>NIFU_RHOSH (Q01180) Nitrogen fixation protein nifU|
          Length = 246

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 313 ASVGGPPCFFPSCPALA-PWSSSRSFLPFHENRARLVPEPAPAAMSAGDALRM 158
           A+VGG P   P  PA A  WS+ +  L  +E R  + PEPAP    A   +R+
Sbjct: 92  AAVGGLPA--PRRPAAARAWSALQIALAAYEGRTFVAPEPAPVPAPAAAPVRL 142

>X_WHV7 (P12913) Trans-activating protein X|
          Length = 141

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 379 SNSGASRGGRNVGDFPLPG--CCSASVGGPPCFFPSCPALAPWSSSRSFLPFHENRARLV 206
           ++S +S    +  D PL     C AS  GP C   +C  L    S+ +F+ +H NR   +
Sbjct: 39  ASSASSPSPSDESDLPLGRLPACFASASGPCCLVFTCAELRTMDSTVNFVSWHANRQLGM 98

Query: 205 P 203
           P
Sbjct: 99  P 99

>RRS1_MOUSE (Q9CYH6) Ribosome biogenesis regulatory protein homolog|
          Length = 365

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 231 KGRKL--RDEDQGARAGQEGKKQGGPPTEAEQQP-GKGKSPTLRPPRLAPEFDGI 386
           K RK+  + + +G R G  GK++GGPP + E++  G G      P  LA +  G+
Sbjct: 302 KRRKMSQKGKRKGGRQGPSGKRKGGPPGQGEKRKGGLGSKKHSWPSALAGKKKGV 356

>X_WHV8 (P17401) Trans-activating protein X|
          Length = 141

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 379 SNSGASRGGRNVGDFPLPG--CCSASVGGPPCFFPSCPALAPWSSSRSFLPFHENRARLV 206
           ++S +S    +  D PL     C AS  GP C   +C  L    S+ +F+ +H NR   +
Sbjct: 39  ASSASSPSPSDESDLPLGRLPACFASASGPCCLVFTCADLRTMDSTVNFVSWHANRQLGM 98

Query: 205 P 203
           P
Sbjct: 99  P 99

>X_WHV1 (P03167) Trans-activating protein X|
          Length = 141

 Score = 32.0 bits (71), Expect = 0.80
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 379 SNSGASRGGRNVGDFPLPG--CCSASVGGPPCFFPSCPALAPWSSSRSFLPFHENRARLV 206
           ++  +S    +  D PL     C AS  GP C   +C  L    S+ +F+ +H NR   +
Sbjct: 39  ASPASSLSASDESDLPLGRLPACFASASGPCCLVVTCAELRTMDSTVNFVSWHANRQLGM 98

Query: 205 P 203
           P
Sbjct: 99  P 99

>SSPO_BOVIN (P98167) SCO-spondin (Fragment)|
          Length = 867

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
 Frame = -3

Query: 334 PLPG--CCSASVGGPPCFFPSCPALAPWSSSRSFLPF-------HENRARLVPEPAP 191
           PLPG  C    +   PCF  +CP    W+   ++ P        H +R R   +P P
Sbjct: 792 PLPGGSCPPDRLRSQPCFVQACPVAGAWAEWEAWGPCSVSCGGGHRSRRRSCMDPPP 848

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 261  GARAGQEGKKQGGPPTEAEQQPGKGKSPTLRPPRLAPEFDGID 389
            G+  G  G+  G  P E ++    GK   +RPP L   FD +D
Sbjct: 1303 GSSEGSSGRAAGDTP-ERKEVTSSGKKMKVRPPPLKKTFDSVD 1344

>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 261  GARAGQEGKKQGGPPTEAEQQPGKGKSPTLRPPRLAPEFDGID 389
            G+     G+  G  P E ++  G GK   +RPP L   FD +D
Sbjct: 1305 GSSESSSGRAAGDTP-ERKEAAGTGKKVKVRPPPLKKTFDSVD 1346

>RRS1_HUMAN (Q15050) Ribosome biogenesis regulatory protein homolog|
          Length = 365

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 231 KGRKL--RDEDQGARAGQEGKKQGGPPTE-AEQQPGKGKSPTLRPPRLAPEFDG 383
           K RK+  + + +G R G  GK++GGPP++  +++ G G      PP L  +  G
Sbjct: 302 KRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPGLGGKRKG 355

>X_WHV2 (P12937) Trans-activating protein X|
          Length = 141

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 379 SNSGASRGGRNVGDFPLPG--CCSASVGGPPCFFPSCPALAPWSSSRSFLPFHENRARLV 206
           ++S +S    +  D PL     C AS  GP C   +C  L    S+ +F+ +H NR   +
Sbjct: 39  ASSASSPSPSDDSDLPLGRLPACFASGSGPCCLVFTCADLRTMDSTVNFVSWHANRQLGM 98

Query: 205 P 203
           P
Sbjct: 99  P 99

>HEMH_MYCPA (Q740Y1) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 336

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -3

Query: 352 RNVGDFPLPGCCSASVGGPPCFFPSCPALA 263
           R  G  P+PGC  ASV G PC  P C A A
Sbjct: 306 RVTGPDPVPGCL-ASVNGAPCRPPHCAAQA 334

>Y054_NPVOP (O10312) Hypothetical 42.5 kDa protein (ORF58)|
          Length = 378

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
 Frame = -3

Query: 406 TMVSKQSIP----SNSGASRGGRNVGDFP----LPGCCSASVGGPPCFFPSCPALA---- 263
           T + KQS P     NS AS   R +G  P       CC  S GG P     CP  A    
Sbjct: 240 TTILKQSNPFIISENSSASVVLRTLGKCPDNPERVNCCKLSYGGAPPGHLMCPPRAIVKK 299

Query: 262 -----PWSSSRSFLPFHENR-ARLVPEPAPAAMSAG 173
                 W+S+    P  + R + L+  P+ AA  AG
Sbjct: 300 IYRYVNWASN----PHKDQRYSALIARPSDAATGAG 331

>X_HPBGS (P03168) Trans-activating protein X (B protein)|
          Length = 138

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -3

Query: 382 PSNSGASRGGRNVGDFP---LPGCCSASVGGPPCFFPSCPALAPWSSSRSFLPFHENR 218
           PS++ ++    +  D P   LP C  +S  GP C   +C  L    S+ +F+P+H  R
Sbjct: 38  PSSAASAFSSGHQADIPVGRLPACFYSSA-GPCCLGFTCADLRTMDSTVNFVPWHAKR 94

>ADA15_RAT (Q9QYV0) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 15) (Metalloproteinase-like,
           disintegrin-like, and cysteine-rich protein 15) (MDC-15)
           (Metalloprotease RGD disintegrin protein) (Metargidin)
           (CRII-7)
          Length = 816

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 267 RAGQEGK-KQGGPPTEAEQQPG-KGKSPTLRPPRLAP 371
           RA Q G  ++ GPP  A+Q PG K + PT  PP   P
Sbjct: 738 RAAQSGPPERPGPPQRAQQMPGTKPQGPTKPPPPRKP 774

>NKX23_HUMAN (Q8TAU0) Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3)|
           (Homeobox protein NK-2 homolog C)
          Length = 364

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 382 PSNSGASRGGRNVGDFPLPGCCSASVGGPPCFFPSCPALAPWSSSRSFLPFHENRA 215
           P+  G   GG +     +   CSA+ GGP   F +   L  + S  S  P H+  A
Sbjct: 296 PAGGGGGGGGTSAATTAMQPACSAAGGGP---FVNVSNLGGFGSGGSAQPLHQGTA 348

>HEMH_MYCLE (Q9CBM2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 336

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 343 GDFPLPGCCSASVGGPPCFFPSCPA 269
           G  P+PGC  AS+ G PC  P C A
Sbjct: 313 GSDPVPGCL-ASINGVPCDLPHCVA 336

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
 Frame = -3

Query: 328  PGCCSASVGGPPCFF----PSCPALAPWSSSRSFLPFHENRARLVPE-PAPAAMSAGDAL 164
            PG  +A V G P       P  P  A  S  R  LP+ E      P  P P +     AL
Sbjct: 1810 PGPSTAGVAGGPVAVEPEVPPVPLPAASSLPRKLLPWEEGPGPPPPPLPGPLSQPQASAL 1869

Query: 163  RMEKASTLSMLDAR 122
               KAS +S L ++
Sbjct: 1870 ATVKASIISELSSK 1883

>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -3

Query: 334  PLPGCCSASVGGPPCFFPSCPALAPWSSSRSFLPFHENRARLVPEPAPAAMSAGDALRME 155
            PLP   S +  GPP   P  P L P S+S++            P P   + +A  A + +
Sbjct: 2575 PLPQSTSKAASGPPPTLPPAPPL-PQSTSKAASGPPPTLPPAPPLPQSTSKAASGATQSD 2633

Query: 154  KASTLSM 134
               TL++
Sbjct: 2634 SGKTLTL 2640

>CTGE5_MOUSE (Q8R311) Cutaneous T-cell lymphoma-associated antigen 5 homolog|
           (cTAGE-5 protein) (Meningioma-expressed antigen 6)
          Length = 779

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -3

Query: 358 GGRNVGDFPLPGCCSASVGG--PPCFFPSCPALAPWSSSRSFLPFHENRARLVPEPAPAA 185
           G  NV D P+P  C A+  G  PP F P    L P      F+     R    P P P +
Sbjct: 647 GNSNVPDSPIPAECEAAGRGFFPPPFPPVRDPLFPVDPRSQFM----RRGPSFPPPPPGS 702

Query: 184 MSA 176
           + A
Sbjct: 703 IYA 705

>NO44_SOYBN (P04672) Nodulin 44 precursor (N-44) (Nodulin E27)|
          Length = 360

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +3

Query: 222 FSWKGRKLRDEDQGARAGQEGKK------QGGPPTEAEQQPGKGKSPTLRPPRLAP 371
           FS +GR+ + ++    AG  GK       + GPP +    PG    P  RPP + P
Sbjct: 123 FSPRGRRSKLDNHQTDAGTLGKVIPLPPIRPGPPLKIIPFPGTNIVPFPRPPNIVP 178

>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3703

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +3

Query: 231  KGRKLRDEDQGARAGQEGKKQGGPPT-----EAEQQPGKGKSPTLRPPRLAPEFDG 383
            + ++ RD  +G   G  G K+  P       + E  PG G  P++ PPR+A +  G
Sbjct: 1888 ESQRERDSAEGGE-GNTGPKETLPDALKAKEKKELAPGGGSEPSMLPPRIASDARG 1942

>Y630_PSEPK (Q88Q66) UPF0243 zinc-binding protein PP0630|
          Length = 66

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 283 PSCPALAPWSSSRSFLPFHENRARLVPEPAPAA 185
           P+C A   WS   +F PF  +R +L+   A AA
Sbjct: 10  PTCGAPVEWSEKNAFRPFCSDRCKLIDLGAWAA 42

>CASP2_HUMAN (P42575) Caspase-2 precursor (EC 3.4.22.-) (CASP-2) (ICH-1|
           protease) (ICH-1L/1S) [Contains: Caspase-2 subunit p18;
           Caspase-2 subunit p13; Caspase-2 subunit p12]
          Length = 452

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 249 DEDQGARAGQEGKKQGGPPTEAEQQPGKGKSPTLRPPRLAPEFDGIDCFE 398
           DE       Q+GK   G P   E   GK K P +R P  +    G  C +
Sbjct: 323 DETDRGVDQQDGKNHAGSPGCEESDAGKEKLPKMRLPTRSDMICGYACLK 372

>ADA2A_MOUSE (Q01338) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR)
          Length = 450

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 328 PGCCSASVGG----PPCFFPSCPALAPWSSSRSFLPFHENRARLVPEPAPAAMSAGDALR 161
           P  CSA  GG    P    P   A  P  +    LP   N A    EPAPA    GDAL 
Sbjct: 236 PDACSAPPGGADRRPNGLGPERGA-GPTGAEAEPLPTQLNGAP--GEPAPAGPRDGDALD 292

Query: 160 MEKAST 143
           +E++S+
Sbjct: 293 LEESSS 298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,268,778
Number of Sequences: 219361
Number of extensions: 833952
Number of successful extensions: 3712
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3702
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)