expect = 4e-05 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +DE L + F++FG IT K++ D G SRG GFV FK A+ MN + + + + Sbjct: 18 NDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNI 77 Query: 192 YVALAQRK 215 V AQ + Sbjct: 78 TVNEAQSR 85
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 46.2 bits (108), Expect = 4e-05 Identities = 18/60 (30%), Positives = 34/60 (56%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 ++D+++L + FG + S +++RD++GASRG GF +S + + N K + P Sbjct: 147 SMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPP 206
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 45.8 bits (107), Expect = 5e-05 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 +++++LR + E G I +VM D +G SR GFV K+V+DA+ + ++N+ +G + Sbjct: 95 LNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRK 154 Query: 189 LYVALAQRKEDRK--ARLQAQFSQMRPVPMAQTVG 287 + V + ++ + A QA+ SQ P +G Sbjct: 155 IKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIG 189 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 TV +E L++ F+E G + KV R S G GFV+F S ++ A+ +NN ++ + Sbjct: 194 TVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQ 253 Query: 186 PLYV 197 + V Sbjct: 254 KIRV 257
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 45.8 bits (107), Expect = 5e-05 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 D +L LF G I +C++MRD G S G FV F + D+ RA+ +N V NK L Sbjct: 123 DRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLK 182 Query: 195 VALAQ 209 V+ A+ Sbjct: 183 VSYAR 187
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 45.8 bits (107), Expect = 5e-05 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L ++F FG +T+ KV+RD N +G GFV + ++++ A+A +N +G+K L Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKIL 315 Query: 192 YVALAQRKEDR 224 V+ K + Sbjct: 316 QVSFKTNKSHK 326
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 45.8 bits (107), Expect = 5e-05 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + ++ LR +F FG I S ++M DS G S+G GF+ F + A +AL ++N + +P Sbjct: 261 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320 Query: 189 LYVALAQRKED 221 + V + D Sbjct: 321 MKVGHVTERTD 331
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 45.8 bits (107), Expect = 5e-05 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + ++ LR +F FG I S ++M DS G S+G GF+ F + A +AL ++N + +P Sbjct: 261 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 320 Query: 189 LYVALAQRKED 221 + V + D Sbjct: 321 MKVGHVTERTD 331
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 45.8 bits (107), Expect = 5e-05 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L +F+ FG I SC+V+RD G S F+ F+ +D +A +M+N ++ ++ ++ Sbjct: 253 DEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIH 312 Query: 195 VALAQ 209 V +Q Sbjct: 313 VDFSQ 317
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 45.8 bits (107), Expect = 5e-05 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L +F+ FG I SC+V+RD G S F+ F+ +D +A +M+N ++ ++ ++ Sbjct: 253 DEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIH 312 Query: 195 VALAQ 209 V +Q Sbjct: 313 VDFSQ 317
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 D +L LF G I +C++MRD G S G FV F S D+ RA+ +N V NK L Sbjct: 140 DRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK 199 Query: 195 VALAQ 209 V+ A+ Sbjct: 200 VSYAR 204
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D+ LRE F ++GT+T C VMRD SRG GFV + V++ A+ +K+ G Sbjct: 48 DDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDG 102
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 45.4 bits (106), Expect = 7e-05 Identities = 21/67 (31%), Positives = 40/67 (59%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V +KL+E+F+ GT+ + D +G SRG G V F+ +A +A++ N + + + Sbjct: 232 DFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFD 291 Query: 183 KPLYVAL 203 +P++V + Sbjct: 292 RPMHVKM 298 Score = 42.7 bits (99), Expect = 4e-04 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Frame = +3 Query: 21 EKLRELFAE-FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 + +++L E G +T ++ +D+ G SRG G V FK + +AL MN + +PL + Sbjct: 105 QAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 164 Query: 198 ALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGV 317 E+ + LQ + + A VG + LPP + Sbjct: 165 KEDPDGENARRALQRTGTSFQG-SHASDVGSGLVNLPPSI 203 Score = 36.6 bits (83), Expect = 0.031 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVA 200 +KL+E F++ G + ++ + NG S+G G V F+S + A +A MN + + + V Sbjct: 528 QKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRIMNGIKISGREIDVR 586 Query: 201 L 203 L Sbjct: 587 L 587
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + E ++ FA FG I+ +V++D + G S+G GFV+F + DA A+ M + +G + Sbjct: 108 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 167 Query: 189 LYVALAQRK 215 + A RK Sbjct: 168 IRTNWATRK 176
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D+ LRE F ++GT+T C VMRD SRG GFV + V++ A+ +K+ G Sbjct: 48 DDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDG 102
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D+ LRE F ++GT+T C VMRD SRG GFV + V++ A+ +K+ G Sbjct: 48 DDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDG 102
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 45.4 bits (106), Expect = 7e-05 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG 179 DE LR F ++GT+T C VMRD N SRG GFV + +V+ A+ +K+ G Sbjct: 26 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDG 80
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VD +L +LF+E G + S +V+ D G SRG GFV S + + A+A ++ + + + Sbjct: 160 VDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRA 219 Query: 189 LYVALAQRKEDR 224 + V +A+ + R Sbjct: 220 VRVNVAEERPRR 231 Score = 33.9 bits (76), Expect = 0.20 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VD EKL +F G + +V+ + SRG GFV +V++A +A+ +N + + Sbjct: 66 VDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQ 125 Query: 189 LYV 197 L V Sbjct: 126 LTV 128
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 45.4 bits (106), Expect = 7e-05 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + E ++ FA FG I+ +V++D + G S+G GFV+F + DA A+ M + +G + Sbjct: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184 Query: 189 LYVALAQRK 215 + A RK Sbjct: 185 IRTNWATRK 193 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 16/88 (18%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSG----------------FVAFKSVDDAS 143 V + + +LF++ G SCK++ + + R + FV F DA+ Sbjct: 20 VTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAA 79 Query: 144 RALAEMNNKMVGNKPLYVALAQRKEDRK 227 ALA MN + + K + V A +K Sbjct: 80 AALAAMNGRKILGKEVKVNWATTPSSQK 107
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 45.4 bits (106), Expect = 7e-05 Identities = 21/67 (31%), Positives = 40/67 (59%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V +KL+E+F+ GT+ + D +G SRG G V F+ +A +A++ N + + + Sbjct: 241 DFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFD 300 Query: 183 KPLYVAL 203 +P++V + Sbjct: 301 RPMHVKM 307 Score = 41.6 bits (96), Expect = 0.001 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Frame = +3 Query: 21 EKLRELFAE-FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 + +++L E G +T ++ +D+ G SRG G V FK + +AL MN + +PL + Sbjct: 114 QAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 173 Query: 198 ALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGV 317 E+ + LQ P +G + LPP + Sbjct: 174 KEDPDGENARRALQRTGGSF-PGGHVPDMGSGLMNLPPSI 212 Score = 35.0 bits (79), Expect = 0.090 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVA 200 +KL+E F++ G + ++ + NG S+G G V F S + A +A MN + + + V Sbjct: 537 QKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRIMNGIKISGREIDVR 595 Query: 201 L 203 L Sbjct: 596 L 596
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 45.4 bits (106), Expect = 7e-05 Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNN 167 +++++LR+LF + G + + RD G +G FV F+S DDA+RA+AE+N+ Sbjct: 187 MNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + ++ LR +F FG I + +M+DS+ G S+G GF+ F + A RAL ++N + +P Sbjct: 274 ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 333 Query: 189 LYVALAQRKED 221 + V + D Sbjct: 334 MRVGHVTERLD 344
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 45.1 bits (105), Expect = 9e-05 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 D +L F++FG + K++ D G SRG GFV FK A+ EMN K + + + Sbjct: 19 DAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTIT 78 Query: 195 VALAQRK 215 V AQ + Sbjct: 79 VNEAQSR 85
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 45.1 bits (105), Expect = 9e-05 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L + F ++G I+ V++D SRG GFV F++VDDA A+ MN K V + + Sbjct: 17 NEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQI 76 Query: 192 YVALAQRKEDRK 227 V A + + Sbjct: 77 RVDQAGKSSGER 88
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + E ++ FA FG I+ +V++D + G S+G GFV+F + DA A+ +M + +G + Sbjct: 117 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176 Query: 189 LYVALAQRK 215 + A RK Sbjct: 177 IRTNWATRK 185 Score = 32.3 bits (72), Expect = 0.58 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 V + + +LF++ G +CK++ D+ G + FV F A+ ALA MN + + K + Sbjct: 18 VTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEV 76 Query: 192 YVALAQRKEDRK 227 V A +K Sbjct: 77 KVNWATTPSSQK 88
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 45.1 bits (105), Expect = 9e-05 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 + E ++ FA FG I+ +V++D + G S+G GFV+F + DA A+ +M + +G + Sbjct: 117 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176 Query: 189 LYVALAQRK 215 + A RK Sbjct: 177 IRTNWATRK 185 Score = 32.3 bits (72), Expect = 0.58 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 V + + +LF++ G +CK++ D+ G + FV F A+ ALA MN + + K + Sbjct: 18 VTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEV 76 Query: 192 YVALAQRKEDRK 227 V A +K Sbjct: 77 KVNWATTPSSQK 88
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 44.7 bits (104), Expect = 1e-04 Identities = 17/60 (28%), Positives = 33/60 (55%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 ++D+++L + FG + S +++RD++G SRG GF +S + + N K + P Sbjct: 145 SMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPP 204
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D TV + LR F FG IT + R S G + GF+ F+++D + RA M+ K++ Sbjct: 382 DITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMSHRAKLAMSGKIIIR 441 Query: 183 KPLYV 197 P+ + Sbjct: 442 NPIKI 446
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +3 Query: 75 MRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALAQRKEDRK 227 +R RG GFV+F + +D SRA+ EMN K VG+ L V A +ED++ Sbjct: 250 LRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQ 300
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 44.3 bits (103), Expect = 1e-04 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++R FA +G++ K++ D G S+G GFV+F + D + + N Sbjct: 48 DVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVESQIN--FHG 105 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQML--PPGVPVGQQMFYGQPPA 356 K L + A RK++ L A Q RP+ P+ Q + P Y PP Sbjct: 106 KKLKLGPAIRKQN----LCAYHVQPRPLVFNHPPPPQFQNVWSNPNTET-----YMHPPT 156 Query: 357 FINP 368 +NP Sbjct: 157 TMNP 160
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 44.3 bits (103), Expect = 1e-04 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 + L +F+ FG I SC+V++D G S F+ F DDA RA +M N +V ++ ++V Sbjct: 276 DDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKMQNVLVDDRRIWV 335 Query: 198 ALAQ 209 +Q Sbjct: 336 DFSQ 339
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 44.3 bits (103), Expect = 1e-04 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VD + L LF+E G + KV+ D +G SRG GFV + S ++ + A+ ++ + + Sbjct: 199 VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRA 258 Query: 189 LYVALAQRKEDRK 227 + V+ A+ + R+ Sbjct: 259 IRVSPAEARPPRR 271 Score = 34.7 bits (78), Expect = 0.12 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + D L ELF G + +V+ D G SRG GFV S ++ A + N + + Sbjct: 97 SADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGR 156 Query: 186 PLYVALAQRKEDRK 227 L V E R+ Sbjct: 157 ALRVNSGPPPEKRE 170
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 44.3 bits (103), Expect = 1e-04 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VD + L LF+E G + KV+ D +G SRG GFV + S ++ + A+ ++ + + Sbjct: 205 VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRA 264 Query: 189 LYVALAQRKEDRK 227 + V+ A+ + R+ Sbjct: 265 IRVSPAEARPPRR 277 Score = 34.7 bits (78), Expect = 0.12 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 + D L ELF G + +V+ D G SRG GFV S ++ A + N + + Sbjct: 97 SADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGR 156 Query: 186 PLYVALAQRKEDRK 227 L V E R+ Sbjct: 157 ALRVNSGPPPEKRE 170
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 44.3 bits (103), Expect = 1e-04 Identities = 25/77 (32%), Positives = 40/77 (51%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D V D ++ELFAEFGT+ V D +G S G+ V F+ DA +A+ + + Sbjct: 83 DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 142 Query: 183 KPLYVALAQRKEDRKAR 233 +P+ + L + D + R Sbjct: 143 RPMDIQLVASQIDPQRR 159
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 43.9 bits (102), Expect = 2e-04 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 2/124 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++R FA +G++ K++ D G S+G GFV+F + D + + N Sbjct: 48 DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVESQIN--FHG 105 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQML--PPGVPVGQQMFYGQPPA 356 K L + A RK++ L A Q RP+ P+ Q + P Y QP Sbjct: 106 KKLKLGPAIRKQN----LCAYHVQPRPLVFNHPPPPQFQNVWTNPNTET-----YMQPTT 156 Query: 357 FINP 368 +NP Sbjct: 157 TMNP 160
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 ++ L +LF FG + S K+++D + +G GFV+ + D+A+ A+ +N +GN+ L Sbjct: 450 EEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVL 509 Query: 192 YVALAQRK 215 V+ K Sbjct: 510 QVSFKTNK 517 Score = 36.6 bits (83), Expect = 0.031 Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSNG--ASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 T+ ++L +FA FG I + ++++++ ++G GF+ F ++A+RA+ +N + Sbjct: 294 TMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSS 353 Query: 183 --KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRM 296 P+ V + +Q Q + + +G M Sbjct: 354 CTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAM 393
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 ++ L +LF FG + S K+++D + +G GFV+ + D+A+ A+ +N +GN+ L Sbjct: 414 EEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVL 473 Query: 192 YVALAQRK 215 V+ K Sbjct: 474 QVSFKTNK 481 Score = 36.6 bits (83), Expect = 0.031 Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 4/100 (4%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSNG--ASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 T+ ++L +FA FG I + ++++++ ++G GF+ F ++A+RA+ +N + Sbjct: 258 TMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSS 317 Query: 183 --KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRM 296 P+ V + +Q Q + + +G M Sbjct: 318 CTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAM 357
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 43.9 bits (102), Expect = 2e-04 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 D +L LF G I +C++M+D G S G FV F S DA A+ +N V NK L Sbjct: 98 DRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLK 157 Query: 195 VALAQ 209 V+ A+ Sbjct: 158 VSYAR 162
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 ++E L + FA FG + KV+ D G SRG GFV F S A+ MN K + + + Sbjct: 20 NNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNI 79 Query: 192 YVALAQRK 215 V AQ + Sbjct: 80 TVNQAQSR 87
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/71 (32%), Positives = 43/71 (60%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 DT + + L +F+ +GT+ S K++ D G S+G GFV F++ +A R A+ ++ ++ Sbjct: 43 DTTEAD-LTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQRLQADGECVVLRDR 101 Query: 186 PLYVALAQRKE 218 L +A A +K+ Sbjct: 102 KLNIAPAIKKQ 112
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 43.1 bits (100), Expect = 3e-04 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L++ F+ F +T +VM + G SRG GFV F S D A+ A++ MN + + + Sbjct: 43 DEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNI 102 Query: 192 YVALAQ 209 V +A+ Sbjct: 103 SVNVAK 108
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 43.1 bits (100), Expect = 3e-04 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = +3 Query: 9 TVDDEKLRELF-AEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 T + L LF F ++ + +VM D G+SR GFV F D+ RAL EM+ K Sbjct: 202 TATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQG 261 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMR 260 + L VA A + + +LQ Q Q + Sbjct: 262 RALRVAYATPRNNMMLQLQEQQQQQQ 287
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 42.7 bits (99), Expect = 4e-04 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +E L FA +G I KV+ D G SRG GFV F S + A+ MN K + + + Sbjct: 21 NESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNIT 80 Query: 195 VALAQRK 215 V AQ + Sbjct: 81 VNQAQSR 87
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 42.7 bits (99), Expect = 4e-04 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L +F+ FGTI SC+V+RD G S F+ F++ D +A +M ++ + ++ Sbjct: 261 DEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIH 320 Query: 195 VALAQ 209 V +Q Sbjct: 321 VDFSQ 325
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 42.7 bits (99), Expect = 4e-04 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALA 155 +E LR + ++GT+T C VMRD ++ SRG GFV F +++ A+A Sbjct: 22 EESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68 Score = 33.9 bits (76), Expect = 0.20 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 + ++ LRE F E+G I S +++ D +G RG FV F D + + + + + G+ Sbjct: 109 EDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGH 168
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 42.7 bits (99), Expect = 4e-04 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 D +L LF G I +C++M+D G S G FV F S DA A+ +N V NK L Sbjct: 115 DRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLK 174 Query: 195 VALAQ 209 V+ A+ Sbjct: 175 VSYAR 179
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D+ LRE F ++G +T C VMRD SRG GFV + V++ +++ +K+ G Sbjct: 40 DDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDG 94
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 42.7 bits (99), Expect = 4e-04 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L +F+ FG I SC+V+RD +G S F+ F + A +A +M N +V ++ ++ Sbjct: 259 DEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKMQNVLVDDRRIW 318 Query: 195 VALAQ 209 V +Q Sbjct: 319 VDFSQ 323
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 42.7 bits (99), Expect = 4e-04 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D+ LRE F ++G +T C VMRD SRG GFV + V++ +++ +K+ G Sbjct: 40 DDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDG 94
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 42.4 bits (98), Expect = 6e-04 Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 7/131 (5%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 D L+ +F +FG ++ +++ + G S+G GFV + DA RA E++ M+ + + V Sbjct: 166 DPDLKTMFEKFGVVSDVEIIFNERG-SKGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224 Query: 198 ALA-QRKEDRKAR-LQAQFSQMRPVPMAQTVGPRMQM---LPPGVPVGQQMFYGQPPAFI 362 A R +K + QM P+ + + QM L P+ Q G+ A I Sbjct: 225 NCATARVHSKKVKPTGGILDQMNPLMAQSALAAQAQMNRALLLRSPLVAQSLLGRGAALI 284 Query: 363 --NPQPGFGFQ 389 QP F Q Sbjct: 285 PGMQQPAFQLQ 295
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 42.0 bits (97), Expect = 7e-04 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 17/146 (11%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +++ ++R F ++GT+ K++ D G S+G GFV+F D + + + V Sbjct: 44 DIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVESQIS--VHG 101 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMA-----------------QTVGPRMQMLPP 311 K L + A RK+ Q S M+P P+A +T ++ P Sbjct: 102 KRLKLGPAIRKQ------QNLCSYMQPRPLAFNPPAPQFHSVWTNQNTETYVQPQAVVSP 155 Query: 312 GVPVGQQMFYGQPPAFINPQPGFGFQ 389 Q Y P I Q G+Q Sbjct: 156 LTQYVQTYAYSSPAVLIQQQVPVGYQ 181
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 42.0 bits (97), Expect = 7e-04 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 T ++ R+LF+ +G + + D+ G S+G +V FK+ D+A+ A E++ ++ + Sbjct: 340 TATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQGR 399 Query: 186 PLYVALAQRKEDRK 227 L++ A K+ K Sbjct: 400 LLHILPADAKKSHK 413 Score = 32.3 bits (72), Expect = 0.58 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +3 Query: 33 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNN-KMVGNKPLYVALAQ 209 ELF+ FG + S +V + + ++RG FV F +A A+ ++ ++G + + + Q Sbjct: 770 ELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQ 829 Query: 210 RKEDRKARLQ 239 ED + +++ Sbjct: 830 DPEDVEQQIE 839
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.0 bits (97), Expect = 7e-04 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALA----EMNNKMVGNK 185 E LRE F +FG + C VMRD SRG GFV F + LA E+++K + K Sbjct: 34 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 93 Query: 186 PLYVALAQRK 215 + AQ K Sbjct: 94 VAFPRRAQPK 103
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.0 bits (97), Expect = 7e-04 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALA----EMNNKMVGNK 185 E LRE F +FG + C VMRD SRG GFV F + LA E+++K + K Sbjct: 34 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 93 Query: 186 PLYVALAQRK 215 + AQ K Sbjct: 94 VAFPRRAQPK 103
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.0 bits (97), Expect = 7e-04 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 5/70 (7%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALA----EMNNKMVGNK 185 E LRE F +FG + C VMRD SRG GFV F + LA E+++K + K Sbjct: 34 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 93 Query: 186 PLYVALAQRK 215 + AQ K Sbjct: 94 VAFPRRAQPK 103
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 42.0 bits (97), Expect = 7e-04 Identities = 24/82 (29%), Positives = 41/82 (50%) Frame = +3 Query: 24 KLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVAL 203 ++RELF ++GT+ C ++R+ GFV V D A+ E+N ++V +PL Sbjct: 101 EVRELFQKYGTVVECDIVRNY-------GFVHLDCVGDVQDAIKELNGRVVDGQPL---- 149 Query: 204 AQRKEDRKARLQAQFSQMRPVP 269 ++Q S++RP P Sbjct: 150 ---------KVQVSTSRVRPKP 162 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/71 (22%), Positives = 32/71 (45%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D+ +LR LF ++GT+ C V+++ GFV ++ A+ +N + Sbjct: 15 DEKTQATELRALFEKYGTVVECDVVKN-------YGFVHMETEQQGRDAIQNLNGYTLNE 67 Query: 183 KPLYVALAQRK 215 + V A+ + Sbjct: 68 FAIKVEAAKSR 78
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 42.0 bits (97), Expect = 7e-04 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVAL 203 LR+ FA+ S KV+ D S+G SRG GF+ F S + + AL MN + +PL + + Sbjct: 233 LRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNV 292 Query: 204 AQRK 215 A +K Sbjct: 293 AGQK 296 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 ++ +L E+FAE GT+ + +++ D SRG FV SV++A A+ + VG + Sbjct: 124 SMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGR 183 Query: 186 PLYV 197 + V Sbjct: 184 TVKV 187
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 42.0 bits (97), Expect = 7e-04 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +++++EL FG + + + DS G S+G F + +A+A +N +G+K L V Sbjct: 304 EDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVV 363 Query: 198 ALAQRKEDR-KARLQAQFSQMRPVPMAQTVGPRMQML 305 LA + R L S + + ++Q G ++L Sbjct: 364 QLACANQQRHNTNLPNSASAIAGIDLSQGAGRATEIL 400
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 42.0 bits (97), Expect = 7e-04 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D D+E LRE F +FG I S ++ D + G RG F+ F D + + + + + N Sbjct: 124 DDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHS-IKN 182 Query: 183 KPLYVALAQRKED 221 K L V A K+D Sbjct: 183 KTLDVKKAIAKQD 195
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/66 (28%), Positives = 37/66 (56%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +++ L+ +F + G I+ +++D SRG F+ F++ DA A +MN K + K + Sbjct: 20 NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 Query: 195 VALAQR 212 V A++ Sbjct: 80 VEQAKK 85
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L +F+ FG I SC+V+RD G S F+ F+S D +A +M ++ + ++ Sbjct: 261 DEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIH 320 Query: 195 VALAQ 209 V +Q Sbjct: 321 VDFSQ 325
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 DD L FA++G + K++ D G SRG GFV FK A+ MN + + + + Sbjct: 20 DDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSI 79 Query: 192 YVALAQRK 215 V AQ + Sbjct: 80 TVNEAQSR 87
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +++++EL FG + + + DS G S+G F + +A+A +N +G+K L V Sbjct: 295 EDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVV 354 Query: 198 ALAQRKEDR-KARLQAQFSQMRPVPMAQTVGPRMQML 305 LA + R L S + + ++Q G ++L Sbjct: 355 QLACANQTRHNTHLPNSASAIAGIDLSQGAGRATEIL 391
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L +F+ FG I SC+V+RD G S F+ F + + +A +M N ++ + ++ Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIH 316 Query: 195 VALAQ 209 V +Q Sbjct: 317 VDFSQ 321
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 +E LR + ++G +T C VMRD ++ SRG GFV F S+ + A+A + + G Sbjct: 34 EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 88
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 +E LR + ++G +T C VMRD ++ SRG GFV F S+ + A+A + + G Sbjct: 22 EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG 76
>PRP24_YEAST (P49960) U4/U6 snRNA-associated splicing factor PRP24 (U4/U6 snRNP| protein) Length = 444 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRDSNGASRGS--GFVAFKSVDDASRALAEMNNKMVG 179 + +D+ LRE F FG+I + S + F+ F++ D A RAL +MN ++G Sbjct: 220 ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG 278 Query: 180 NKPLYVALAQRK 215 N+ + V+LA +K Sbjct: 279 NREISVSLADKK 290
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG---NKPLY 194 LRE F+ FG I V+RD + S+G FV F A RA+ EM+ + +G KP+ Sbjct: 41 LRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIK 100 Query: 195 VALAQRKEDRKAR 233 V +AQ + R Sbjct: 101 VFIAQSRSSGSHR 113 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRA-----------LAEM 161 +E LRE F +G I C ++++ G S+G G+V + A++A LAE Sbjct: 133 EEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRALLAEP 192 Query: 162 NNKMVGN 182 NK+ G+ Sbjct: 193 KNKVSGS 199
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG---NKPLY 194 LRE F+ FG I V+RD + S+G FV F A RA+ EM+ + +G KP+ Sbjct: 41 LRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100 Query: 195 VALAQRKEDRKAR 233 V +AQ + R Sbjct: 101 VFIAQSRSSGSHR 113 Score = 34.3 bits (77), Expect = 0.15 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +E LRE F +G I C ++++ G S+G G+V + A++A+ + Sbjct: 133 EEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRA----- 187 Query: 195 VALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLP 308 + + + ++ Q +S MR + PR+ M P Sbjct: 188 ILAEPKNKASESSEQDYYSNMRQEALGHE--PRVNMFP 223
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 V +E L ELF + G +T + +D G + GFV FK + S A+A +N + +P+ Sbjct: 21 VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 80 Query: 192 YV 197 V Sbjct: 81 NV 82
>NELFE_DROVI (Q95ZE9) Negative elongation factor E| Length = 281 Score = 41.2 bits (95), Expect = 0.001 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 V +E L++ F ++GTI + S + GFV+F + A RA+AEM+ K V L Sbjct: 176 VTEEFLKKTFNDYGTIVNV-----SMEIEKSRGFVSFAKPESADRAIAEMHGKSVTGIVL 230 Query: 192 YVALAQRK 215 V LA+R+ Sbjct: 231 QVQLARRQ 238
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 DD L F+++G + K++ D G SRG GFV FK A+ MN + + + + Sbjct: 20 DDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79 Query: 192 YVALAQRK 215 V AQ + Sbjct: 80 TVNEAQSR 87
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D+ L F++FG + K++ D G SRG GFV FK A+ MN + + + + Sbjct: 20 DERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSI 79 Query: 192 YVALAQRK 215 V AQ + Sbjct: 80 TVNEAQSR 87
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L+ +F+ FG I SC+V+RD G S F+ F++ D +A +M ++ + ++ Sbjct: 261 DEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIH 320 Query: 195 VALAQ 209 V +Q Sbjct: 321 VDFSQ 325
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +3 Query: 57 ITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALAQRKED 221 IT K++RD NG SR GF+ +++ +DA A+ N + + V++A+ D Sbjct: 43 ITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFAD 97 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = +3 Query: 33 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALAQ 209 ELF FG + S +V + + ++RG FV F +A A+ +++ + + L + A+ Sbjct: 781 ELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAE 839
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALA----EMNNKMVGNK 185 + LR+ F++FG I C VMRD + SRG GFV F + L E+++K + K Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPK 94 Query: 186 PLYVALAQRK 215 + AQ K Sbjct: 95 VAFPRRAQPK 104
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG---NKPLY 194 LRE F+ FG I V+RD + S+G FV F A RA+ EM+ + +G KP+ Sbjct: 41 LREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIK 100 Query: 195 VALAQRKEDRKAR 233 V +AQ + R Sbjct: 101 VFIAQSRSSGSHR 113 Score = 32.7 bits (73), Expect = 0.45 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRAL 152 +E LRE F +G I C V+++ G S+G G+V + A++A+ Sbjct: 133 EEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 ++D++++EL FG + + +++DS G S+G F + ++ +A+A +N +G+K Sbjct: 270 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 329 Query: 189 LYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQMFYGQP 350 L V ++A + A+ + + +P P + + PG+ Q G P Sbjct: 330 LLV--------QRASVGAKNATLVSLPSTINQTP-VTLQVPGLMSSQVQMGGHP 374
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 40.8 bits (94), Expect = 0.002 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 1/114 (0%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 ++D++++EL FG + + +++DS G S+G F + ++ +A+A +N +G+K Sbjct: 270 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 329 Query: 189 LYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVPVGQQMFYGQP 350 L V A + A L + S + P+ V PG+ Q G P Sbjct: 330 LLVQRAS-VGAKNATLVSPPSTINQTPVTLQV--------PGLMSSQVQMGGHP 374
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VDD+ L + F E+GTI +V+ D +G S+G G+V F++ + A A+A K + + Sbjct: 274 VDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRM 333 Query: 189 LYVALA 206 + + L+ Sbjct: 334 VNLDLS 339
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VDD L LF+E G + +V+ D +G S+G GFV + S + A+ ++ + + Sbjct: 215 VDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQ 274 Query: 189 LYVALAQRKEDRK 227 + V+ A+ + R+ Sbjct: 275 IRVSEAEARPPRR 287 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VD +L +LF G + +V+ D G SRG GFV SV + A + N + +P Sbjct: 102 VDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRP 161 Query: 189 LYV 197 L V Sbjct: 162 LRV 164
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALA----EMNNKMVGNK 185 + LR+ F++FG I C VMRD + SRG GFV F + L E+++K + K Sbjct: 35 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPK 94 Query: 186 PLYVALAQRK 215 + AQ K Sbjct: 95 VAFPRRAQPK 104
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 40.4 bits (93), Expect = 0.002 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VDD L LF E G + +V+ D +G S+G GFV S + +A+ +N + + Sbjct: 268 VDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQ 327 Query: 189 LYVALAQRKEDR 224 + V+ A+ + R Sbjct: 328 IRVSEAEARPPR 339 Score = 34.7 bits (78), Expect = 0.12 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 VD +L +LF G + +V+ D G SRG GFV + + A + N +P Sbjct: 110 VDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRP 169 Query: 189 LYV 197 L V Sbjct: 170 LRV 172
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 ++ L+ +F +GT+ + + +G RG FV FK++ +A +AL N K + + + V Sbjct: 126 EDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAV 185 Query: 198 ALAQRKEDRK 227 A K+ K Sbjct: 186 DWAVAKDKYK 195 Score = 38.9 bits (89), Expect = 0.006 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDSNG-ASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 ++L ELF++ G + C V+ + A RG G+V F ++D RAL E+ G K + V Sbjct: 17 DQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITT-FEGCK-IDV 74 Query: 198 ALAQRKEDRKAR 233 +A++K K++ Sbjct: 75 TVAKKKLRNKSK 86 Score = 34.7 bits (78), Expect = 0.12 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 20/107 (18%) Frame = +3 Query: 12 VDDEKLRELFAEFGT------ITSCKVMRDSNGA-------SRGSGFVAFKSVDDASRAL 152 VDD++LR+L E I C+VMRD G S G F F+ + A RAL Sbjct: 487 VDDKQLRKLLLEATRGEKGVRIKECRVMRDLKGVHGKMKGQSLGYAFAEFQKHEHALRAL 546 Query: 153 AEMNN--KMVGNKPLYVALAQRKEDRK-----ARLQAQFSQMRPVPM 272 NN ++ G++ + ++ RK R+Q +M P+ Sbjct: 547 RHFNNNPEIFGSQKRPIVEFSLEDRRKLKVKELRIQRSLQKMESKPV 593
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L +F+ FG I SC+V+RD G S F+ F+ A ++M++ ++ ++ ++ Sbjct: 266 DEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRRIH 325 Query: 195 VALAQ 209 V +Q Sbjct: 326 VDFSQ 330
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/60 (33%), Positives = 36/60 (60%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 D LR++F +FG I +++ + G S+G GFV F++ DA RA +++ +V + + V Sbjct: 134 DPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 192
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 40.0 bits (92), Expect = 0.003 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 15/145 (10%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D VD+ ++RE FA++G++ K++ G +G GFV F S D + + + G Sbjct: 55 DMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYF-SEDVDIQTIVDQPISFKGK 113 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQM----LPPGVPVGQQMF---- 338 K L + A KE + + + +Q V P M PPG+ +F Sbjct: 114 K-LKLGPAIMKERSSRSVSSPM-----IGPSQWVNPTPYMYCSCCPPGLAPPSPVFSGGN 167 Query: 339 -------YGQPPAFINPQPGFGFQQ 392 Y PP + PQ + Q Sbjct: 168 QYMQPYSYSSPPGIMVPQVPMNYAQ 192
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L +F ++G I +M+D SRG FV F+S DA A +MN K + K + Sbjct: 20 NEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAI 79 Query: 192 YVALAQRKEDRKAR 233 V A + R Sbjct: 80 KVEQATKPSFESGR 93
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/60 (33%), Positives = 36/60 (60%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 D LR++F +FG I +++ + G S+G GFV F++ DA RA +++ +V + + V Sbjct: 129 DPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/60 (33%), Positives = 36/60 (60%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 D LR++F +FG I +++ + G S+G GFV F++ DA RA +++ +V + + V Sbjct: 130 DPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALA 155 +E LR + ++G +T C VMRD ++ SRG GFV F +++ A++ Sbjct: 22 EESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68 Score = 36.6 bits (83), Expect = 0.031 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +3 Query: 6 DTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 + ++ LRE F E+G I S +++ D +G RG GFV F D + + + + + G+ Sbjct: 109 EDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGH 168
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 ++ ++ EL FG++ C V + G S+G GF + D A+RA +++ K +G + Sbjct: 142 SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 201 Query: 186 PLYV 197 LYV Sbjct: 202 TLYV 205
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 ++DDE L++ F G + +V+ + SRG G+V F++ A +A+ EM K + + Sbjct: 178 SIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGR 237 Query: 186 PLYVALAQRK 215 P+ ++ K Sbjct: 238 PINCDMSTSK 247 Score = 37.7 bits (86), Expect = 0.014 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D + + ELFA+ G + S ++ +G G+V F +++DA +AL + + + N+P+ Sbjct: 279 DRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 39.7 bits (91), Expect = 0.004 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 +D+ ++ F++FGT+T ++ R G S+G FV F+S D A MNN + G + Sbjct: 56 LDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERL 115 Query: 189 L 191 L Sbjct: 116 L 116
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/74 (31%), Positives = 38/74 (51%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +E L+E+F + T KV ++ NG S+G F+ F S +DA AL N + + + + + Sbjct: 498 EETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 554 Query: 198 ALAQRKEDRKARLQ 239 L + AR Q Sbjct: 555 ELQGPRGSPNARSQ 568 Score = 31.6 bits (70), Expect = 0.99 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEM-NNKMVG 179 +DT + E L+E F G++ + V G+S+G GFV F S +DA A M + ++ G Sbjct: 580 EDTTE-ETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 636 Query: 180 NK 185 NK Sbjct: 637 NK 638
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 39.3 bits (90), Expect = 0.005 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG 179 L++ F +FG + C + D N G SRG GF+ FK + L + +++ G Sbjct: 84 LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG 135 Score = 35.8 bits (81), Expect = 0.053 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +EK+RE F EFG I + ++ D RG F+ FK + + L + + + G+K Sbjct: 166 EEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSK-CE 224 Query: 195 VALAQRKE 218 + +AQ KE Sbjct: 225 IKVAQPKE 232
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALA 206 L +LF G + + ++ DS GA G V + +VDDA + +NN G L ++ A Sbjct: 367 LYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIERLNNYNYGGCDLDISYA 426 Query: 207 QR 212 +R Sbjct: 427 KR 428
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/74 (31%), Positives = 38/74 (51%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +E L+E+F + T KV ++ NG S+G F+ F S +DA AL N + + + + + Sbjct: 500 EETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 556 Query: 198 ALAQRKEDRKARLQ 239 L + AR Q Sbjct: 557 ELQGPRGSPNARSQ 570 Score = 31.6 bits (70), Expect = 0.99 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEM-NNKMVG 179 +DT + E L+E F G++ + V G+S+G GFV F S +DA A M + ++ G Sbjct: 582 EDTTE-ETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 638 Query: 180 NK 185 NK Sbjct: 639 NK 640
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/74 (31%), Positives = 38/74 (51%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +E L+E+F + T KV ++ NG S+G F+ F S +DA AL N + + + + + Sbjct: 499 EETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 555 Query: 198 ALAQRKEDRKARLQ 239 L + AR Q Sbjct: 556 ELQGPRGSPNARSQ 569 Score = 31.6 bits (70), Expect = 0.99 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEM-NNKMVG 179 +DT + E L+E F G++ + V G+S+G GFV F S +DA A M + ++ G Sbjct: 581 EDTTE-ETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 637 Query: 180 NK 185 NK Sbjct: 638 NK 639
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 39.3 bits (90), Expect = 0.005 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVG 179 L++ F +FG + C + D N G SRG GF+ FK + L + +++ G Sbjct: 91 LKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDG 142 Score = 35.4 bits (80), Expect = 0.069 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +EK+RE F +FG I + ++ D RG F+ FK D + L + + + G+K Sbjct: 172 EEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSK-CE 230 Query: 195 VALAQRKE 218 + +AQ KE Sbjct: 231 IKVAQPKE 238
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 38.9 bits (89), Expect = 0.006 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 + LRE+F+ +G ++ V+ D G SRG FV F+ +DD+ A+ N + + + Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR 191 Query: 195 V 197 V Sbjct: 192 V 192
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 38.9 bits (89), Expect = 0.006 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D + E LR F+++G + C +M+D + SRG GFV FK + LA + + G Sbjct: 18 DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG 77 Score = 38.1 bits (87), Expect = 0.011 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 + +LRE F +FG +T ++ D+ RG GF+ F+ +A+ + ++G K Sbjct: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185 Query: 195 VALAQRKEDRKARLQAQFSQ--MRPVPMA-------------QTVGPRMQMLPPGVPVGQ 329 R +A Q SQ R P A Q GP+ +P G +G Sbjct: 186 KRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG 245 Query: 330 QMFYGQPPA 356 YG PPA Sbjct: 246 ---YGPPPA 251
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.9 bits (89), Expect = 0.006 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 +++L L + G I ++M D NG +RG FV F + +A A+ ++NN + N Sbjct: 69 EDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRN 123
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 38.9 bits (89), Expect = 0.006 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D + E LR F+++G + C +M+D + SRG GFV FK + LA + + G Sbjct: 18 DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG 77
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 38.9 bits (89), Expect = 0.006 Identities = 19/66 (28%), Positives = 33/66 (50%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 DE ++ +F FG I + RD S+G G++ +++ A AL +MN + + + V Sbjct: 353 DEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412 Query: 198 ALAQRK 215 L K Sbjct: 413 CLGNDK 418
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 38.9 bits (89), Expect = 0.006 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 + LRE+F+ +G ++ V+ D G SRG FV F+ +DD+ A+ N + + + Sbjct: 130 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR 189 Query: 195 V 197 V Sbjct: 190 V 190
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 38.9 bits (89), Expect = 0.006 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D++ L + F+ FG I+ V++D SRG GF+ F + + AS A+ MN + + + + Sbjct: 18 DEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQI 77 Query: 192 YV 197 V Sbjct: 78 RV 79
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 38.9 bits (89), Expect = 0.006 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 16/129 (12%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 + +LRE F +FG +T ++ D+ RG GF+ F+ +A+ + ++G K Sbjct: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185 Query: 195 VALAQRKEDRKARLQAQFSQ--MRPVPMA-------------QTVGPRMQMLPPGVPVGQ 329 R +A Q SQ R VP A Q GP+ +P G +G Sbjct: 186 KRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG 245 Query: 330 QMFYGQPPA 356 YG PPA Sbjct: 246 ---YGPPPA 251 Score = 38.9 bits (89), Expect = 0.006 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 D + E LR F+++G + C +M+D + SRG GFV FK + LA + + G Sbjct: 18 DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG 77
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 38.5 bits (88), Expect = 0.008 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 D++ L + F+ FG I+ V++D SRG GF+ F + + AS A+ MN + + + + Sbjct: 18 DEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQI 77 Query: 192 YV 197 V Sbjct: 78 RV 79
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 38.5 bits (88), Expect = 0.008 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L +F ++G I +M+D SRG FV F+S DA +MN K + K + Sbjct: 20 NEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAI 79 Query: 192 YVALAQRKEDRKAR 233 V A + R Sbjct: 80 KVEQATKPSFESGR 93
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 38.5 bits (88), Expect = 0.008 Identities = 22/83 (26%), Positives = 41/83 (49%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVA 200 E+L ELF+ FGTI +++ N +G +V F+ +A RA+A + + + VA Sbjct: 738 EELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGRDGCLFKGMNISVA 797 Query: 201 LAQRKEDRKARLQAQFSQMRPVP 269 ++ + ++ + R VP Sbjct: 798 ISNPPPRGTSAVKPSVAPKRRVP 820
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +3 Query: 24 KLRELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 + EL FG++ C V + G S+G GF + D A+RA +++ K +G + LYV Sbjct: 147 QFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 205
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +3 Query: 24 KLRELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 + EL FG++ C V + G S+G GF + D A+RA +++ K +G + LYV Sbjct: 147 QFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYV 205
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.7 bits (86), Expect = 0.014 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 L++ F++FG + C + D G SRG GFV FK + + + + +K+ G Sbjct: 113 LKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG 164 Score = 32.3 bits (72), Expect = 0.58 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +EK+RE F FG + S ++ M + RG F+ FK ++ + + E VG Sbjct: 195 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE-EEPVKKIMEKKYHNVGLSKCE 253 Query: 195 VALAQRKEDRKARLQ 239 + +A KE + + Q Sbjct: 254 IKVAMSKEQYQQQQQ 268
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.7 bits (86), Expect = 0.014 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 L++ F++FG + C + D G SRG GFV FK + + + + +K+ G Sbjct: 113 LKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG 164 Score = 32.3 bits (72), Expect = 0.58 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +EK+RE F FG + S ++ M + RG F+ FK ++ + + E VG Sbjct: 195 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE-EEPVKKIMEKKYHNVGLSKCE 253 Query: 195 VALAQRKEDRKARLQ 239 + +A KE + + Q Sbjct: 254 IKVAMSKEQYQQQQQ 268
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 37.7 bits (86), Expect = 0.014 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGA-SRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 + LRE+F+++G I ++ D SRG FV F++VDDA A N + + + Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190 Query: 195 V 197 V Sbjct: 191 V 191
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 37.7 bits (86), Expect = 0.014 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGA-SRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 + LRE+F+++G I ++ D SRG FV F++VDDA A N + + + Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190 Query: 195 V 197 V Sbjct: 191 V 191
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 37.7 bits (86), Expect = 0.014 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGA-SRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 + LRE+F+++G I ++ D SRG FV F++VDDA A N + + + Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190 Query: 195 V 197 V Sbjct: 191 V 191
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 37.7 bits (86), Expect = 0.014 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 +++L L + G I ++M D NG +RG FV F + +A A+ ++NN + N Sbjct: 69 EDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRN 123
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 37.7 bits (86), Expect = 0.014 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAE 158 D+ +RE +++FG IT VMRD + SRG GFV F + A+ + Sbjct: 36 DDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 37.7 bits (86), Expect = 0.014 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNN 167 +++L L + G I ++M D NG +RG FV F + +A A+ ++NN Sbjct: 69 EDELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNN 118
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 37.7 bits (86), Expect = 0.014 Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +3 Query: 24 KLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVA 200 +L LF+++G I S K++ D + G G GF+++ AS + E+N + V L++ Sbjct: 210 ELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKELNGRTVNGSTLFIN 269 Query: 201 LAQRKEDRK 227 +++R+ Sbjct: 270 YHVERKERE 278 Score = 36.2 bits (82), Expect = 0.040 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 21/87 (24%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVM-------------RDSN-------GASRGSGFVAFKSVDD 137 DE L + + FG I S KV+ DS+ G+SRG GFV+F+S D Sbjct: 553 DEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSSRGYGFVSFESPLD 612 Query: 138 ASRALAEMNNKMVG-NKPLYVALAQRK 215 A++A+ + V ++ L V+ AQ++ Sbjct: 613 AAKAILNTDGYQVSKDQVLSVSFAQKR 639
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 37.7 bits (86), Expect = 0.014 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVG 179 L++ F++FG + C + D G SRG GFV FK + + + + +K+ G Sbjct: 111 LKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG 162 Score = 32.3 bits (72), Expect = 0.58 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKV-MRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 +EK+RE F FG + S ++ M + RG F+ FK ++ + + E VG Sbjct: 193 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE-EEPVKKIMEKKYHNVGLSKCE 251 Query: 195 VALAQRKEDRKARLQ 239 + +A KE + + Q Sbjct: 252 IKVAMSKEQYQQQQQ 266
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 37.4 bits (85), Expect = 0.018 Identities = 23/103 (22%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 ++D++++EL FG + + +++D+ G S+G F + + +++A +N +G+K Sbjct: 218 LNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKK 277 Query: 189 LYVAL----AQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQML 305 L V A+ ++ Q+ Q+ + T GP ++L Sbjct: 278 LIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGPPTEVL 320
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 37.4 bits (85), Expect = 0.018 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVAL 203 LR F +G I + RD + S+G GFV F DA AL + K+V + L V L Sbjct: 35 LRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTL 94 Query: 204 AQ 209 A+ Sbjct: 95 AK 96
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 37.4 bits (85), Expect = 0.018 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++ F +G++ K++ + G S+G GFV+F + D + + + Sbjct: 213 DARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIH--FHG 270 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 K L + A RK+ +L A+ Q RP+ + P+ Q Sbjct: 271 KKLKLGPAIRKQ----KLCARHVQPRPLVVNPPPPPQFQ 305 Score = 37.4 bits (85), Expect = 0.018 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++ F +G++ K++ + G S+G GFV+F + D + + + Sbjct: 48 DARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIH--FHG 105 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 K L + A RK+ +L A+ Q RP+ + P+ Q Sbjct: 106 KKLKLGPAIRKQ----KLCARHVQPRPLVVNPPPPPQFQ 140
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 37.4 bits (85), Expect = 0.018 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 +++L L + G I ++M D NG +RG FV F + +A A+ ++NN + N Sbjct: 69 EDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRN 123
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 37.4 bits (85), Expect = 0.018 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++ F +G++ K++ + G S+G GFV+F + D + + + Sbjct: 48 DARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIH--FHG 105 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 K L + A RK+ +L A+ Q RP+ + P+ Q Sbjct: 106 KKLKLGPAIRKQ----KLCARHVQPRPLVVNPPPPPQFQ 140
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 37.4 bits (85), Expect = 0.018 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++ F +G++ K++ + G S+G GFV+F + D + + + Sbjct: 48 DARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIH--FHG 105 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 K L + A RK+ +L A+ Q RP+ + P+ Q Sbjct: 106 KKLKLGPAIRKQ----KLCARHVQPRPLVVNPPPPPQFQ 140
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 37.4 bits (85), Expect = 0.018 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++ F +G++ K++ + G S+G GFV+F + D + + + Sbjct: 378 DARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIH--FHG 435 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 K L + A RK+ +L A+ Q RP+ + P+ Q Sbjct: 436 KKLKLGPAIRKQ----KLCARHVQPRPLVVNPPPPPQFQ 470 Score = 37.4 bits (85), Expect = 0.018 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++ F +G++ K++ + G S+G GFV+F + D + + + Sbjct: 213 DARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIH--FHG 270 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 K L + A RK+ +L A+ Q RP+ + P+ Q Sbjct: 271 KKLKLGPAIRKQ----KLCARHVQPRPLVVNPPPPPQFQ 305 Score = 37.4 bits (85), Expect = 0.018 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 D +D+ ++ F +G++ K++ + G S+G GFV+F + D + + + Sbjct: 48 DARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQIH--FHG 105 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ 299 K L + A RK+ +L A+ Q RP+ + P+ Q Sbjct: 106 KKLKLGPAIRKQ----KLCARHVQPRPLVVNPPPPPQFQ 140
>MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein msa1| Length = 533 Score = 37.4 bits (85), Expect = 0.018 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALA 206 L +LF+++G + CK++ S F+ F S A A+ KPL V Sbjct: 382 LVDLFSKYGKVIDCKIIHQSK--KPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVEFR 439 Query: 207 QRKEDRKARLQAQFSQMRPVPM--AQTVGPRMQMLPPGVPVGQQMFYGQPPAFINP 368 Q + ++ Q Q+ P PM A PR M+P P+ Q + Q A + P Sbjct: 440 QLRPMQQFSPQYQYPSY-PYPMFPAPFSPPRNAMMPIPAPMDQFSTFHQSMATLPP 494
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 37.0 bits (84), Expect = 0.024 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 +++ L +F ++G I +M+D SRG FV +S DA A +MN K + K + Sbjct: 20 NEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAI 79 Query: 192 YVALAQR 212 V A + Sbjct: 80 KVEQATK 86
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 37.0 bits (84), Expect = 0.024 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALA 155 +DT + + L+ELF FG+I+ + +D + G S+G F++F +DA+RA+A Sbjct: 248 EDTRETD-LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 298
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 37.0 bits (84), Expect = 0.024 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALA 155 +DT + + L+ELF FG+I+ + +D + G S+G F++F +DA+RA+A Sbjct: 248 EDTRETD-LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 298
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 36.2 bits (82), Expect = 0.040 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAE-MNNKMVGNK 185 + +L+ F +FG + +V R G S+G GFV F+ D+ ++ +AE MNN ++G + Sbjct: 58 EPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFE-CDEVAKIVAETMNNYLMGER 114
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 36.2 bits (82), Expect = 0.040 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 DE L +F FG I SC+V+RD G S F+ ++ A +M ++ ++ ++ Sbjct: 264 DEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKMQGVLIDDRRIH 323 Query: 195 VALAQ 209 V +Q Sbjct: 324 VDFSQ 328
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 35.8 bits (81), Expect = 0.053 Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 D LR+ F FG I V+ D G SRG GFV A RA + N + G Sbjct: 45 DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDG----- 99 Query: 195 VALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGV---PVGQQMFYGQPPAFIN 365 RKA + + +P + +Q L P + G Y PPA + Sbjct: 100 ---------RKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPAIVQ 150 Query: 366 P 368 P Sbjct: 151 P 151
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 35.8 bits (81), Expect = 0.053 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALA 206 +++LF FG++ + +V + N SRG F + S +A A++ + + + L + A Sbjct: 719 VQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYA 778 Query: 207 Q----RKEDRKARLQAQFSQ 254 Q E+ R+QA S+ Sbjct: 779 QADASNAEEEIERMQATVSK 798 Score = 34.7 bits (78), Expect = 0.12 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +3 Query: 57 ITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALAQRKEDRKARL 236 IT KV+R +G +R GFV F+S + A A+ + + + + VA+A D L Sbjct: 38 ITDVKVVRARDGKTRRFGFVGFRSDETAEAAVKYFDTSFINSTKISVAVAMTFTDPNVPL 97 Query: 237 QAQ 245 ++ Sbjct: 98 SSR 100
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 35.8 bits (81), Expect = 0.053 Identities = 22/74 (29%), Positives = 36/74 (48%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +E L+E+F + T KV ++ G S+G F+ F S +DA AL N + + + + Sbjct: 498 EETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 554 Query: 198 ALAQRKEDRKARLQ 239 L + AR Q Sbjct: 555 ELQGPRGSPNARSQ 568 Score = 32.0 bits (71), Expect = 0.76 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEM-NNKMVG 179 +DT + E L+E F G++ + V G+S+G GFV F S +DA A M + ++ G Sbjct: 580 EDTTE-ETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 636 Query: 180 NK 185 NK Sbjct: 637 NK 638 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/74 (22%), Positives = 35/74 (47%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 + +++L+E+F + I + +G S+G ++ FKS DA + L E + + + Sbjct: 404 ITEDELKEVFEDALEIR----LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 459 Query: 192 YVALAQRKEDRKAR 233 + K R+ R Sbjct: 460 SLYYTGEKGQRQER 473
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 35.8 bits (81), Expect = 0.053 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +E L+E+F + T KV ++ +G S+G F+ F S +DA AL N + + + + Sbjct: 501 EETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 557 Query: 198 ALAQRKEDRKARLQ 239 L + AR Q Sbjct: 558 ELQGPRGSPNARSQ 571 Score = 32.0 bits (71), Expect = 0.76 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEM-NNKMVG 179 +DT + E L+E F G++ + V G+S+G GFV F S +DA A M + ++ G Sbjct: 583 EDTTE-ETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 639 Query: 180 NK 185 NK Sbjct: 640 NK 641 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/74 (22%), Positives = 35/74 (47%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPL 191 + +++L+E+F + I + +G S+G ++ FKS DA + L E + + + Sbjct: 407 ITEDELKEVFEDAVEIR----LVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 462 Query: 192 YVALAQRKEDRKAR 233 + K R+ R Sbjct: 463 SLYYTGEKGQRQER 476
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 35.4 bits (80), Expect = 0.069 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +3 Query: 27 LRELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVAL 203 LR F FGT+T C V+ SR GFV + +V++A A+A + + GN Sbjct: 23 LRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRA 82 Query: 204 AQRKEDRKARLQAQFSQM 257 R++ + A+ ++ Sbjct: 83 VSREDSARPGAHAKVKKL 100
>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 239 Score = 35.4 bits (80), Expect = 0.069 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +3 Query: 18 DEKLRELFAE----FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 DE E+F E +G + V + G+ +V F+ +DA +A+ ++NN+ + Sbjct: 78 DEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 137 Query: 186 PLYVALAQRKEDRKA 230 P++ L+ + R+A Sbjct: 138 PIHAELSPVTDFREA 152
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 35.4 bits (80), Expect = 0.069 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRA 149 V +E L E F++FG I V+ D G S G G V F S A +A Sbjct: 374 VSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKA 419
>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 238 Score = 35.4 bits (80), Expect = 0.069 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +3 Query: 18 DEKLRELFAE----FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 DE E+F E +G + V + G+ +V F+ +DA +A+ ++NN+ + Sbjct: 78 DEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 137 Query: 186 PLYVALAQRKEDRKA 230 P++ L+ + R+A Sbjct: 138 PIHAELSPVTDFREA 152
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 35.4 bits (80), Expect = 0.069 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRA 149 V +E L E F++FG I V+ D G S G G V F S A +A Sbjct: 382 VSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKA 427
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 35.4 bits (80), Expect = 0.069 Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 D LR+ F FG I V+ D G SRG GFV A RA + N + G Sbjct: 24 DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG----- 78 Query: 195 VALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGV---PVGQQMFYGQPPAFIN 365 RKA + + +P + +Q L P + G Y PPA + Sbjct: 79 ---------RKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYIYPPAIVQ 129 Query: 366 P 368 P Sbjct: 130 P 130
>SUMT_PSEFL (P37725) Uroporphyrin-III C-methyltransferase (EC 2.1.1.107)| (Urogen III methylase) (SUMT) (Uroporphyrinogen III methylase) (UROM) Length = 247 Score = 35.0 bits (79), Expect = 0.090 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDAS---RALAEMNNKMVGN 182 V+ E + + A T+C + G SRG V + DD+S RALAE +V Sbjct: 108 VEVELVNGITAGLAGATNCDIPLTLRGVSRGVTLVTAHTQDDSSLNWRALAEGGTTLV-- 165 Query: 183 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQ 278 +Y+ +A+ +E R+ L+ + PV M + Sbjct: 166 --VYMGVAKLEEIRQQLLEGAMAADTPVAMIE 195
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 35.0 bits (79), Expect = 0.090 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV- 197 + L +L AE IT V + G SR F+ FK+ +DA +A+ +N V + V Sbjct: 23 KSLPQLDAE---ITDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVH 79 Query: 198 -ALAQRKEDRKARLQAQFS 251 AL R + K R ++++ Sbjct: 80 RALDYRSANEKLRPYSKYA 98
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRAL 152 E L F FG I C VM+++ +G SRG GFV F + + L Sbjct: 21 ENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVL 65
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNN 167 + +LRE F++FGT+T ++ R G S+G +V F+ + A MNN Sbjct: 54 EPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTMNN 104
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 34.7 bits (78), Expect = 0.12 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMV--GNKPL 191 + +LRE F +F + K+++ +G S+G GF+ F++ D A + ++ K + ++ L Sbjct: 80 ETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE-IRKLTPKQLEFRSRKL 138 Query: 192 YVALAQRKEDRKARLQAQFSQMRPVPM-AQTVGPRMQMLPPG-VPVGQQMFYGQPPAFIN 365 + A RK + + Q ++ P + A + GP +P P + P F+ Sbjct: 139 NLGPAIRKINSNS-FQPSYAIATPSQLVAASPGPFSYAIPASPSPYSGYSYPASPQMFVY 197 Query: 366 P 368 P Sbjct: 198 P 198
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 34.7 bits (78), Expect = 0.12 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +3 Query: 9 TVDDEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 T+ + + A+FG I+ ++ R G S+G FV F+S D A M+N + G + Sbjct: 57 TLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGER 116 Query: 186 PLYVALAQRKEDRK 227 L RK+ K Sbjct: 117 LLSCKFMPRKKVHK 130
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 34.3 bits (77), Expect = 0.15 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 E+ EL +G I C V + G S+G GFV + D A++A E+ + +G L+ Sbjct: 156 EEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALF 214
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 34.3 bits (77), Expect = 0.15 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 21 EKLRELFAEFGTITSC-KVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 E+ EL +G I C V + G S+G GFV + D A++A E+ + +G L+ Sbjct: 145 EEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASALF 203
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 34.3 bits (77), Expect = 0.15 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGN 182 +DT + E L+E F G++ + V GAS+G GFV F + +DA A M + + Sbjct: 511 EDTTE-ETLKEAFD--GSVNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDG 567 Query: 183 KPLYVALAQRKED 221 + + A+ K D Sbjct: 568 NKVTLDFAKPKGD 580
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 34.3 bits (77), Expect = 0.15 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDSN-GASRGSGFVAFKSVDDASRALAEMNNKMV 176 +++L + FA+FG + ++ R+ G SR GF+ F + +DA A MNN ++ Sbjct: 104 EKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLL 157
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 34.3 bits (77), Expect = 0.15 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +3 Query: 12 VDDEKLRELFAEFGTITSCKVMR-DSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKP 188 V D+ LR+ F G I ++ + +G +G F+ FK+ + ++ L + + + + +P Sbjct: 250 VTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRP 309 Query: 189 LYVALAQRKEDRKARLQAQ 245 L + + + R+ R + + Sbjct: 310 LRMEYGEDRSKRQVRKKVE 328
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 34.3 bits (77), Expect = 0.15 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Frame = +3 Query: 3 DDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEM-NNKMVG 179 +DT + E LRE F G+I++ V G+S+G GFV F S +DA A M + ++ G Sbjct: 562 EDTTE-ETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDG 618 Query: 180 NK 185 NK Sbjct: 619 NK 620 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/62 (19%), Positives = 30/62 (48%) Frame = +3 Query: 48 FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALAQRKEDRK 227 F +++ + G+S+G ++ FK+ +A +AL E V + + + K ++ Sbjct: 391 FENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE 450 Query: 228 AR 233 ++ Sbjct: 451 SQ 452
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = +3 Query: 12 VDDEKLRELFAE-FGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 V + +L ELF + + + K++ D G S+G GFV F + D+ AL+EM + + Sbjct: 174 VTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGR 233 Query: 186 PLYV 197 + V Sbjct: 234 AIKV 237
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 34.3 bits (77), Expect = 0.15 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Frame = +3 Query: 33 ELFAEFGTI----TSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYV 197 +LF F +I TS K++ D G SR GFV F S + AL M + +PL + Sbjct: 197 DLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRI 256 Query: 198 ALAQRK 215 ++A K Sbjct: 257 SVASPK 262
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/75 (26%), Positives = 40/75 (53%) Frame = +3 Query: 33 ELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALAQR 212 ELF+ FG + S +V + + ++RG FV F +A A+ ++ + + L + A++ Sbjct: 730 ELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789 Query: 213 KEDRKARLQAQFSQM 257 + D ++ Q S+M Sbjct: 790 ESD---DVEEQISKM 801
>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor| 38 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 264 Score = 33.9 bits (76), Expect = 0.20 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +3 Query: 18 DEKLRELFAE----FGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNK 185 D ++F E +G I V + G+ ++ F++ DA +A ++NN+ G + Sbjct: 81 DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGR 140 Query: 186 PLYVALAQRKEDRKA 230 P+Y L+ + R+A Sbjct: 141 PVYSELSPVTDFREA 155
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 33.5 bits (75), Expect = 0.26 Identities = 17/63 (26%), Positives = 32/63 (50%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALA 206 +R LF +G + S +V + + ++RG GF F S +A A+ + N + + L + A Sbjct: 718 VRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 777 Query: 207 QRK 215 + Sbjct: 778 NEE 780 Score = 29.6 bits (65), Expect = 3.8 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 17/140 (12%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVM------RDSNGASRGSGFVAFKSVDDASRALAEMNNKMV- 176 +E+ E+F S ++ R S G GFV F++ A ALA M+ + Sbjct: 610 NERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAALAAMDGYKLD 669 Query: 177 --------GNKPLYVALAQRKEDRKARLQAQFSQ--MRPVPMAQTVGPRMQMLPPGVPVG 326 NK + A +R+ED ++ A+ ++ ++ +P T + G Sbjct: 670 QHELVVRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFG---AYG 726 Query: 327 QQMFYGQPPAFINPQPGFGF 386 Q P F GFGF Sbjct: 727 QLRSVRVPKKFDRSARGFGF 746
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 33.5 bits (75), Expect = 0.26 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVAL 203 L F+ +G + K++ D SRG GFV F + + A+ MN K + + + V Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62 Query: 204 AQRKEDR 224 AQ + R Sbjct: 63 AQSRGGR 69
>YQO1_CAEEL (Q09293) Putative RNA-binding protein EEED8.1| Length = 367 Score = 33.5 bits (75), Expect = 0.26 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +3 Query: 15 DDEKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNN 167 +D L +F FG ++ C+V+ SN GFV SV DA +N+ Sbjct: 25 NDWNLFHVFQNFGKVSYCRVVGQSNDGQVQLGFVNMMSVADADEVRKNLND 75
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 33.5 bits (75), Expect = 0.26 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = +3 Query: 18 DEKLRELFAEFGTITSCKVMRDS-NGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLY 194 + L + F E +TS +++ D SRG G+V F++ D S ALA ++G +P+ Sbjct: 107 ENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGEDLMG-RPVR 163 Query: 195 VALAQ--RKEDRKARLQAQFSQMRPVPMAQ 278 + +A+ R R+ R + + P+P A+ Sbjct: 164 ITVAEPRRSFAREERSTGDWVRRGPLPPAE 193
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 33.5 bits (75), Expect = 0.26 Identities = 17/63 (26%), Positives = 32/63 (50%) Frame = +3 Query: 27 LRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVALA 206 +R LF +G + S +V + + ++RG GF F S +A A+ + N + + L + A Sbjct: 713 VRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 772 Query: 207 QRK 215 + Sbjct: 773 NEE 775 Score = 30.4 bits (67), Expect = 2.2 Identities = 24/88 (27%), Positives = 40/88 (45%) Frame = +3 Query: 21 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSVDDASRALAEMNNKMVGNKPLYVA 200 E LR+LF FG IT +++ +G VAF D+A +A + + +G+ L++ Sbjct: 492 EDLRKLFEPFGQIT--RLLMPPSGTI---AIVAFARPDEAQKAFKSLAYRKLGDSILFLE 546 Query: 201 LAQRKEDRKARLQAQFSQMRPVPMAQTV 284 A K +A P+P + V Sbjct: 547 KAP-----KDLFEADVPPQNPLPETKAV 569 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,572,562 Number of Sequences: 219361 Number of extensions: 1307687 Number of successful extensions: 5119 Number of sequences better than 10.0: 302 Number of HSP's better than 10.0 without gapping: 4454 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5028 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
