ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY523572.1| Zea mays brassinosteroid biosynthesis-like protei... 353 3e-94
2gb|AY104065.1| Zea mays PCO076650 mRNA sequence 353 3e-94
3ref|NM_196346.1| Oryza sativa (japonica cultivar-group) putative... 178 8e-42
4gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar N... 178 8e-42
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 178 8e-42
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 178 8e-42
7ref|NM_180285.1| Arabidopsis thaliana DWF1 (DIMINUTO 1); catalyt... 42 1.3
8ref|NM_112872.2| Arabidopsis thaliana DWF1 (DIMINUTO 1); catalyt... 42 1.3
9gb|AC153147.7| Mus musculus BAC clone RP23-205D14 from chromosom... 42 1.3
10ref|XM_543100.2| PREDICTED: Canis familiaris similar to Glucocor... 42 1.3
11gb|BT000367.1| Arabidopsis thaliana unknown protein mRNA, comple... 42 1.3
12gb|AY096472.1| Arabidopsis thaliana putative cell elongation pro... 42 1.3
13gb|AY072216.1| Arabidopsis thaliana putative cell elongation pro... 42 1.3
14gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 1.3
15gb|AC015743.9| Homo sapiens chromosome 8, clone RP11-1G11, compl... 42 1.3
16gb|AY081286.1| Arabidopsis thaliana unknown protein mRNA, comple... 42 1.3
17gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.3
18dbj|AB025631.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.3
19ref|NM_210870.1| Eremothecium gossypii AFL032Cp (AFL032C), mRNA 42 1.3
20gb|AC015564.13| Homo sapiens chromosome 8, clone RP11-351D9, com... 42 1.3
21gb|L38520.1|ATHDIM Arabidopsis thaliana diminuto (DIM) mRNA, com... 42 1.3
22gb|U12400.1|ATU12400 Arabidopsis thaliana Columbia Dwarf1 (DWF1)... 42 1.3
23gb|AY974807.1| Cuscuta reflexa 9-cis-epoxycarotenoid dioxygenase... 40 5.0
24ref|XM_582132.2| PREDICTED: Bos taurus similar to ATP-binding ca... 40 5.0
25ref|XM_414580.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 5.0
26ref|XM_387855.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 5.0
27gb|AC140207.3| Mus musculus BAC clone RP24-446P10 from chromosom... 40 5.0
28gb|DQ358700.1| Nematostella vectensis chordin mRNA, complete cds 40 5.0
29emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, com... 40 5.0
30gb|BT009257.1| Triticum aestivum clone wlk4.pk0012.c10:fis, full... 40 5.0
31emb|AL583921.1|MLEPRTN5 Mycobacterium leprae strain TN complete ... 40 5.0
32gb|AC079096.4| Homo sapiens chromosome 18, clone RP11-75N4, comp... 40 5.0
33gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, co... 40 5.0
34gb|AC158388.2| Mus musculus BAC clone RP24-545I9 from chromosome... 40 5.0
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
36gb|AC105922.5| Homo sapiens BAC clone RP11-548K13 from 2, comple... 40 5.0
37emb|BX934896.1| Gallus gallus finished cDNA, clone ChEST14c11 40 5.0
38dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
39dbj|AB020738.1| Tenebrio molitor mRNA for prophenoloxidase, comp... 40 5.0
40gb|U00017.1|U00017 Mycobacterium leprae cosmid B2126 40 5.0 
>gb|AY523572.1| Zea mays brassinosteroid biosynthesis-like protein (DWF1) mRNA,
           complete cds
          Length = 2005

 Score =  353 bits (178), Expect = 3e-94
 Identities = 253/278 (91%)
 Strand = Plus / Plus

                                                                       
Query: 87  aagaggaagaaggttctggtggactacctggtgcagttccgatggatcctcgtcatcttc 146
           ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 160 aagaggaagaaggttttggtggactacttggtgaagttccgatggatcctcgtgatcttc 219

                                                                       
Query: 147 gtggtccttccggcctccgctctcatctacttcaacatctacctgggcgacatgtggtct 206
           |||||||||||    ||  |||| |||||||||||||||| |||||||||||||||||| 
Sbjct: 220 gtggtccttcctatttcaactctgatctacttcaacatcttcctgggcgacatgtggtcc 279

                                                                       
Query: 207 gccatgaagtcggagaagaagcgccagaaggagcacgatgacaacgtgcagaaggtcgtc 266
           |||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| 
Sbjct: 280 gccatgaagtcggagaagaagcgccagaagcagcacgacgagaacgtgcagaaggtcgtg 339

                                                                       
Query: 267 aagcggctcaagcagcgcaaccccaagaaggacggcctcgtctgcacggccaggaagccc 326
           ||||||||||||||| | ||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 340 aagcggctcaagcagaggaacccgaagaaggacggtcttgtttgcacggccaggaagccc 399

                                                 
Query: 327 tggatcgccgtcggcatgcgcaacgtggactacaagcg 364
           |||||||| || ||||||||||||||||||||||||||
Sbjct: 400 tggatcgctgttggcatgcgcaacgtggactacaagcg 437
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>gb|AY104065.1| Zea mays PCO076650 mRNA sequence
          Length = 1990

 Score =  353 bits (178), Expect = 3e-94
 Identities = 253/278 (91%)
 Strand = Plus / Plus

                                                                       
Query: 87  aagaggaagaaggttctggtggactacctggtgcagttccgatggatcctcgtcatcttc 146
           ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 131 aagaggaagaaggttttggtggactacttggtgaagttccgatggatcctcgtgatcttc 190

                                                                       
Query: 147 gtggtccttccggcctccgctctcatctacttcaacatctacctgggcgacatgtggtct 206
           |||||||||||    ||  |||| |||||||||||||||| |||||||||||||||||| 
Sbjct: 191 gtggtccttcctatttcaactctgatctacttcaacatcttcctgggcgacatgtggtcc 250

                                                                       
Query: 207 gccatgaagtcggagaagaagcgccagaaggagcacgatgacaacgtgcagaaggtcgtc 266
           |||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| 
Sbjct: 251 gccatgaagtcggagaagaagcgccagaagcagcacgacgagaacgtgcagaaggtcgtg 310

                                                                       
Query: 267 aagcggctcaagcagcgcaaccccaagaaggacggcctcgtctgcacggccaggaagccc 326
           ||||||||||||||| | ||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 311 aagcggctcaagcagaggaacccgaagaaggacggtcttgtttgcacggccaggaagccc 370

                                                 
Query: 327 tggatcgccgtcggcatgcgcaacgtggactacaagcg 364
           |||||||| || ||||||||||||||||||||||||||
Sbjct: 371 tggatcgctgttggcatgcgcaacgtggactacaagcg 408
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>ref|NM_196346.1| Oryza sativa (japonica cultivar-group) putative Cell elongation
           protein DIMINUTO (Cell elongation protein Dwarf1)
           (OSJNBb0058B20.18), mRNA
          Length = 1686

 Score =  178 bits (90), Expect = 8e-42
 Identities = 231/278 (83%)
 Strand = Plus / Plus

                                                                       
Query: 87  aagaggaagaaggttctggtggactacctggtgcagttccgatggatcctcgtcatcttc 146
           ||||||||||||||| ||||||||||| ||||  ||||||||||||| || || ||||| 
Sbjct: 34  aagaggaagaaggttttggtggactacttggtaaagttccgatggattctggtgatcttt 93

                                                                       
Query: 147 gtggtccttccggcctccgctctcatctacttcaacatctacctgggcgacatgtggtct 206
           ||||| || ||    |||||||| ||||||||||| |||||  |||||||  | ||||||
Sbjct: 94  gtggtgctccccatttccgctctgatctacttcaatatctatttgggcgatgtctggtct 153

                                                                       
Query: 207 gccatgaagtcggagaagaagcgccagaaggagcacgatgacaacgtgcagaaggtcgtc 266
           |||||||| || |||||    ||||||||||| || |||||||| ||||| || || || 
Sbjct: 154 gccatgaaatctgagaaacgtcgccagaaggaacatgatgacaatgtgcaaaaagttgtg 213

                                                                       
Query: 267 aagcggctcaagcagcgcaaccccaagaaggacggcctcgtctgcacggccaggaagccc 326
           ||||||||||||||| | ||||| |||||||| ||||| || ||||| || |||||||||
Sbjct: 214 aagcggctcaagcagaggaacccaaagaaggatggccttgtttgcacagctaggaagccc 273

                                                 
Query: 327 tggatcgccgtcggcatgcgcaacgtggactacaagcg 364
           ||||| || || ||||||||||| || |||||||||||
Sbjct: 274 tggattgctgttggcatgcgcaatgtagactacaagcg 311
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>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OSJNBb0058B20 from chromosome 10, complete sequence
          Length = 156232

 Score =  178 bits (90), Expect = 8e-42
 Identities = 231/278 (83%)
 Strand = Plus / Plus

                                                                         
Query: 87    aagaggaagaaggttctggtggactacctggtgcagttccgatggatcctcgtcatcttc 146
             ||||||||||||||| ||||||||||| ||||  ||||||||||||| || || ||||| 
Sbjct: 74313 aagaggaagaaggttttggtggactacttggtaaagttccgatggattctggtgatcttt 74372

                                                                         
Query: 147   gtggtccttccggcctccgctctcatctacttcaacatctacctgggcgacatgtggtct 206
             ||||| || ||    |||||||| ||||||||||| |||||  |||||||  | ||||||
Sbjct: 74373 gtggtgctccccatttccgctctgatctacttcaatatctatttgggcgatgtctggtct 74432

                                                                         
Query: 207   gccatgaagtcggagaagaagcgccagaaggagcacgatgacaacgtgcagaaggtcgtc 266
             |||||||| || |||||    ||||||||||| || |||||||| ||||| || || || 
Sbjct: 74433 gccatgaaatctgagaaacgtcgccagaaggaacatgatgacaatgtgcaaaaagttgtg 74492

                                                                         
Query: 267   aagcggctcaagcagcgcaaccccaagaaggacggcctcgtctgcacggccaggaagccc 326
             ||||||||||||||| | ||||| |||||||| ||||| || ||||| || |||||||||
Sbjct: 74493 aagcggctcaagcagaggaacccaaagaaggatggccttgtttgcacagctaggaagccc 74552

                                                   
Query: 327   tggatcgccgtcggcatgcgcaacgtggactacaagcg 364
             ||||| || || ||||||||||| || |||||||||||
Sbjct: 74553 tggattgctgttggcatgcgcaatgtagactacaagcg 74590
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  178 bits (90), Expect = 8e-42
 Identities = 231/278 (83%)
 Strand = Plus / Minus

                                                                            
Query: 87       aagaggaagaaggttctggtggactacctggtgcagttccgatggatcctcgtcatcttc 146
                ||||||||||||||| ||||||||||| ||||  ||||||||||||| || || ||||| 
Sbjct: 12846537 aagaggaagaaggttttggtggactacttggtaaagttccgatggattctggtgatcttt 12846478

                                                                            
Query: 147      gtggtccttccggcctccgctctcatctacttcaacatctacctgggcgacatgtggtct 206
                ||||| || ||    |||||||| ||||||||||| |||||  |||||||  | ||||||
Sbjct: 12846477 gtggtgctccccatttccgctctgatctacttcaatatctatttgggcgatgtctggtct 12846418

                                                                            
Query: 207      gccatgaagtcggagaagaagcgccagaaggagcacgatgacaacgtgcagaaggtcgtc 266
                |||||||| || |||||    ||||||||||| || |||||||| ||||| || || || 
Sbjct: 12846417 gccatgaaatctgagaaacgtcgccagaaggaacatgatgacaatgtgcaaaaagttgtg 12846358

                                                                            
Query: 267      aagcggctcaagcagcgcaaccccaagaaggacggcctcgtctgcacggccaggaagccc 326
                ||||||||||||||| | ||||| |||||||| ||||| || ||||| || |||||||||
Sbjct: 12846357 aagcggctcaagcagaggaacccaaagaaggatggccttgtttgcacagctaggaagccc 12846298

                                                      
Query: 327      tggatcgccgtcggcatgcgcaacgtggactacaagcg 364
                ||||| || || ||||||||||| || |||||||||||
Sbjct: 12846297 tggattgctgttggcatgcgcaatgtagactacaagcg 12846260
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  178 bits (90), Expect = 8e-42
 Identities = 231/278 (83%)
 Strand = Plus / Minus

                                                                            
Query: 87       aagaggaagaaggttctggtggactacctggtgcagttccgatggatcctcgtcatcttc 146
                ||||||||||||||| ||||||||||| ||||  ||||||||||||| || || ||||| 
Sbjct: 12853877 aagaggaagaaggttttggtggactacttggtaaagttccgatggattctggtgatcttt 12853818

                                                                            
Query: 147      gtggtccttccggcctccgctctcatctacttcaacatctacctgggcgacatgtggtct 206
                ||||| || ||    |||||||| ||||||||||| |||||  |||||||  | ||||||
Sbjct: 12853817 gtggtgctccccatttccgctctgatctacttcaatatctatttgggcgatgtctggtct 12853758

                                                                            
Query: 207      gccatgaagtcggagaagaagcgccagaaggagcacgatgacaacgtgcagaaggtcgtc 266
                |||||||| || |||||    ||||||||||| || |||||||| ||||| || || || 
Sbjct: 12853757 gccatgaaatctgagaaacgtcgccagaaggaacatgatgacaatgtgcaaaaagttgtg 12853698

                                                                            
Query: 267      aagcggctcaagcagcgcaaccccaagaaggacggcctcgtctgcacggccaggaagccc 326
                ||||||||||||||| | ||||| |||||||| ||||| || ||||| || |||||||||
Sbjct: 12853697 aagcggctcaagcagaggaacccaaagaaggatggccttgtttgcacagctaggaagccc 12853638

                                                      
Query: 327      tggatcgccgtcggcatgcgcaacgtggactacaagcg 364
                ||||| || || ||||||||||| || |||||||||||
Sbjct: 12853637 tggattgctgttggcatgcgcaatgtagactacaagcg 12853600
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>ref|NM_180285.1| Arabidopsis thaliana DWF1 (DIMINUTO 1); catalytic AT3G19820 (DWF1)
           transcript variant AT3G19820.2 mRNA, complete cds
          Length = 1963

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
           |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 301 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 360

                    
Query: 354 gactacaag 362
           |||||||||
Sbjct: 361 gactacaag 369
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>ref|NM_112872.2| Arabidopsis thaliana DWF1 (DIMINUTO 1); catalytic AT3G19820 (DWF1)
           transcript variant AT3G19820.1 mRNA, complete cds
          Length = 1940

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
           |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 277 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 336

                    
Query: 354 gactacaag 362
           |||||||||
Sbjct: 337 gactacaag 345
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>gb|AC153147.7| Mus musculus BAC clone RP23-205D14 from chromosome 12, complete
             sequence
          Length = 206281

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    tcttcttcttcaaagaagaag 40
             |||||||||||||||||||||
Sbjct: 55539 tcttcttcttcaaagaagaag 55559
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>ref|XM_543100.2| PREDICTED: Canis familiaris similar to Glucocorticoid modulatory
           element binding protein 2 (GMEB-2) (Parvovirus
           initiation factor p79) (PIF p79) (DNA binding protein
           p79PIF) (LOC485975), mRNA
          Length = 1611

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 7   ctccaggctctcctcttcttc 27
           |||||||||||||||||||||
Sbjct: 261 ctccaggctctcctcttcttc 241
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>gb|BT000367.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 1729

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
           |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 241 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 300

                    
Query: 354 gactacaag 362
           |||||||||
Sbjct: 301 gactacaag 309
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>gb|AY096472.1| Arabidopsis thaliana putative cell elongation protein Dwarf1
           (At3g19820) mRNA, complete cds
          Length = 1717

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
           |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 241 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 300

                    
Query: 354 gactacaag 362
           |||||||||
Sbjct: 301 gactacaag 309
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>gb|AY072216.1| Arabidopsis thaliana putative cell elongation protein Dwarf1
           (At3g19820) mRNA, complete cds
          Length = 1945

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
           |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 301 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 360

                    
Query: 354 gactacaag 362
           |||||||||
Sbjct: 361 gactacaag 369
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 106     tggactacctggtgcagttcc 126
               |||||||||||||||||||||
Sbjct: 1984979 tggactacctggtgcagttcc 1984999
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>gb|AC015743.9| Homo sapiens chromosome 8, clone RP11-1G11, complete sequence
          Length = 193989

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 8      tccaggctctcctcttcttct 28
              |||||||||||||||||||||
Sbjct: 117919 tccaggctctcctcttcttct 117899
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>gb|AY081286.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 1921

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
           |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 301 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 360

                    
Query: 354 gactacaag 362
           |||||||||
Sbjct: 361 gactacaag 369
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 272    gctcaagcagcgcaaccccaagaag 296
              ||||||||||| |||||||||||||
Sbjct: 374806 gctcaagcagctcaaccccaagaag 374782
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>dbj|AB025631.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPN9
          Length = 81035

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                         
Query: 294   aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
             |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 14151 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 14092

                      
Query: 354   gactacaag 362
             |||||||||
Sbjct: 14091 gactacaag 14083
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>ref|NM_210870.1| Eremothecium gossypii AFL032Cp (AFL032C), mRNA
          Length = 1116

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 272 gctcaagcagcgcaaccccaagaag 296
           ||||||||||| |||||||||||||
Sbjct: 936 gctcaagcagctcaaccccaagaag 960
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>gb|AC015564.13| Homo sapiens chromosome 8, clone RP11-351D9, complete sequence
          Length = 193425

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    tccaggctctcctcttcttct 28
            |||||||||||||||||||||
Sbjct: 3093 tccaggctctcctcttcttct 3073
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>gb|L38520.1|ATHDIM Arabidopsis thaliana diminuto (DIM) mRNA, complete cds
          Length = 1940

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
           |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 277 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 336

                    
Query: 354 gactacaag 362
           |||||||||
Sbjct: 337 gactacaag 345
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>gb|U12400.1|ATU12400 Arabidopsis thaliana Columbia Dwarf1 (DWF1) mRNA, complete cds
          Length = 1895

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 294 aaggacggcctcgtctgcacggccaggaagccctggatcgccgtcggcatgcgcaacgtg 353
           |||||||| || |||||||| ||  | |||||||||||||| || || ||| | ||||| 
Sbjct: 256 aaggacgggcttgtctgcactgctcgtaagccctggatcgctgttggaatgaggaacgtt 315

                    
Query: 354 gactacaag 362
           |||||||||
Sbjct: 316 gactacaag 324
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>gb|AY974807.1| Cuscuta reflexa 9-cis-epoxycarotenoid dioxygenase 1 gene, complete
           cds
          Length = 1900

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 18  cctcttcttcttcaaagaag 37
           ||||||||||||||||||||
Sbjct: 122 cctcttcttcttcaaagaag 141
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>ref|XM_582132.2| PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family A
           member 3 (LOC505787), mRNA
          Length = 5281

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 ctgcacggccaggaagccct 327
           ||||||||||||||||||||
Sbjct: 378 ctgcacggccaggaagccct 359
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>ref|XM_414580.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 1810073G14
            (LOC416262), mRNA
          Length = 2394

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   tcctcttcttcttcaaagaa 36
            ||||||||||||||||||||
Sbjct: 1079 tcctcttcttcttcaaagaa 1060
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>ref|XM_387855.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07679.1)
           partial mRNA
          Length = 834

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 tgaagtcggagaagaagcgc 230
           ||||||||||||||||||||
Sbjct: 106 tgaagtcggagaagaagcgc 87
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>gb|AC140207.3| Mus musculus BAC clone RP24-446P10 from chromosome 18, complete sequence
          Length = 185316

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     ggtggggggaccaaagagga 93
              ||||||||||||||||||||
Sbjct: 125935 ggtggggggaccaaagagga 125954
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>gb|DQ358700.1| Nematostella vectensis chordin mRNA, complete cds
          Length = 2688

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 acggcctcgtctgcacggcc 317
           ||||||||||||||||||||
Sbjct: 367 acggcctcgtctgcacggcc 386
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>emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, complete sequence
          Length = 270722

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     ccaaagaggaagaaggttctggtg 107
              ||||||||||||||| ||||||||
Sbjct: 162989 ccaaagaggaagaagtttctggtg 163012
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>gb|BT009257.1| Triticum aestivum clone wlk4.pk0012.c10:fis, full insert mRNA
           sequence
          Length = 961

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 225 aagcgccagaaggagcacgatgacaacg 252
           ||||||| ||||||||||| ||||||||
Sbjct: 344 aagcgccggaaggagcacggtgacaacg 371
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>emb|AL583921.1|MLEPRTN5 Mycobacterium leprae strain TN complete genome; segment 5/10
          Length = 332450

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    cgtggtccttccggcctccg 165
              ||||||||||||||||||||
Sbjct: 203698 cgtggtccttccggcctccg 203679
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>gb|AC079096.4| Homo sapiens chromosome 18, clone RP11-75N4, complete sequence
          Length = 119927

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tccaggctctcctcttcttc 27
             ||||||||||||||||||||
Sbjct: 15663 tccaggctctcctcttcttc 15682
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>gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, complete sequence
          Length = 183066

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   tccaggctctcctcttcttc 27
           ||||||||||||||||||||
Sbjct: 884 tccaggctctcctcttcttc 865
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>gb|AC158388.2| Mus musculus BAC clone RP24-545I9 from chromosome 14, complete sequence
          Length = 183148

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     accaaagaggaagaaggttc 102
              ||||||||||||||||||||
Sbjct: 114582 accaaagaggaagaaggttc 114601
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 169      tcatctacttcaacatctac 188
                ||||||||||||||||||||
Sbjct: 28673507 tcatctacttcaacatctac 28673488
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>gb|AC105922.5| Homo sapiens BAC clone RP11-548K13 from 2, complete sequence
          Length = 115915

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    ccaaagaggaagaaggttct 103
             ||||||||||||||||||||
Sbjct: 26290 ccaaagaggaagaaggttct 26309
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>emb|BX934896.1| Gallus gallus finished cDNA, clone ChEST14c11
          Length = 1884

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  tcctcttcttcttcaaagaa 36
           ||||||||||||||||||||
Sbjct: 569 tcctcttcttcttcaaagaa 550
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>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0431H09
          Length = 166886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   tcatctacttcaacatctac 188
             ||||||||||||||||||||
Sbjct: 56581 tcatctacttcaacatctac 56562
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>dbj|AB020738.1| Tenebrio molitor mRNA for prophenoloxidase, complete cds
          Length = 2182

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 337 tcggcatgcgcaacgtggac 356
           ||||||||||||||||||||
Sbjct: 357 tcggcatgcgcaacgtggac 376
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>gb|U00017.1|U00017 Mycobacterium leprae cosmid B2126
          Length = 42157

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   cgtggtccttccggcctccg 165
             ||||||||||||||||||||
Sbjct: 32501 cgtggtccttccggcctccg 32520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,167,355
Number of Sequences: 3902068
Number of extensions: 4167355
Number of successful extensions: 101597
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101408
Number of HSP's gapped (non-prelim): 181
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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