Clone Name | bart60d01 |
---|---|
Clone Library Name | barley_pub |
>gb|U81318.1|TAU81318 Triticum aestivum poly(A)-binding protein (wheatpab) mRNA, complete cds Length = 2237 Score = 773 bits (390), Expect = 0.0 Identities = 438/454 (96%) Strand = Plus / Plus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 1027 gatgatactgttgacgatgaaaagttgcgtgaactttttgctgagttcggaactattact 1086 Query: 63 tcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgctttt 122 ||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||| Sbjct: 1087 tcctgcaaggttatgcgtgattcaaacggtgctagcagaggttctggatttgtcgctttt 1146 Query: 123 aaatctgttgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 182 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1147 aaatctgctgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 1206 Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1207 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 1266 Query: 243 cagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatg 302 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1267 cagttttcacaaatgcgtcctgttccaatggctcaaactgttggtcctcgtatgcaaatg 1326 Query: 303 ttacctcctggtgttccggttggtcagcaaatgttttatggccagccaccagcgtttatt 362 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1327 ttacctcctggtgttccagttggtcagcaaatgttctatggccagccaccagcgtttatt 1386 Query: 363 aacccccagcctgggtttggcttccagcaacccttcatgcctggaatgaggccaggtggt 422 ||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 1387 aacccacagcctggatttggcttccagcaacctttcatgccgggaatgaggccaggtggt 1446 Query: 423 gctccgatgcccaactttatgatgcctatggttc 456 ||||||||||| |||||||||||||||||||||| Sbjct: 1447 gctccgatgccaaactttatgatgcctatggttc 1480
>ref|XM_450039.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2314 Score = 349 bits (176), Expect = 5e-93 Identities = 390/460 (84%), Gaps = 6/460 (1%) Strand = Plus / Plus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 1115 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 1174 Query: 63 tcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgctttt 122 ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| ||| Sbjct: 1175 tcctgcaaggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgttt 1234 Query: 123 aaatctgttgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 182 ||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1235 aaatctgctgaagatgcttcccgagctcttgccgaaatgaacagcaagatggttggcagc 1294 Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || || ||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct: 1295 aaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggca 1354 Query: 243 cagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatg 302 || ||||||||| || | || || ||| | |||| | ||||||||||| |||| ||| Sbjct: 1355 caattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatg 1414 Query: 303 ttacctcctggtgttcc---ggttggtcagcaaatgttttatggccag---ccaccagcg 356 || || ||||||||||| ||||| |||||| |||| ||||| ||| || |||||| Sbjct: 1415 tttccacctggtgttcctggagttggacagcaactgttctatggtcagccccctccagcg 1474 Query: 357 tttattaacccccagcctgggtttggcttccagcaacccttcatgcctggaatgaggcca 416 ||||| ||| | |||||||| || ||||||||||| || | |||||||| ||||||||| Sbjct: 1475 tttatcaacacacagcctggtttcggcttccagcagcctcttatgcctgggatgaggcca 1534 Query: 417 ggtggtgctccgatgcccaactttatgatgcctatggttc 456 |||| | ||| ||||| |||||||| ||||||||||||| Sbjct: 1535 ggtgcaggtccaatgccgaactttatcatgcctatggttc 1574
>ref|XM_506632.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1310_F05.15 mRNA Length = 2410 Score = 349 bits (176), Expect = 5e-93 Identities = 390/460 (84%), Gaps = 6/460 (1%) Strand = Plus / Plus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 1122 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 1181 Query: 63 tcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgctttt 122 ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| ||| Sbjct: 1182 tcctgcaaggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgttt 1241 Query: 123 aaatctgttgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 182 ||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1242 aaatctgctgaagatgcttcccgagctcttgccgaaatgaacagcaagatggttggcagc 1301 Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || || ||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct: 1302 aaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggca 1361 Query: 243 cagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatg 302 || ||||||||| || | || || ||| | |||| | ||||||||||| |||| ||| Sbjct: 1362 caattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatg 1421 Query: 303 ttacctcctggtgttcc---ggttggtcagcaaatgttttatggccag---ccaccagcg 356 || || ||||||||||| ||||| |||||| |||| ||||| ||| || |||||| Sbjct: 1422 tttccacctggtgttcctggagttggacagcaactgttctatggtcagccccctccagcg 1481 Query: 357 tttattaacccccagcctgggtttggcttccagcaacccttcatgcctggaatgaggcca 416 ||||| ||| | |||||||| || ||||||||||| || | |||||||| ||||||||| Sbjct: 1482 tttatcaacacacagcctggtttcggcttccagcagcctcttatgcctgggatgaggcca 1541 Query: 417 ggtggtgctccgatgcccaactttatgatgcctatggttc 456 |||| | ||| ||||| |||||||| ||||||||||||| Sbjct: 1542 ggtgcaggtccaatgccgaactttatcatgcctatggttc 1581
>dbj|AK101706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060I24, full insert sequence Length = 2410 Score = 349 bits (176), Expect = 5e-93 Identities = 390/460 (84%), Gaps = 6/460 (1%) Strand = Plus / Plus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 1122 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 1181 Query: 63 tcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgctttt 122 ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| ||| Sbjct: 1182 tcctgcaaggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgttt 1241 Query: 123 aaatctgttgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 182 ||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1242 aaatctgctgaagatgcttcccgagctcttgccgaaatgaacagcaagatggttggcagc 1301 Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || || ||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct: 1302 aaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggca 1361 Query: 243 cagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatg 302 || ||||||||| || | || || ||| | |||| | ||||||||||| |||| ||| Sbjct: 1362 caattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatg 1421 Query: 303 ttacctcctggtgttcc---ggttggtcagcaaatgttttatggccag---ccaccagcg 356 || || ||||||||||| ||||| |||||| |||| ||||| ||| || |||||| Sbjct: 1422 tttccacctggtgttcctggagttggacagcaactgttctatggtcagccccctccagcg 1481 Query: 357 tttattaacccccagcctgggtttggcttccagcaacccttcatgcctggaatgaggcca 416 ||||| ||| | |||||||| || ||||||||||| || | |||||||| ||||||||| Sbjct: 1482 tttatcaacacacagcctggtttcggcttccagcagcctcttatgcctgggatgaggcca 1541 Query: 417 ggtggtgctccgatgcccaactttatgatgcctatggttc 456 |||| | ||| ||||| |||||||| ||||||||||||| Sbjct: 1542 ggtgcaggtccaatgccgaactttatcatgcctatggttc 1581
>dbj|AK067816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116F07, full insert sequence Length = 2314 Score = 349 bits (176), Expect = 5e-93 Identities = 390/460 (84%), Gaps = 6/460 (1%) Strand = Plus / Plus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 1115 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 1174 Query: 63 tcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgctttt 122 ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| ||| Sbjct: 1175 tcctgcaaggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgttt 1234 Query: 123 aaatctgttgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 182 ||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 1235 aaatctgctgaagatgcttcccgagctcttgccgaaatgaacagcaagatggttggcagc 1294 Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || || ||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct: 1295 aaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggca 1354 Query: 243 cagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatg 302 || ||||||||| || | || || ||| | |||| | ||||||||||| |||| ||| Sbjct: 1355 caattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatg 1414 Query: 303 ttacctcctggtgttcc---ggttggtcagcaaatgttttatggccag---ccaccagcg 356 || || ||||||||||| ||||| |||||| |||| ||||| ||| || |||||| Sbjct: 1415 tttccacctggtgttcctggagttggacagcaactgttctatggtcagccccctccagcg 1474 Query: 357 tttattaacccccagcctgggtttggcttccagcaacccttcatgcctggaatgaggcca 416 ||||| ||| | |||||||| || ||||||||||| || | |||||||| ||||||||| Sbjct: 1475 tttatcaacacacagcctggtttcggcttccagcagcctcttatgcctgggatgaggcca 1534 Query: 417 ggtggtgctccgatgcccaactttatgatgcctatggttc 456 |||| | ||| ||||| |||||||| ||||||||||||| Sbjct: 1535 ggtgcaggtccaatgccgaactttatcatgcctatggttc 1574
>dbj|AK058316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A07, full insert sequence Length = 1482 Score = 349 bits (176), Expect = 5e-93 Identities = 390/460 (84%), Gaps = 6/460 (1%) Strand = Plus / Plus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 194 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 253 Query: 63 tcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgctttt 122 ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| ||| Sbjct: 254 tcctgcaaggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgttt 313 Query: 123 aaatctgttgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 182 ||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 314 aaatctgctgaagatgcttcccgagctcttgccgaaatgaacagcaagatggttggcagc 373 Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || || ||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct: 374 aaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggca 433 Query: 243 cagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatg 302 || ||||||||| || | || || ||| | |||| | ||||||||||| |||| ||| Sbjct: 434 caattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatg 493 Query: 303 ttacctcctggtgttcc---ggttggtcagcaaatgttttatggccag---ccaccagcg 356 || || ||||||||||| ||||| |||||| |||| ||||| ||| || |||||| Sbjct: 494 tttccacctggtgttcctggagttggacagcaactgttctatggtcagccccctccagcg 553 Query: 357 tttattaacccccagcctgggtttggcttccagcaacccttcatgcctggaatgaggcca 416 ||||| ||| | |||||||| || ||||||||||| || | |||||||| ||||||||| Sbjct: 554 tttatcaacacacagcctggtttcggcttccagcagcctcttatgcctgggatgaggcca 613 Query: 417 ggtggtgctccgatgcccaactttatgatgcctatggttc 456 |||| | ||| ||||| |||||||| ||||||||||||| Sbjct: 614 ggtgcaggtccaatgccgaactttatcatgcctatggttc 653
>dbj|AK058314.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A04, full insert sequence Length = 1208 Score = 349 bits (176), Expect = 5e-93 Identities = 390/460 (84%), Gaps = 6/460 (1%) Strand = Plus / Plus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 4 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 63 Query: 63 tcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgctttt 122 ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| ||| Sbjct: 64 tcctgcaaggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgttt 123 Query: 123 aaatctgttgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 182 ||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 124 aaatctgctgaagatgcttcccgagctcttgccgaaatgaacagcaagatggttggcagc 183 Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || || ||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct: 184 aaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggca 243 Query: 243 cagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatg 302 || ||||||||| || | || || ||| | |||| | ||||||||||| |||| ||| Sbjct: 244 caattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatg 303 Query: 303 ttacctcctggtgttcc---ggttggtcagcaaatgttttatggccag---ccaccagcg 356 || || ||||||||||| ||||| |||||| |||| ||||| ||| || |||||| Sbjct: 304 tttccacctggtgttcctggagttggacagcaactgttctatggtcagccccctccagcg 363 Query: 357 tttattaacccccagcctgggtttggcttccagcaacccttcatgcctggaatgaggcca 416 ||||| ||| | |||||||| || ||||||||||| || | |||||||| ||||||||| Sbjct: 364 tttatcaacacacagcctggtttcggcttccagcagcctcttatgcctgggatgaggcca 423 Query: 417 ggtggtgctccgatgcccaactttatgatgcctatggttc 456 |||| | ||| ||||| |||||||| ||||||||||||| Sbjct: 424 ggtgcaggtccaatgccgaactttatcatgcctatggttc 463
>gb|AF153689.1|AF153689 Oryza sativa poly(A)-binding protein gene, partial cds Length = 552 Score = 295 bits (149), Expect = 6e-77 Identities = 275/317 (86%) Strand = Plus / Plus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 171 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 230 Query: 63 tcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgctttt 122 ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| ||| Sbjct: 231 tcctgcaaggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgttt 290 Query: 123 aaatctgttgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaat 182 ||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 291 aaatctgctgaagatgcttcccgagctcttgccgaaatgaacagcaagatggttggcagc 350 Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || || ||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct: 351 aaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggca 410 Query: 243 cagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatg 302 || ||||||||| || | || || ||| | |||| | ||||||||||| |||| ||| Sbjct: 411 caattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatg 470 Query: 303 ttacctcctggtgttcc 319 || || ||||||||||| Sbjct: 471 tttccacctggtgttcc 487
>gb|AY103895.1| Zea mays PCO112590 mRNA sequence Length = 1997 Score = 222 bits (112), Expect = 8e-55 Identities = 367/450 (81%), Gaps = 9/450 (2%) Strand = Plus / Plus Query: 13 ttgatgatgaaaagttgcgagaactttttgctgagtttggaactattacttcctgcaagg 72 |||||||||| || ||||| ||||| |||||||||| ||| | ||||||||||||||||| Sbjct: 696 ttgatgatgagaaattgcgtgaactctttgctgagtatggcaatattacttcctgcaagg 755 Query: 73 ttatgcgtgattccaatggtgcaagcagaggttctggatttgttgcttttaaatctgttg 132 ||||||| ||||| ||||||| |||||||||||||||||||||||||| ||||||| || Sbjct: 756 ttatgcgggattcgaatggtgtcagcagaggttctggatttgttgctttcaaatctgctg 815 Query: 133 atgatgcttcccgagctcttgctgaaatgaacaacaagatggttggcaataaaccacttt 192 | |||||| |||||||||| | || ||||| ||| |||||||| | || || |||| Sbjct: 816 aagatgctaaccgagctcttacggagatgaatggcaaaatggttggaagcaagccccttt 875 Query: 193 atgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggcacagttttcac 252 |||| || || || ||||| || |||||||| || || | ||| |||||||| ||||||| Sbjct: 876 atgtagctcttgcgcagcgtaaagaagacagaaaggcaaagctacaggcacaattttcac 935 Query: 253 aaatgcgtcccgttccaatggctcaaactgttggtcctcgtatgcaaatgttacctcctg 312 |||||||||| ||| ||||||| | | || |||||||| |||| ||||| || |||| Sbjct: 936 aaatgcgtcctgttgcaatggcgccttcagtaggtcctcgcatgcccatgtttccacctg 995 Query: 313 gtgttcc---ggttggtcagcaaatgttttatggccag---ccaccagcgtttattaacc 366 |||| || ||||||||||| |||| ||||| ||| |||||||| || || |||| Sbjct: 996 gtgtccctggagttggtcagcagctgttctatggtcagccaccaccagccttcatcaacc 1055 Query: 367 cccagcctgggtttggcttccagcaacccttcatgcctggaatgaggccaggtggtgctc 426 | ||| |||| |||| ||||||||||| | |||||||| |||||||| ||||| || Sbjct: 1056 ctcaggctggatttgctttccagcaacctctgatgcctggtatgaggcc---tggtggtc 1112 Query: 427 cgatgcccaactttatgatgcctatggttc 456 | ||||| |||||||||||||||||||||| Sbjct: 1113 caatgccgaactttatgatgcctatggttc 1142
>gb|BT009274.1| Triticum aestivum clone wlk8.pk0015.b12:fis, full insert mRNA sequence Length = 2056 Score = 141 bits (71), Expect = 2e-30 Identities = 191/231 (82%) Strand = Plus / Plus Query: 32 agaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatgg 91 ||||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||| Sbjct: 928 agaactttttgctgaatttggcactataacttcttgcaaggttatgcgggattcaaatgg 987 Query: 92 tgcaagcagaggttctggatttgttgcttttaaatctgttgatgatgcttcccgagctct 151 | | || ||| ||||| |||||||| ||||||||| ||| |||||||| |||||||| Sbjct: 988 ggtcaacaaaggatctggttttgttgcatttaaatcttctgaagatgcttcacgagctct 1047 Query: 152 tgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacagcg 211 || | |||||| || ||||||||| ||| || ||||| || ||||| || || || Sbjct: 1048 tgtggcaatgaatggtaaaatggttggcggtaagcctctttacgtagcacttgcgcaacg 1107 Query: 212 caaggaagacaggaaagctaggctgcaggcacagttttcacaaatgcgtcc 262 ||||||||| || | ||| |||||||||||||||||||| ||||||||||| Sbjct: 1108 caaggaagaaagaagagccaggctgcaggcacagttttcgcaaatgcgtcc 1158 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 351 ccagcgtttattaacccccagcctgggtttggcttccagcaacccttcatgcctggaatg 410 ||||| ||| ||||||| |||||||| ||||| |||||||||| | || ||||||||| Sbjct: 1250 ccagcttttgttaacccacagcctggatttggtttccagcaacatatgattcctggaatg 1309 Query: 411 aggccaggtggtgctccgatgcc 433 || || |||| |||||| ||||| Sbjct: 1310 agacctggtgttgctccaatgcc 1332
>ref|XM_481529.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1983 Score = 109 bits (55), Expect = 8e-21 Identities = 187/231 (80%) Strand = Plus / Plus Query: 32 agaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatgg 91 |||| |||||||||| ||||| |||||||| || || ||||| ||| | |||| ||||| Sbjct: 1017 agaaatttttgctgattttggtactattacctcttgtaaggtcatgagagatttgaatgg 1076 Query: 92 tgcaagcagaggttctggatttgttgcttttaaatctgttgatgatgcttcccgagctct 151 || || | ||| ||||| |||||||| ||||| |||| ||| |||||||| |||||||| Sbjct: 1077 tgttagtaaaggatctggctttgttgcatttaagtctgctgaagatgcttcacgagctct 1136 Query: 152 tgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacagcg 211 || | ||||| |||||| |||||| |||||| || ||||| ||||| ||||| || Sbjct: 1137 tgtggctatgaatggtaagatgattggcagtaaacctctctatgtagcacttgcacaacg 1196 Query: 212 caaggaagacaggaaagctaggctgcaggcacagttttcacaaatgcgtcc 262 ||||||||| || | || ||||| ||||||||||| |||||||||||||| Sbjct: 1197 caaggaagaaagaagggcaaggcttcaggcacagttctcacaaatgcgtcc 1247 Score = 69.9 bits (35), Expect = 7e-09 Identities = 73/85 (85%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 334 tgttttatggccagccacc---agcgtttattaacccccagcctgggtttggcttccagc 390 ||||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||| Sbjct: 1322 tgttttatggccagccacctccagcttttgttaaccctcagcctggatttggcttccagc 1381 Query: 391 aacccttcatgcctggaatgaggcc 415 ||| |||| ||||| |||||||| Sbjct: 1382 aacatctcattcctggtatgaggcc 1406
>dbj|AK099783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096A14, full insert sequence Length = 1416 Score = 109 bits (55), Expect = 8e-21 Identities = 187/231 (80%) Strand = Plus / Plus Query: 32 agaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatgg 91 |||| |||||||||| ||||| |||||||| || || ||||| ||| | |||| ||||| Sbjct: 242 agaaatttttgctgattttggtactattacctcttgtaaggtcatgagagatttgaatgg 301 Query: 92 tgcaagcagaggttctggatttgttgcttttaaatctgttgatgatgcttcccgagctct 151 || || | ||| ||||| |||||||| ||||| |||| ||| |||||||| |||||||| Sbjct: 302 tgttagtaaaggatctggctttgttgcatttaagtctgctgaagatgcttcacgagctct 361 Query: 152 tgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacagcg 211 || | ||||| |||||| |||||| |||||| || ||||| ||||| ||||| || Sbjct: 362 tgtggctatgaatggtaagatgattggcagtaaacctctctatgtagcacttgcacaacg 421 Query: 212 caaggaagacaggaaagctaggctgcaggcacagttttcacaaatgcgtcc 262 ||||||||| || | || ||||| ||||||||||| |||||||||||||| Sbjct: 422 caaggaagaaagaagggcaaggcttcaggcacagttctcacaaatgcgtcc 472 Score = 69.9 bits (35), Expect = 7e-09 Identities = 73/85 (85%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 334 tgttttatggccagccacc---agcgtttattaacccccagcctgggtttggcttccagc 390 ||||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||| Sbjct: 547 tgttttatggccagccacctccagcttttgttaaccctcagcctggatttggcttccagc 606 Query: 391 aacccttcatgcctggaatgaggcc 415 ||| |||| ||||| |||||||| Sbjct: 607 aacatctcattcctggtatgaggcc 631
>dbj|AK104792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F09, full insert sequence Length = 1180 Score = 109 bits (55), Expect = 8e-21 Identities = 187/231 (80%) Strand = Plus / Plus Query: 32 agaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatgg 91 |||| |||||||||| ||||| |||||||| || || ||||| ||| | |||| ||||| Sbjct: 31 agaaatttttgctgattttggtactattacctcttgtaaggtcatgagagatttgaatgg 90 Query: 92 tgcaagcagaggttctggatttgttgcttttaaatctgttgatgatgcttcccgagctct 151 || || | ||| ||||| |||||||| ||||| |||| ||| |||||||| |||||||| Sbjct: 91 tgttagtaaaggatctggctttgttgcatttaagtctgctgaagatgcttcacgagctct 150 Query: 152 tgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacagcg 211 || | ||||| |||||| |||||| |||||| || ||||| ||||| ||||| || Sbjct: 151 tgtggctatgaatggtaagatgattggcagtaaacctctctatgtagcacttgcacaacg 210 Query: 212 caaggaagacaggaaagctaggctgcaggcacagttttcacaaatgcgtcc 262 ||||||||| || | || ||||| ||||||||||| |||||||||||||| Sbjct: 211 caaggaagaaagaagggcaaggcttcaggcacagttctcacaaatgcgtcc 261 Score = 69.9 bits (35), Expect = 7e-09 Identities = 73/85 (85%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 334 tgttttatggccagccacc---agcgtttattaacccccagcctgggtttggcttccagc 390 ||||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||| Sbjct: 336 tgttttatggccagccacctccagcttttgttaaccctcagcctggatttggcttccagc 395 Query: 391 aacccttcatgcctggaatgaggcc 415 ||| |||| ||||| |||||||| Sbjct: 396 aacatctcattcctggtatgaggcc 420
>dbj|AK098867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A12, full insert sequence Length = 2412 Score = 109 bits (55), Expect = 8e-21 Identities = 187/231 (80%) Strand = Plus / Plus Query: 32 agaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatgg 91 |||| |||||||||| ||||| |||||||| || || ||||| ||| | |||| ||||| Sbjct: 1184 agaaatttttgctgattttggtactattacctcttgtaaggtcatgagagatttgaatgg 1243 Query: 92 tgcaagcagaggttctggatttgttgcttttaaatctgttgatgatgcttcccgagctct 151 || || | ||| ||||| |||||||| ||||| |||| ||| |||||||| |||||||| Sbjct: 1244 tgttagtaaaggatctggctttgttgcatttaagtctgctgaagatgcttcacgagctct 1303 Query: 152 tgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacagcg 211 || | ||||| |||||| |||||| |||||| || ||||| ||||| ||||| || Sbjct: 1304 tgtggctatgaatggtaagatgattggcagtaaacctctctatgtagcacttgcacaacg 1363 Query: 212 caaggaagacaggaaagctaggctgcaggcacagttttcacaaatgcgtcc 262 ||||||||| || | || ||||| ||||||||||| |||||||||||||| Sbjct: 1364 caaggaagaaagaagggcaaggcttcaggcacagttctcacaaatgcgtcc 1414 Score = 69.9 bits (35), Expect = 7e-09 Identities = 73/85 (85%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 334 tgttttatggccagccacc---agcgtttattaacccccagcctgggtttggcttccagc 390 ||||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||| Sbjct: 1489 tgttttatggccagccacctccagcttttgttaaccctcagcctggatttggcttccagc 1548 Query: 391 aacccttcatgcctggaatgaggcc 415 ||| |||| ||||| |||||||| Sbjct: 1549 aacatctcattcctggtatgaggcc 1573
>dbj|AK065167.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C13, full insert sequence Length = 2387 Score = 109 bits (55), Expect = 8e-21 Identities = 187/231 (80%) Strand = Plus / Plus Query: 32 agaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatgg 91 |||| |||||||||| ||||| |||||||| || || ||||| ||| | |||| ||||| Sbjct: 1214 agaaatttttgctgattttggtactattacctcttgtaaggtcatgagagatttgaatgg 1273 Query: 92 tgcaagcagaggttctggatttgttgcttttaaatctgttgatgatgcttcccgagctct 151 || || | ||| ||||| |||||||| ||||| |||| ||| |||||||| |||||||| Sbjct: 1274 tgttagtaaaggatctggctttgttgcatttaagtctgctgaagatgcttcacgagctct 1333 Query: 152 tgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacagcg 211 || | ||||| |||||| |||||| |||||| || ||||| ||||| ||||| || Sbjct: 1334 tgtggctatgaatggtaagatgattggcagtaaacctctctatgtagcacttgcacaacg 1393 Query: 212 caaggaagacaggaaagctaggctgcaggcacagttttcacaaatgcgtcc 262 ||||||||| || | || ||||| ||||||||||| |||||||||||||| Sbjct: 1394 caaggaagaaagaagggcaaggcttcaggcacagttctcacaaatgcgtcc 1444 Score = 69.9 bits (35), Expect = 7e-09 Identities = 73/85 (85%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 334 tgttttatggccagccacc---agcgtttattaacccccagcctgggtttggcttccagc 390 ||||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||| Sbjct: 1519 tgttttatggccagccacctccagcttttgttaaccctcagcctggatttggcttccagc 1578 Query: 391 aacccttcatgcctggaatgaggcc 415 ||| |||| ||||| |||||||| Sbjct: 1579 aacatctcattcctggtatgaggcc 1603
>dbj|AK060952.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G03, full insert sequence Length = 1208 Score = 109 bits (55), Expect = 8e-21 Identities = 187/231 (80%) Strand = Plus / Plus Query: 32 agaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatgg 91 |||| |||||||||| ||||| |||||||| || || ||||| ||| | |||| ||||| Sbjct: 35 agaaatttttgctgattttggtactattacctcttgtaaggtcatgagagatttgaatgg 94 Query: 92 tgcaagcagaggttctggatttgttgcttttaaatctgttgatgatgcttcccgagctct 151 || || | ||| ||||| |||||||| ||||| |||| ||| |||||||| |||||||| Sbjct: 95 tgttagtaaaggatctggctttgttgcatttaagtctgctgaagatgcttcacgagctct 154 Query: 152 tgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacagcg 211 || | ||||| |||||| |||||| |||||| || ||||| ||||| ||||| || Sbjct: 155 tgtggctatgaatggtaagatgattggcagtaaacctctctatgtagcacttgcacaacg 214 Query: 212 caaggaagacaggaaagctaggctgcaggcacagttttcacaaatgcgtcc 262 ||||||||| || | || ||||| ||||||||||| |||||||||||||| Sbjct: 215 caaggaagaaagaagggcaaggcttcaggcacagttctcacaaatgcgtcc 265 Score = 69.9 bits (35), Expect = 7e-09 Identities = 73/85 (85%), Gaps = 3/85 (3%) Strand = Plus / Plus Query: 334 tgttttatggccagccacc---agcgtttattaacccccagcctgggtttggcttccagc 390 ||||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||||| Sbjct: 340 tgttttatggccagccacctccagcttttgttaaccctcagcctggatttggcttccagc 399 Query: 391 aacccttcatgcctggaatgaggcc 415 ||| |||| ||||| |||||||| Sbjct: 400 aacatctcattcctggtatgaggcc 424
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 150 cttgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacag 209 ||||| |||||||||| |||||||||||||| ||||| || || ||||| || |||||| Sbjct: 1162273 cttgccgaaatgaacagcaagatggttggcagcaaaccgctctacgttgcgcttgcacag 1162214 Query: 210 cgcaaggaagacaggaaagctaggctgcagg 240 |||||||||||||||||||| |||||||||| Sbjct: 1162213 cgcaaggaagacaggaaagcaaggctgcagg 1162183 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 70 aggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgcttttaaatctg 129 |||| ||||| ||||| ||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 1162433 aggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgtttaaatctg 1162374 Query: 130 ttgatgatgcttcccgagct 149 ||| ||||||||||||||| Sbjct: 1162373 ctgaagatgcttcccgagct 1162354 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 1162578 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 1162519 Query: 63 tcctgcaaggtt 74 |||||||||||| Sbjct: 1162518 tcctgcaaggtt 1162507 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 370 agcctgggtttggcttccagcaacccttcatgcctggaatgaggccaggtggtgctccga 429 ||||||| || ||||||||||| || | |||||||| ||||||||||||| | ||| | Sbjct: 1160803 agcctggtttcggcttccagcagcctcttatgcctgggatgaggccaggtgcaggtccaa 1160744 Query: 430 tgcccaactttatgatgcctatggttc 456 |||| |||||||| ||||||||||||| Sbjct: 1160743 tgccgaactttatcatgcctatggttc 1160717
>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1310_F05 Length = 107916 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 150 cttgctgaaatgaacaacaagatggttggcaataaaccactttatgttgcactcgcacag 209 ||||| |||||||||| |||||||||||||| ||||| || || ||||| || |||||| Sbjct: 50867 cttgccgaaatgaacagcaagatggttggcagcaaaccgctctacgttgcgcttgcacag 50808 Query: 210 cgcaaggaagacaggaaagctaggctgcagg 240 |||||||||||||||||||| |||||||||| Sbjct: 50807 cgcaaggaagacaggaaagcaaggctgcagg 50777 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Minus Query: 70 aggttatgcgtgattccaatggtgcaagcagaggttctggatttgttgcttttaaatctg 129 |||| ||||| ||||| ||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 51027 aggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgtttaaatctg 50968 Query: 130 ttgatgatgcttcccgagct 149 ||| ||||||||||||||| Sbjct: 50967 ctgaagatgcttcccgagct 50948 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 3 gatgatactgttgatgatgaaaagttgcgagaactttttgctgagtttggaactattact 62 ||||||| |||||||||||| |||||| | || ||||||||||||| ||| ||||||||| Sbjct: 51172 gatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattact 51113 Query: 63 tcctgcaaggtt 74 |||||||||||| Sbjct: 51112 tcctgcaaggtt 51101 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 370 agcctgggtttggcttccagcaacccttcatgcctggaatgaggccaggtggtgctccga 429 ||||||| || ||||||||||| || | |||||||| ||||||||||||| | ||| | Sbjct: 49397 agcctggtttcggcttccagcagcctcttatgcctgggatgaggccaggtgcaggtccaa 49338 Query: 430 tgcccaactttatgatgcctatggttc 456 |||| |||||||| ||||||||||||| Sbjct: 49337 tgccgaactttatcatgcctatggttc 49311
>gb|AF240679.1|AF240679 Cucumis sativus poly(A)-binding protein mRNA, complete cds Length = 2603 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| |||||||||||||| |||||| | |||||||| || | ||||||| |||| ||| Sbjct: 1532 aaacctctttatgttgcacttgcacagaggaaggaagatagaatagctaggttgcaagca 1591 Query: 243 cagttttcacaaatgc 258 |||||||| ||||||| Sbjct: 1592 cagttttcccaaatgc 1607 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 48 tttggaactattacttcctgcaaggttatgcgtgattccaatgg 91 |||||||| ||||| || ||||||||||||||||| ||||||| Sbjct: 1397 tttggaaccattacctcatgcaaggttatgcgtgaccccaatgg 1440 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 397 tcatgcctggaatgaggccaggtgg 421 ||||||||||||||||||| ||||| Sbjct: 1755 tcatgcctggaatgaggcctggtgg 1779
>emb|AJ505151.1|MIN505151 Mangifera indica partial mRNA for putative poly(A)-binding protein (pabp gene), cv. Alphonso Length = 392 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 194 tgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggcacagttttcaca 253 ||||||||| ||||| ||||||||||| || | ||| ||||||||||| |||||||| || Sbjct: 256 tgttgcacttgcacaacgcaaggaagatagaagagcaaggctgcaggctcagttttctca 315 Query: 254 aat 256 ||| Sbjct: 316 aat 318
>gb|BT024028.1| Zea mays clone EL01N0420H06 mRNA sequence Length = 1123 Score = 60.0 bits (30), Expect = 7e-06 Identities = 182/228 (79%), Gaps = 11/228 (4%) Strand = Plus / Plus Query: 237 caggcacagttttcacaaatgcgtcccgttccaatggctcaaactgttggtcctcgtatg 296 |||||||| ||||||||||||||||| ||| ||||||| | | || |||||||| ||| Sbjct: 109 caggcacaattttcacaaatgcgtcctgttgcaatggcgccttcagtaggtcctcgcatg 168 Query: 297 caaatgttacctcctggtgttcc---ggttggtcagcaaatgttttatggccag---cca 350 | ||||| || |||||||| || ||||||||||| |||| ||||| ||| ||| Sbjct: 169 cccatgtttccacctggtgtccctggagttggtcagcagctgttctatggtcagccacca 228 Query: 351 ccagcgtttattaacccccagcctgggtttggcttccagcaacccttcatgcctggaatg 410 ||||| || || ||||| ||| |||| |||| |||||||||| | |||||||| ||| Sbjct: 229 ccagccttcatcaaccctcaggctggatttgctttccagcaacgtctgatgcctggtatg 288 Query: 411 aggccaggtggtgctccgatgccc-aac-tttatgatgcctatggttc 456 ||||| ||||| ||| |||||| ||| ||||||||||||||||||| Sbjct: 289 aggcc---tggtggtccaatgcccgaacttttatgatgcctatggttc 333
>gb|BT016789.1| Zea mays clone Contig622 mRNA sequence Length = 1208 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 |||||| | ||||||||| | ||||||||||| ||||| || ||||| | | |||||||| Sbjct: 90 aaaccattgtatgttgcatttgcacagcgcaaagaagatagaaaagcgatgttgcaggca 149 Query: 243 cagttttcacaaatgcg 259 |||||||| || ||||| Sbjct: 150 cagttttctcagatgcg 166
>emb|AJ505583.1|MIN505583 Mangifera indica partial mRNA for putative poly(A) binding protein (pabp gene), cv. Totapuri Length = 392 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 192 tatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggcacagttttca 251 ||||||||||| ||||| |||||||||| || | ||| ||||||||||| |||||||| Sbjct: 254 tatgttgcacttgcacaacgcaaggaagttagaagagcaaggctgcaggctcagttttct 313 Query: 252 caaat 256 ||||| Sbjct: 314 caaat 318
>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence Length = 102937 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 402 cctggaatgaggccaggtggtgctccgatgcccaactttatgatgcctatggttc 456 ||||||||||| |||||||||||||| ||||| ||||| | ||||| ||||||| Sbjct: 24066 cctggaatgagaccaggtggtgctccaatgccaaacttcttcatgcccatggttc 24012
>ref|NM_127899.2| Arabidopsis thaliana PAB4; RNA binding / translation initiation factor AT2G23350 (PAB4) mRNA, complete cds Length = 2371 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 192 tatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggcacagttttca 251 |||||||| || |||||| | || ||||| |||| |||| |||||||||||||||||| Sbjct: 1351 tatgttgctcttgcacagaggaaagaagaaaggagggctaagctgcaggcacagttttct 1410 Query: 252 caaatg 257 |||||| Sbjct: 1411 caaatg 1416
>ref|XM_473087.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1980 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 57 attacttcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgtt 116 |||||||| |||||| | ||||||||| | ||||||| |||| ||| |||||||||||| Sbjct: 1039 attacttcatgcaagataatgcgtgatgcaaatggtgttagcaaagggtctggatttgtt 1098 Query: 117 gc 118 || Sbjct: 1099 gc 1100
>gb|AY079389.1| Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds Length = 2020 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 192 tatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggcacagttttca 251 |||||||| || |||||| | || ||||| |||| |||| |||||||||||||||||| Sbjct: 1195 tatgttgctcttgcacagaggaaagaagaaaggagggctaagctgcaggcacagttttct 1254 Query: 252 caaatg 257 |||||| Sbjct: 1255 caaatg 1260
>gb|AY050859.1| Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds Length = 2337 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 192 tatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggcacagttttca 251 |||||||| || |||||| | || ||||| |||| |||| |||||||||||||||||| Sbjct: 1349 tatgttgctcttgcacagaggaaagaagaaaggagggctaagctgcaggcacagttttct 1408 Query: 252 caaatg 257 |||||| Sbjct: 1409 caaatg 1414
>gb|AF360217.1| Arabidopsis thaliana putative poly(A) binding protein (At2g23350) mRNA, complete cds Length = 2385 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 192 tatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggcacagttttca 251 |||||||| || |||||| | || ||||| |||| |||| |||||||||||||||||| Sbjct: 1348 tatgttgctcttgcacagaggaaagaagaaaggagggctaagctgcaggcacagttttct 1407 Query: 252 caaatg 257 |||||| Sbjct: 1408 caaatg 1413
>dbj|AK067210.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096J03, full insert sequence Length = 2549 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 57 attacttcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgtt 116 |||||||| |||||| | ||||||||| | ||||||| |||| ||| |||||||||||| Sbjct: 1319 attacttcatgcaagataatgcgtgatgcaaatggtgttagcaaagggtctggatttgtt 1378 Query: 117 gc 118 || Sbjct: 1379 gc 1380
>dbj|AK064269.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E03, full insert sequence Length = 1496 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 57 attacttcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgtt 116 |||||||| |||||| | ||||||||| | ||||||| |||| ||| |||||||||||| Sbjct: 393 attacttcatgcaagataatgcgtgatgcaaatggtgttagcaaagggtctggatttgtt 334 Query: 117 gc 118 || Sbjct: 333 gc 332
>ref|NM_103863.2| Arabidopsis thaliana PAB8; RNA binding / translation initiation factor AT1G49760 (PAB8) mRNA, complete cds Length = 2570 Score = 50.1 bits (25), Expect = 0.006 Identities = 70/85 (82%) Strand = Plus / Plus Query: 31 gagaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatg 90 |||||| ||||||| |||||||||||||| || |||||||| |||||||| ||| || Sbjct: 1291 gagaacattttgctccctttggaactattacatcatgcaaggtgatgcgtgaccccagtg 1350 Query: 91 gtgcaagcagaggttctggatttgt 115 | | || ||||| ||||||||||| Sbjct: 1351 gagtgagtagaggatctggatttgt 1375
>gb|AY360385.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0095C12, complete sequence Length = 146632 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 168 aagatggttggcaataaaccactttatgttgcactcgcacagcgcaaggaaga 220 |||||| |||||| |||||| || ||||| ||||| ||||| ||||||||||| Sbjct: 54494 aagatgattggcagtaaacctctctatgtagcacttgcacaacgcaaggaaga 54546 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 370 agcctgggtttggcttccagcaacccttcatgcctggaatgaggcc 415 ||||||| |||||||||||||||| |||| ||||| |||||||| Sbjct: 58510 agcctggatttggcttccagcaacatctcattcctggtatgaggcc 58555 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 237 caggcacagttttcacaaatgcgtcc 262 ||||||||||| |||||||||||||| Sbjct: 54865 caggcacagttctcacaaatgcgtcc 54890
>gb|AY064622.1| Arabidopsis thaliana putative Poly-A Binding Protein (At1g49760; F14J22.3) mRNA, complete cds Length = 2091 Score = 50.1 bits (25), Expect = 0.006 Identities = 70/85 (82%) Strand = Plus / Plus Query: 31 gagaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatg 90 |||||| ||||||| |||||||||||||| || |||||||| |||||||| ||| || Sbjct: 1031 gagaacattttgctccctttggaactattacatcatgcaaggtgatgcgtgaccccagtg 1090 Query: 91 gtgcaagcagaggttctggatttgt 115 | | || ||||| ||||||||||| Sbjct: 1091 gagtgagtagaggatctggatttgt 1115
>gb|AF370517.1|AF370517 Arabidopsis thaliana Putative Poly-A Binding Protein (F14J22.3) mRNA, complete cds Length = 2509 Score = 50.1 bits (25), Expect = 0.006 Identities = 70/85 (82%) Strand = Plus / Plus Query: 31 gagaactttttgctgagtttggaactattacttcctgcaaggttatgcgtgattccaatg 90 |||||| ||||||| |||||||||||||| || |||||||| |||||||| ||| || Sbjct: 1291 gagaacattttgctccctttggaactattacatcatgcaaggtgatgcgtgaccccagtg 1350 Query: 91 gtgcaagcagaggttctggatttgt 115 | | || ||||| ||||||||||| Sbjct: 1351 gagtgagtagaggatctggatttgt 1375
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 168 aagatggttggcaataaaccactttatgttgcactcgcacagcgcaaggaaga 220 |||||| |||||| |||||| || ||||| ||||| ||||| ||||||||||| Sbjct: 13466867 aagatgattggcagtaaacctctctatgtagcacttgcacaacgcaaggaaga 13466919 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 370 agcctgggtttggcttccagcaacccttcatgcctggaatgaggcc 415 ||||||| |||||||||||||||| |||| ||||| |||||||| Sbjct: 13470883 agcctggatttggcttccagcaacatctcattcctggtatgaggcc 13470928 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 237 caggcacagttttcacaaatgcgtcc 262 ||||||||||| |||||||||||||| Sbjct: 13467238 caggcacagttctcacaaatgcgtcc 13467263
>dbj|AP005500.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451H06 Length = 136473 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 168 aagatggttggcaataaaccactttatgttgcactcgcacagcgcaaggaaga 220 |||||| |||||| |||||| || ||||| ||||| ||||| ||||||||||| Sbjct: 5181 aagatgattggcagtaaacctctctatgtagcacttgcacaacgcaaggaaga 5233 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 370 agcctgggtttggcttccagcaacccttcatgcctggaatgaggcc 415 ||||||| |||||||||||||||| |||| ||||| |||||||| Sbjct: 9197 agcctggatttggcttccagcaacatctcattcctggtatgaggcc 9242 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 237 caggcacagttttcacaaatgcgtcc 262 ||||||||||| |||||||||||||| Sbjct: 5552 caggcacagttctcacaaatgcgtcc 5577
>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_B07 Length = 118763 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 168 aagatggttggcaataaaccactttatgttgcactcgcacagcgcaaggaaga 220 |||||| |||||| |||||| || ||||| ||||| ||||| ||||||||||| Sbjct: 103594 aagatgattggcagtaaacctctctatgtagcacttgcacaacgcaaggaaga 103646 Score = 44.1 bits (22), Expect = 0.39 Identities = 40/46 (86%) Strand = Plus / Plus Query: 370 agcctgggtttggcttccagcaacccttcatgcctggaatgaggcc 415 ||||||| |||||||||||||||| |||| ||||| |||||||| Sbjct: 107610 agcctggatttggcttccagcaacatctcattcctggtatgaggcc 107655 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 237 caggcacagttttcacaaatgcgtcc 262 ||||||||||| |||||||||||||| Sbjct: 103965 caggcacagttctcacaaatgcgtcc 103990
>gb|AY103944.1| Zea mays PCO133356 mRNA sequence Length = 2499 Score = 50.1 bits (25), Expect = 0.006 Identities = 64/77 (83%) Strand = Plus / Plus Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 |||||| | ||||||||| | || |||||||| ||||| || ||||| | | |||||||| Sbjct: 1367 aaaccattgtatgttgcatttgcgcagcgcaaagaagatagaaaagcgatgttgcaggca 1426 Query: 243 cagttttcacaaatgcg 259 |||||||| || ||||| Sbjct: 1427 cagttttctcagatgcg 1443 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 57 attacttcctgcaaggttatgcgtgattccaatggtgcaagcagaggttctggatttgtt 116 |||||||| |||||||| ||||||||| |||||| |||| ||| |||||||||||| Sbjct: 1241 attacttcatgcaaggtgatgcgtgatcaaaatggtcttagcaaaggctctggatttgtt 1300 Query: 117 gcttt 121 ||||| Sbjct: 1301 gcttt 1305
>gb|AF349964.1| Daucus carota poly(A)-binding protein mRNA, complete cds Length = 2491 Score = 46.1 bits (23), Expect = 0.100 Identities = 59/71 (83%) Strand = Plus / Plus Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 |||||||| ||||||||||| || ||| | || ||||| || | ||||||| | ||||| Sbjct: 1381 aaaccactctatgttgcacttgctcagaggaaagaagaaagaagagctaggttacaggcc 1440 Query: 243 cagttttcaca 253 ||||||||||| Sbjct: 1441 cagttttcaca 1451
>gb|DQ455597.1| Phaseolus vulgaris poly-A binding protein mRNA, partial cds Length = 516 Score = 46.1 bits (23), Expect = 0.100 Identities = 56/67 (83%) Strand = Plus / Plus Query: 227 agctaggctgcaggcacagttttcacaaatgcgtcccgttccaatggctcaaactgttgg 286 ||||||||||||||| |||||| | |||||||| || ||| |||| | | | ||||||| Sbjct: 174 agctaggctgcaggctcagtttgctcaaatgcggcctgttggaatgccaccatctgttgg 233 Query: 287 tcctcgt 293 ||||||| Sbjct: 234 tcctcgt 240
>gb|DQ440228.1| Aedes aegypti clone AET-265 polyadenylate-binding protein mRNA, complete cds Length = 1887 Score = 44.1 bits (22), Expect = 0.39 Identities = 34/38 (89%) Strand = Plus / Plus Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaaga 220 ||||| || |||||||| || ||||||||||||||||| Sbjct: 1057 aaaccgctatatgttgcccttgcacagcgcaaggaaga 1094
>ref|XM_638964.1| Dictyostelium discoideum hypothetical protein (DDB0167766), partial mRNA Length = 3423 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 tagatgatactgttgatgatg 21 ||||||||||||||||||||| Sbjct: 2431 tagatgatactgttgatgatg 2411
>ref|XM_635095.1| Dictyostelium discoideum hypothetical protein (DDB0218401), partial mRNA Length = 9243 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gatgatactgttgatgatgaa 23 ||||||||||||||||||||| Sbjct: 5441 gatgatactgttgatgatgaa 5421
>ref|XM_513390.1| PREDICTED: Pan troglodytes similar to UMP-CMP kinase (LOC456837), mRNA Length = 591 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 tgcttttaaatctgttgatga 136 ||||||||||||||||||||| Sbjct: 528 tgcttttaaatctgttgatga 548
>gb|AC092174.5| Homo sapiens BAC clone RP13-522B14 from 7, complete sequence Length = 158187 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 tcctgcaaggttatgcgtgat 83 ||||||||||||||||||||| Sbjct: 29580 tcctgcaaggttatgcgtgat 29600
>gb|AC117070.2| Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence Length = 136240 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tagatgatactgttgatgatg 21 ||||||||||||||||||||| Sbjct: 20005 tagatgatactgttgatgatg 20025
>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence Length = 192819 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 gttggcaataaaccacttta 193 |||||||||||||||||||| Sbjct: 83050 gttggcaataaaccacttta 83031
>gb|AC147563.4| Mus musculus BAC clone RP23-231H21 from chromosome 10, complete sequence Length = 236428 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 atctgttgatgatgcttccc 144 |||||||||||||||||||| Sbjct: 137946 atctgttgatgatgcttccc 137965
>gb|AY811262.1| Schistosoma japonicum SJCHGC02708 protein mRNA, partial cds Length = 987 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tgatactgttgatgatgaaa 24 |||||||||||||||||||| Sbjct: 218 tgatactgttgatgatgaaa 199
>ref|XM_905410.2| PREDICTED: Mus musculus similar to interferon induced transmembrane protein 2 (LOC631287), mRNA Length = 715 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ctcgtatgcaaatgttacct 308 |||||||||||||||||||| Sbjct: 623 ctcgtatgcaaatgttacct 642
>gb|AC122810.4| Mus musculus BAC clone RP23-276H4 from chromosome 10, complete sequence Length = 177681 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 atctgttgatgatgcttccc 144 |||||||||||||||||||| Sbjct: 123785 atctgttgatgatgcttccc 123804
>gb|AF522873.1| Leptosphaeria maculans aspartyl proteinase, UDP-glucose:sterol glycosyltransferase (ugt51), and RNA polymerase II C-terminal domain phosphatase component genes, complete cds Length = 10868 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 gctaggctgcaggcacagtt 247 |||||||||||||||||||| Sbjct: 34 gctaggctgcaggcacagtt 53
>emb|Z94160.1|HS63G5 Human DNA sequence from clone RP1-63G5 on chromosome 22q12.3-13.1, complete sequence Length = 97585 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 cctggaatgaggccaggtggtgct 425 ||||| |||||||||||||||||| Sbjct: 71651 cctgggatgaggccaggtggtgct 71628
>gb|AC124037.5| Mus Musculus chromosome 4 BAC, clone CT7-104L5 strain 129Sv ES cell line, Complete Sequence, complete sequence Length = 134412 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 cctgggtttggcttccagca 391 |||||||||||||||||||| Sbjct: 4415 cctgggtttggcttccagca 4396
>emb|Z26042.1|HAPABP A.phyllitidis PABP mRNA for poly(A)-binding protein Length = 2409 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 168 aagatggttggcaataaaccactttatgttgcactcgcacagcg 211 ||||||||||| | ||||||| | |||||||| || |||||||| Sbjct: 1398 aagatggttggaagtaaaccattatatgttgctctggcacagcg 1441
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 75 atgcgtgattccaatggtgcaagcagaggttctggatttgttgc 118 ||||||||| | ||||||| |||| ||| |||||||||||||| Sbjct: 55033 atgcgtgatgcaaatggtgttagcaaagggtctggatttgttgc 54990
>emb|AL596090.11| Mouse DNA sequence from clone RP23-135F6 on chromosome 11 Contains the 5' end of the gene for the likely ortholog of H. sapiens target of myb1-like 2 (chicken) (TOM1L2) (A730055F12Rik), a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, the gene for a novel Leucine Rich Repeat domain-containing protein (4930449E07Rik), the Atpaf2 gene for ATP synthase mitochondrial F1 complex assembly factor 2, the gene for a novel protein (4933439F18Rik), an acid phosphatase 1 soluble (Acp1) pseudogene, a ribosomal protein S4, X-linked (Rps4x) pseudogene, the Drg2 gene for developmentally regulated GTP binding protein 2, the 5' end of the Myo15 gene for myosin XV and four CpG islands, complete sequence Length = 207440 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cctgggtttggcttccagca 391 |||||||||||||||||||| Sbjct: 40933 cctgggtttggcttccagca 40952
>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence Length = 95814 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 atgatactgttgatgatgaa 23 |||||||||||||||||||| Sbjct: 73847 atgatactgttgatgatgaa 73866
>gb|AC010043.7| Drosophila melanogaster 3L BAC RP98-12K4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184657 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 tgttgcttttaaatctgttgatga 136 |||||||||||||||| ||||||| Sbjct: 27354 tgttgcttttaaatctattgatga 27331
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gatactgttgatgatgaaaa 25 |||||||||||||||||||| Sbjct: 398587 gatactgttgatgatgaaaa 398568
>dbj|AK143369.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330017N04 product:unclassifiable, full insert sequence Length = 2695 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gaaagctaggctgcaggcac 243 |||||||||||||||||||| Sbjct: 914 gaaagctaggctgcaggcac 933
>gb|AC012346.9|AC012346 Homo sapiens chromosome , clone RP11-15N22, complete sequence Length = 164470 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 154 ctgaaatgaacaacaagatggttggcaa 181 |||| |||||||||||||||||| |||| Sbjct: 144784 ctgacatgaacaacaagatggttagcaa 144811
>gb|AC025508.7|AC025508 Homo sapiens, clone RP11-659A24, complete sequence Length = 193598 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 154 ctgaaatgaacaacaagatggttggcaa 181 |||| |||||||||||||||||| |||| Sbjct: 20960 ctgacatgaacaacaagatggttagcaa 20987
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 75 atgcgtgattccaatggtgcaagcagaggttctggatttgttgc 118 ||||||||| | ||||||| |||| ||| |||||||||||||| Sbjct: 25173366 atgcgtgatgcaaatggtgttagcaaagggtctggatttgttgc 25173323
>ref|XM_228806.3| PREDICTED: Rattus norvegicus similar to Ubiquilin 2 (LOC317396), mRNA Length = 3387 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gcctggaatgaggccaggtg 420 |||||||||||||||||||| Sbjct: 1720 gcctggaatgaggccaggtg 1701
>gb|AF190656.1|AF190656 Nicotiana tabacum clone 1 poly(A)-binding protein (PABP1) mRNA, partial cds Length = 1231 Score = 40.1 bits (20), Expect = 6.1 Identities = 65/80 (81%) Strand = Plus / Plus Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || |||||||| || || || ||||||||||| || | ||| ||| | ||||| Sbjct: 174 aaacctctgtatgttgcccttgcgcaacgcaaggaagagagaagagcaaggttacaggct 233 Query: 243 cagttttcacaaatgcgtcc 262 |||||||| || |||||||| Sbjct: 234 cagttttctcagatgcgtcc 253
>gb|AF190655.1|AF190655 Nicotiana tabacum poly(A)-binding protein (PABP) mRNA, complete cds Length = 2364 Score = 40.1 bits (20), Expect = 6.1 Identities = 65/80 (81%) Strand = Plus / Plus Query: 183 aaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcaggca 242 ||||| || |||||||| || || || ||||||||||| || | ||| ||| | ||||| Sbjct: 1269 aaacctctgtatgttgcccttgcgcaacgcaaggaagagagaagagcaaggttacaggct 1328 Query: 243 cagttttcacaaatgcgtcc 262 |||||||| || |||||||| Sbjct: 1329 cagttttctcagatgcgtcc 1348
>gb|AE003551.3| Drosophila melanogaster chromosome 3L, section 34 of 83 of the complete sequence Length = 285860 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 tgttgcttttaaatctgttgatga 136 |||||||||||||||| ||||||| Sbjct: 27153 tgttgcttttaaatctattgatga 27130
>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete sequence Length = 491220 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gttggcaataaaccacttta 193 |||||||||||||||||||| Sbjct: 338039 gttggcaataaaccacttta 338058
>gb|AC161446.3| Mus musculus BAC clone RP24-260B15 from chromosome 13, complete sequence Length = 181988 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gaaagctaggctgcaggcac 243 |||||||||||||||||||| Sbjct: 144810 gaaagctaggctgcaggcac 144791
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 75 atgcgtgattccaatggtgcaagcagaggttctggatttgttgc 118 ||||||||| | ||||||| |||| ||| |||||||||||||| Sbjct: 120793 atgcgtgatgcaaatggtgttagcaaagggtctggatttgttgc 120750
>dbj|AB231868.1| Nematostella vectensis genes for zinc finger proteins Nv-ZicB, Nv-ZicC, Nv-ZicD, Nv-ZicE, complete cds Length = 177971 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 aaatgaacaacaagatggtt 176 |||||||||||||||||||| Sbjct: 129512 aaatgaacaacaagatggtt 129531
>emb|AL671866.8| Mouse DNA sequence from clone RP23-59L24 on chromosome 4, complete sequence Length = 230447 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cctgggtttggcttccagca 391 |||||||||||||||||||| Sbjct: 165229 cctgggtttggcttccagca 165248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,729,568 Number of Sequences: 3902068 Number of extensions: 4729568 Number of successful extensions: 86047 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85770 Number of HSP's gapped (non-prelim): 261 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)