ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ871387.1| Hordeum vulgare mRNA for BCL-2 binding anthanoge... 365 8e-98
2ref|NM_190444.1| Oryza sativa (japonica cultivar-group), predic... 125 1e-25
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
4dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
5dbj|AK070208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
6gb|BT009530.1| Triticum aestivum clone wr1.pk0122.e5:fis, full i... 74 4e-10
7ref|XM_463577.1| Oryza sativa (japonica cultivar-group), predic... 58 2e-05
8dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
9dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
10dbj|AK058550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
11gb|BT017955.1| Zea mays clone EL01N0522D10.c mRNA sequence 50 0.006
12ref|NM_185469.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.37
13dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
14gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.37
15dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
16dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
17dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.37
18gb|AE010362.1| Methanopyrus kandleri AV19 section 61 of 157 of t... 42 1.5
19ref|NM_189828.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
20dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
21dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
23dbj|AK065197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
24gb|AC152105.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A3, compl... 40 5.8
25ref|XM_483261.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
26ref|XM_472926.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
27gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.8
28gb|AC146938.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
29gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
30ref|XM_867230.1| PREDICTED: Bos taurus similar to membrane-assoc... 40 5.8
31ref|XM_567763.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 5.8
32emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
33emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
34emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
35gb|AE005751.1| Caulobacter crescentus CB15 section 77 of 359 of ... 40 5.8
36gb|AC092815.2| Homo sapiens chromosome 1 clone RP5-1029K14, comp... 40 5.8
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
38dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
41dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 5.8
42dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.8
43dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.8
44dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
45dbj|AP005254.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
46dbj|AK121996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
47dbj|AK105833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
48emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 5.8
49dbj|AK060485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
50gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.8
51gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8 
>emb|AJ871387.1| Hordeum vulgare mRNA for BCL-2 binding anthanogene-1 (bag1 gene)
          Length = 900

 Score =  365 bits (184), Expect = 8e-98
 Identities = 184/184 (100%)
 Strand = Plus / Plus

                                                                       
Query: 242 aggcccataaagaggaggacggcgatgggcggcggcaccagatcgggcgccagggaggcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggcccataaagaggaggacggcgatgggcggcggcaccagatcgggcgccagggaggcc 60

                                                                       
Query: 302 gagggcgagtgggaggtccggccgggcgggatgctcgtgcagcgcagggacggcgaggag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gagggcgagtgggaggtccggccgggcgggatgctcgtgcagcgcagggacggcgaggag 120

                                                                       
Query: 362 ggccccaccgtcaggctcagggtgtcccacggccccgtgctacgcgacgtcttcgtgccg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggccccaccgtcaggctcagggtgtcccacggccccgtgctacgcgacgtcttcgtgccg 180

               
Query: 422 ccgc 425
           ||||
Sbjct: 181 ccgc 184
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>ref|NM_190444.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 843

 Score =  125 bits (63), Expect = 1e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                       
Query: 280 cagatcgggcgccagggaggccgagggcgagtgggaggtccggccgggcgggatgctcgt 339
           |||||||||||  ||||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 21  cagatcgggcgggagggacgcggagggcgagtgggaggtccggcctggcgggatgctggt 80

                                                                  
Query: 340 gcagcgcagggacggcgaggagggccccaccgtcaggctcagggtgtcccacggc 394
           ||||||||||||||||||   ||| ||  |||||||||||||||| |||||||||
Sbjct: 81  gcagcgcagggacggcgacacgggtccggccgtcaggctcagggtctcccacggc 135
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 1e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                            
Query: 280      cagatcgggcgccagggaggccgagggcgagtgggaggtccggccgggcgggatgctcgt 339
                |||||||||||  ||||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 35575863 cagatcgggcgggagggacgcggagggcgagtgggaggtccggcctggcgggatgctggt 35575922

                                                                       
Query: 340      gcagcgcagggacggcgaggagggccccaccgtcaggctcagggtgtcccacggc 394
                ||||||||||||||||||   ||| ||  |||||||||||||||| |||||||||
Sbjct: 35575923 gcagcgcagggacggcgacacgggtccggccgtcaggctcagggtctcccacggc 35575977



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 307      cgagtgggaggtccggccgggcgggatgctcgtgcag 343
                |||||||||||| ||||||||||||||||| ||||||
Sbjct: 39477223 cgagtgggaggtgcggccgggcgggatgctggtgcag 39477259



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 122      gcctcccaccctccgcaaaagccccgcgccaccaa 156
                |||| ||||||| |||||||||| |||||||||||
Sbjct: 35575675 gccttccacccttcgcaaaagccacgcgccaccaa 35575709
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>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0446G04
          Length = 143515

 Score =  125 bits (63), Expect = 1e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                          
Query: 280    cagatcgggcgccagggaggccgagggcgagtgggaggtccggccgggcgggatgctcgt 339
              |||||||||||  ||||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 106050 cagatcgggcgggagggacgcggagggcgagtgggaggtccggcctggcgggatgctggt 106109

                                                                     
Query: 340    gcagcgcagggacggcgaggagggccccaccgtcaggctcagggtgtcccacggc 394
              ||||||||||||||||||   ||| ||  |||||||||||||||| |||||||||
Sbjct: 106110 gcagcgcagggacggcgacacgggtccggccgtcaggctcagggtctcccacggc 106164



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 122    gcctcccaccctccgcaaaagccccgcgccaccaa 156
              |||| ||||||| |||||||||| |||||||||||
Sbjct: 105862 gccttccacccttcgcaaaagccacgcgccaccaa 105896
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>dbj|AK070208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047C12, full
           insert sequence
          Length = 1160

 Score =  125 bits (63), Expect = 1e-25
 Identities = 102/115 (88%)
 Strand = Plus / Plus

                                                                       
Query: 280 cagatcgggcgccagggaggccgagggcgagtgggaggtccggccgggcgggatgctcgt 339
           |||||||||||  ||||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct: 327 cagatcgggcgggagggacgcggagggcgagtgggaggtccggcctggcgggatgctggt 386

                                                                  
Query: 340 gcagcgcagggacggcgaggagggccccaccgtcaggctcagggtgtcccacggc 394
           ||||||||||||||||||   ||| ||  |||||||||||||||| |||||||||
Sbjct: 387 gcagcgcagggacggcgacacgggtccggccgtcaggctcagggtctcccacggc 441



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 122 gcctcccaccctccgcaaaagccccgcgccaccaa 156
           |||| ||||||| |||||||||| |||||||||||
Sbjct: 139 gccttccacccttcgcaaaagccacgcgccaccaa 173
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>gb|BT009530.1| Triticum aestivum clone wr1.pk0122.e5:fis, full insert mRNA
           sequence
          Length = 789

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                            
Query: 373 caggctcagggtgtcccacggccccgtgctacgcgacgtcttcgtgccg 421
           ||||||||||||||||||||||||||  || ||||||||||||||||||
Sbjct: 8   caggctcagggtgtcccacggccccgccctgcgcgacgtcttcgtgccg 56
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>ref|XM_463577.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 519

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 307 cgagtgggaggtccggccgggcgggatgctcgtgcag 343
           |||||||||||| ||||||||||||||||| ||||||
Sbjct: 117 cgagtgggaggtgcggccgggcgggatgctggtgcag 153
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>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0497A05
          Length = 130919

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 307   cgagtgggaggtccggccgggcgggatgctcgtgcag 343
             |||||||||||| ||||||||||||||||| ||||||
Sbjct: 31665 cgagtgggaggtgcggccgggcgggatgctggtgcag 31701
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1417F08
          Length = 155536

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 307   cgagtgggaggtccggccgggcgggatgctcgtgcag 343
             |||||||||||| ||||||||||||||||| ||||||
Sbjct: 52237 cgagtgggaggtgcggccgggcgggatgctggtgcag 52273
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>dbj|AK058550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C08, full
           insert sequence
          Length = 1257

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 307 cgagtgggaggtccggccgggcgggatgctcgtgcag 343
           |||||||||||| ||||||||||||||||| ||||||
Sbjct: 533 cgagtgggaggtgcggccgggcgggatgctggtgcag 569
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>gb|BT017955.1| Zea mays clone EL01N0522D10.c mRNA sequence
          Length = 933

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 307 cgagtgggaggtccggccgggcgggatgctcgtgcag 343
           |||||||||||| ||||| ||||||||||| ||||||
Sbjct: 157 cgagtgggaggtgcggcccggcgggatgctggtgcag 193
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>ref|NM_185469.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1791

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 310 gtgggaggtccggccgggcgggatgctcgtgcag 343
           ||||||||| ||||| ||||||||||| ||||||
Sbjct: 420 gtgggaggtgcggccaggcgggatgctggtgcag 453
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 310     gtgggaggtccggccgggcgggatgctcgtgcag 343
               ||||||||| ||||| ||||||||||| ||||||
Sbjct: 1413640 gtgggaggtgcggccaggcgggatgctggtgcag 1413673
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 102     cgcgaccgcgggcgaggccggc 123
               ||||||||||||||||||||||
Sbjct: 2403068 cgcgaccgcgggcgaggccggc 2403089
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 310   gtgggaggtccggccgggcgggatgctcgtgcag 343
             ||||||||| ||||| ||||||||||| ||||||
Sbjct: 20926 gtgggaggtgcggccaggcgggatgctggtgcag 20959
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 310    gtgggaggtccggccgggcgggatgctcgtgcag 343
              ||||||||| ||||| ||||||||||| ||||||
Sbjct: 122179 gtgggaggtgcggccaggcgggatgctggtgcag 122212
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 103  gcgaccgcgggcgaggccggcc 124
            ||||||||||||||||||||||
Sbjct: 5179 gcgaccgcgggcgaggccggcc 5200
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>gb|AE010362.1| Methanopyrus kandleri AV19 section 61 of 157 of the complete genome
          Length = 11952

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 292  cagggaggccgagggcgagtg 312
            |||||||||||||||||||||
Sbjct: 2177 cagggaggccgagggcgagtg 2157
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>ref|NM_189828.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 612

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 36 agccaacccagcccaacccaa 56
          |||||||||||||||||||||
Sbjct: 72 agccaacccagcccaacccaa 92
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 36       agccaacccagcccaacccaa 56
                |||||||||||||||||||||
Sbjct: 25454599 agccaacccagcccaacccaa 25454619
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>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1056G08
          Length = 168173

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 36     agccaacccagcccaacccaa 56
              |||||||||||||||||||||
Sbjct: 147689 agccaacccagcccaacccaa 147709
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>dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0552F09
          Length = 134659

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 36    agccaacccagcccaacccaa 56
             |||||||||||||||||||||
Sbjct: 78316 agccaacccagcccaacccaa 78336
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>dbj|AK065197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E17, full
           insert sequence
          Length = 1791

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 310 gtgggaggtccggccgggcgggatgctcgtgca 342
           ||||||||| ||||| ||||||||||| |||||
Sbjct: 420 gtgggaggtgcggccaggcgggatgctggtgca 452
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>gb|AC152105.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A3, complete sequence
          Length = 40909

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   tccgccacgcgcgtcgcgtcgctt 196
             |||||| |||||||||||||||||
Sbjct: 26350 tccgccgcgcgcgtcgcgtcgctt 26373
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>ref|XM_483261.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 259 gacggcgatgggcggcggca 278
           ||||||||||||||||||||
Sbjct: 288 gacggcgatgggcggcggca 307
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>ref|XM_472926.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 504

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 308 gagtgggaggtccggccgggcgggatgctcgtgcag 343
           |||||||||||  ||||||| |||||||| ||||||
Sbjct: 139 gagtgggaggtgaggccgggagggatgctggtgcag 174
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>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete
              sequence
          Length = 1019846

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 241    gaggcccataaagaggaggacggcgatg 268
              |||||||||||||  |||||||||||||
Sbjct: 920811 gaggcccataaagctgaggacggcgatg 920784
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>gb|AC146938.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0062O09 map near S6115, complete sequence
          Length = 148654

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    caagccaacccagcccaacc 53
             ||||||||||||||||||||
Sbjct: 46500 caagccaacccagcccaacc 46519
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>gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0047D03, complete sequence
          Length = 126165

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   cgccacgcgcgtcgcgtcgc 194
             ||||||||||||||||||||
Sbjct: 17583 cgccacgcgcgtcgcgtcgc 17602
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>ref|XM_867230.1| PREDICTED: Bos taurus similar to membrane-associated RING-CH
           protein IX, transcript variant 2 (LOC540871), mRNA
          Length = 2932

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 254 aggaggacggcgatgggcggcggc 277
           ||||||||||||||||| ||||||
Sbjct: 67  aggaggacggcgatggggggcggc 90
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>ref|XM_567763.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNK03130) partial mRNA
          Length = 840

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 241 gaggcccataaagaggaggacggcgatg 268
           |||||||||||||  |||||||||||||
Sbjct: 265 gaggcccataaagctgaggacggcgatg 292
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>emb|AL606639.3|OSJN00072 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020J04,
            complete sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   caagccaacccagcccaacc 53
            ||||||||||||||||||||
Sbjct: 9442 caagccaacccagcccaacc 9423
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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
             complete sequence
          Length = 150864

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 308   gagtgggaggtccggccgggcgggatgctcgtgcag 343
             |||||||||||  ||||||| |||||||| ||||||
Sbjct: 10630 gagtgggaggtgaggccgggagggatgctggtgcag 10665
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>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
              complete sequence
          Length = 129498

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 308    gagtgggaggtccggccgggcgggatgctcgtgcag 343
              |||||||||||  ||||||| |||||||| ||||||
Sbjct: 118384 gagtgggaggtgaggccgggagggatgctggtgcag 118419
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>gb|AE005751.1| Caulobacter crescentus CB15 section 77 of 359 of the complete genome
          Length = 11570

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  caccagatcgggcgccaggg 296
            ||||||||||||||||||||
Sbjct: 4506 caccagatcgggcgccaggg 4525
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>gb|AC092815.2| Homo sapiens chromosome 1 clone RP5-1029K14, complete sequence
          Length = 126651

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    ggcgccagggaggccgaggg 306
              ||||||||||||||||||||
Sbjct: 101832 ggcgccagggaggccgaggg 101851
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       caagccaacccagcccaacc 53
                ||||||||||||||||||||
Sbjct: 28942784 caagccaacccagcccaacc 28942765



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 308      gagtgggaggtccggccgggcgggatgctcgtgcag 343
                |||||||||||  ||||||| |||||||| ||||||
Sbjct: 24121405 gagtgggaggtgaggccgggagggatgctggtgcag 24121440
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       caagccaacccagcccaacc 53
                ||||||||||||||||||||
Sbjct: 12593335 caagccaacccagcccaacc 12593316
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 308      gagtgggaggtccggccgggcgggatgctcgtgcag 343
                ||||||||||| ||||| || |||||||| ||||||
Sbjct: 20194766 gagtgggaggtgcggccaggtgggatgctggtgcag 20194731
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 259      gacggcgatgggcggcggca 278
                ||||||||||||||||||||
Sbjct: 25120324 gacggcgatgggcggcggca 25120343
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    gggacggcgaggagggcccc 367
              ||||||||||||||||||||
Sbjct: 295710 gggacggcgaggagggcccc 295729
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 104     cgaccgcgggcgaggccggc 123
               ||||||||||||||||||||
Sbjct: 6659403 cgaccgcgggcgaggccggc 6659422
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 194     ctttcgcctttctcgacgca 213
               ||||||||||||||||||||
Sbjct: 6298035 ctttcgcctttctcgacgca 6298054
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>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0047P18
          Length = 169128

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 308   gagtgggaggtccggccgggcgggatgctcgtgcag 343
             ||||||||||| ||||| || |||||||| ||||||
Sbjct: 88266 gagtgggaggtgcggccaggtgggatgctggtgcag 88231
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>dbj|AP005254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0064I19
          Length = 111644

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   gacggcgatgggcggcggca 278
             ||||||||||||||||||||
Sbjct: 24499 gacggcgatgggcggcggca 24518
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>dbj|AK121996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110C02, full
           insert sequence
          Length = 1768

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 308 gagtgggaggtccggccgggcgggatgctcgtgcag 343
           |||||||||||  ||||||| |||||||| ||||||
Sbjct: 237 gagtgggaggtgaggccgggagggatgctggtgcag 272
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>dbj|AK105833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E09, full
           insert sequence
          Length = 2079

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 308 gagtgggaggtccggccgggcgggatgctcgtgcag 343
           ||||||||||| ||||| || |||||||| ||||||
Sbjct: 753 gagtgggaggtgcggccaggtgggatgctggtgcag 788
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 96      ggaacccgcgaccgcgggcgaggc 119
               |||||||| |||||||||||||||
Sbjct: 1488924 ggaacccgtgaccgcgggcgaggc 1488901
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>dbj|AK060485.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D08, full
           insert sequence
          Length = 1811

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 308 gagtgggaggtccggccgggcgggatgctcgtgcag 343
           ||||||||||| ||||| || |||||||| ||||||
Sbjct: 485 gagtgggaggtgcggccaggtgggatgctggtgcag 520
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 318    tccggccgggcgggatgctcgtgc 341
              |||||||||||| |||||||||||
Sbjct: 623702 tccggccgggcgagatgctcgtgc 623725
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       caagccaacccagcccaacc 53
                ||||||||||||||||||||
Sbjct: 12672642 caagccaacccagcccaacc 12672623


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,658,913
Number of Sequences: 3902068
Number of extensions: 2658913
Number of successful extensions: 51117
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50068
Number of HSP's gapped (non-prelim): 1045
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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