ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart60b09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038O15, full insert sequence Length = 1159 Score = 208 bits (105), Expect = 1e-50 Identities = 255/305 (83%) Strand = Plus / Plus Query: 134 gcccgccatgactgagtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaat 193 |||||||||||| ||||| |||||||||||||||||||||||||| ||||| || || || Sbjct: 120 gcccgccatgacggagtactgggtgagccaaggaaacaaatggtgtgacttctgtaagat 179 Query: 194 ctttatatctaacaatccgttcagcatcaggacacatgaactcggcaaacgccacaagga 253 | ||| |||| || ||| | |||||||| ||||||||| |||| || ||||||||||| Sbjct: 180 ttacatagctaataacccgctaagcatcagaacacatgaaatcggtaagcgccacaagga 239 Query: 254 caatgtcacccaaagattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagca 313 ||||||||| |||||||| | || ||||||||||| || ||||| || ||||||||||| Sbjct: 240 caatgtcactaaaagattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagca 299 Query: 314 gcagcaagcagctaaagccctccagctgatagaggctaaagctaaaaagagttaccaaaa 373 |||||||||||| |||||| ||| ||||| ||||||||||||||||| |||||||| Sbjct: 300 gcagcaagcagcccgggccctcaagcaaatagaagctaaagctaaaaagagctaccaaaa 359 Query: 374 agatttggagaataaccagagaaacaccgatggtgacagttctgcagcacctggagaagg 433 |||||| ||||| | || || || || ||||||| |||||| ||||||||||| || Sbjct: 360 agatttagagaacagtcaaaggaatgtggacggtgacacttctgcggcacctggagatgg 419 Query: 434 atggg 438 ||||| Sbjct: 420 atggg 424
>dbj|AK072439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111C14, full insert sequence Length = 2720 Score = 167 bits (84), Expect = 4e-38 Identities = 165/192 (85%) Strand = Plus / Plus Query: 134 gcccgccatgactgagtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaat 193 |||||||||||| ||||| |||||||||||||||||||||||||| ||||| || || || Sbjct: 109 gcccgccatgacggagtactgggtgagccaaggaaacaaatggtgtgacttctgtaagat 168 Query: 194 ctttatatctaacaatccgttcagcatcaggacacatgaactcggcaaacgccacaagga 253 | ||| |||| || ||| | |||||||| ||||||||| |||| || ||||||||||| Sbjct: 169 ttacatagctaataacccgctaagcatcagaacacatgaaatcggtaagcgccacaagga 228 Query: 254 caatgtcacccaaagattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagca 313 ||||||||| |||||||| | || ||||||||||| || ||||| || ||||||||||| Sbjct: 229 caatgtcactaaaagattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagca 288 Query: 314 gcagcaagcagc 325 |||||||||||| Sbjct: 289 gcagcaagcagc 300 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 351 aaagctaaaaagagttaccaaaaagatttggagaa 385 |||||||||||||| |||||||||||||| ||||| Sbjct: 570 aaagctaaaaagagctaccaaaaagatttagagaa 604
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 147 bits (74), Expect = 4e-32 Identities = 152/178 (85%) Strand = Plus / Minus Query: 148 agtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaatctttatatctaaca 207 |||| |||||||||||||||||||||||||| ||||| || || || | ||| |||| | Sbjct: 5870841 agtactgggtgagccaaggaaacaaatggtgtgacttctgtaagatttacatagctaata 5870782 Query: 208 atccgttcagcatcaggacacatgaactcggcaaacgccacaaggacaatgtcacccaaa 267 | ||| | |||||||| ||||||||| |||| || |||||||||||||||||||| ||| Sbjct: 5870781 acccgctaagcatcagaacacatgaaatcggtaagcgccacaaggacaatgtcactaaaa 5870722 Query: 268 gattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagcagcagcaagcagc 325 ||||| | || ||||||||||| || ||||| || ||||||||||||||||||||||| Sbjct: 5870721 gattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagcagcagcaagcagc 5870664 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 351 aaagctaaaaagagttaccaaaaagatttggagaa 385 |||||||||||||| |||||||||||||| ||||| Sbjct: 5870394 aaagctaaaaagagctaccaaaaagatttagagaa 5870360
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 147 bits (74), Expect = 4e-32 Identities = 152/178 (85%) Strand = Plus / Minus Query: 148 agtattgggtgagccaaggaaacaaatggtgcgacttgtgcaaaatctttatatctaaca 207 |||| |||||||||||||||||||||||||| ||||| || || || | ||| |||| | Sbjct: 71616 agtactgggtgagccaaggaaacaaatggtgtgacttctgtaagatttacatagctaata 71557 Query: 208 atccgttcagcatcaggacacatgaactcggcaaacgccacaaggacaatgtcacccaaa 267 | ||| | |||||||| ||||||||| |||| || |||||||||||||||||||| ||| Sbjct: 71556 acccgctaagcatcagaacacatgaaatcggtaagcgccacaaggacaatgtcactaaaa 71497 Query: 268 gattgtctacgatgcaaaaggatggcgctgctaaggaaaaggagcagcagcaagcagc 325 ||||| | || ||||||||||| || ||||| || ||||||||||||||||||||||| Sbjct: 71496 gattggcaaccatgcaaaaggagggtgctgccaaagaaaaggagcagcagcaagcagc 71439 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 351 aaagctaaaaagagttaccaaaaagatttggagaa 385 |||||||||||||| |||||||||||||| ||||| Sbjct: 71169 aaagctaaaaagagctaccaaaaagatttagagaa 71135
>ref|NM_103847.3| Arabidopsis thaliana nucleic acid binding / zinc ion binding AT1G49590 mRNA, complete cds Length = 1139 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 138 gccatgactgagtattgggtgagccaaggaaacaaatggtg 178 |||||||||||||||||||| || ||||| ||||||||||| Sbjct: 175 gccatgactgagtattgggtaagtcaagggaacaaatggtg 215
>emb|BX813576.1|CNS0ACD1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB25ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1330 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 138 gccatgactgagtattgggtgagccaaggaaacaaatggtg 178 |||||||||||||||||||| || ||||| ||||||||||| Sbjct: 114 gccatgactgagtattgggtaagtcaagggaacaaatggtg 154
>emb|BX813573.1|CNS0ACBW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB25ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1333 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 138 gccatgactgagtattgggtgagccaaggaaacaaatggtg 178 |||||||||||||||||||| || ||||| ||||||||||| Sbjct: 114 gccatgactgagtattgggtaagtcaagggaacaaatggtg 154
>gb|BT010196.1| Arabidopsis thaliana At1g49590 gene, complete cds Length = 729 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 141 atgactgagtattgggtgagccaaggaaacaaatggtg 178 ||||||||||||||||| || ||||| ||||||||||| Sbjct: 1 atgactgagtattgggtaagtcaagggaacaaatggtg 38
>emb|BX816601.1|CNS0ABK8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH58ZC06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1432 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 138 gccatgactgagtattgggtgagccaaggaaacaaatggtg 178 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 104 gccatgactgattattgggtaagtcaagggaacaaatggtg 144
>gb|U66590.1|HSU66590 Human ribosomal protein L5 pseudogene mRNA, partial cds Length = 910 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 cgcctccccctccccgaccgcc 30 |||||||||||||||||||||| Sbjct: 21 cgcctccccctccccgaccgcc 42
>ref|XM_419000.1| PREDICTED: Gallus gallus similar to myosin X (LOC420913), mRNA Length = 11199 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 411 agttctgcagcacctggagaa 431 ||||||||||||||||||||| Sbjct: 427 agttctgcagcacctggagaa 447
>gb|AC139376.3| Mus musculus BAC clone RP24-420A20 from chromosome 10, complete sequence Length = 184039 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 atttggagaataaccagagaa 396 ||||||||||||||||||||| Sbjct: 128396 atttggagaataaccagagaa 128376
>gb|AC099742.2| Papio anubis clone RP41-167P22, complete sequence Length = 171612 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 tgcaaaatctttatatctaacaatc 210 ||||||||||||| ||||||||||| Sbjct: 71795 tgcaaaatctttaaatctaacaatc 71771
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 gcctccccctccccgaccgcc 30 ||||||||||||||||||||| Sbjct: 65219 gcctccccctccccgaccgcc 65199
>emb|AL713920.14| Mouse DNA sequence from clone RP23-330B20 on chromosome X, complete sequence Length = 156186 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 gtgagccaaggaaacaaatgg 176 ||||||||||||||||||||| Sbjct: 137963 gtgagccaaggaaacaaatgg 137943
>gb|AC165247.2| Mus musculus BAC clone RP24-213G21 from chromosome 13, complete sequence Length = 162597 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 aaggaaaaggagcagcagca 319 |||||||||||||||||||| Sbjct: 25052 aaggaaaaggagcagcagca 25033
>ref|NM_001961.3| Homo sapiens eukaryotic translation elongation factor 2 (EEF2), mRNA Length = 3163 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 2916 cgcctccccctccccgaccg 2897
>ref|XM_976961.1| PREDICTED: Mus musculus similar to putative retrovirus-related gag protein (LOC669759), mRNA Length = 1047 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 aaggaaaaggagcagcagca 319 |||||||||||||||||||| Sbjct: 892 aaggaaaaggagcagcagca 911
>ref|XM_922665.2| PREDICTED: Mus musculus hypothetical LOC622110 (LOC622110), mRNA Length = 375 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 aaggaaaaggagcagcagca 319 |||||||||||||||||||| Sbjct: 277 aaggaaaaggagcagcagca 296
>emb|BX322542.23| Zebrafish DNA sequence from clone CH211-214I13 in linkage group 7, complete sequence Length = 59593 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 atttggagaataaccagaga 395 |||||||||||||||||||| Sbjct: 53482 atttggagaataaccagaga 53463
>emb|AL607077.4| Human DNA sequence from clone RP11-374I15 on chromosome 6 Contains a pseudogene similar to part of acalsia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A) (AAAS), complete sequence Length = 175466 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 agttaccaaaaagatttgga 382 |||||||||||||||||||| Sbjct: 19445 agttaccaaaaagatttgga 19426
>emb|AL445183.19| Human DNA sequence from clone RP11-334A14 on chromosome 1 Contains the 5' end of the SCP2 gene for sterol carrier protein 2, a pseudogene similar to part of related RAS viral (r-ras) oncogene homolog 2 (RRAS2), a beta polypeptide tubulin family pseudogene, the PODN gene for podocan, a likely ortholog of mouse hypoxia induced gene 1 (HIG1) pseudogene, two novel genes, the SLC1A7 gene for solute carrier family 1 (glutamate transporter) member 7 and a CpG island, complete sequence Length = 193774 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 aaggaaaaggagcagcagca 319 |||||||||||||||||||| Sbjct: 114582 aaggaaaaggagcagcagca 114601
>ref|XM_499880.1| Yarrowia lipolytica CLIB122, YALI0A08580g predicted mRNA Length = 1035 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 aaggaaaaggagcagcagca 319 |||||||||||||||||||| Sbjct: 919 aaggaaaaggagcagcagca 938
>emb|AL137784.14| Human DNA sequence from clone RP1-199J3 on chromosome 6 Contains the 5' end of the USP45 gene for ubiquitin specific protease 45, a novel gene, the CCNC gene for cyclin C, a 40S ribosomal protein RPS3 pseudogene, the 5' end of the PRDM13 gene for PR-domain zinc-finger protein 13 and 5 CpG islands, complete sequence Length = 127413 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 ttaccaaaaagatttggagaataa 388 |||||||||| ||||||||||||| Sbjct: 112715 ttaccaaaaatatttggagaataa 112692
>emb|Z11692.1|HSEF2MR H.sapiens mRNA for elongation factor 2 Length = 3080 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 2833 cgcctccccctccccgaccg 2814
>emb|X51466.1|HSEF2 Human mRNA for elongation factor 2 Length = 3075 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 2833 cgcctccccctccccgaccg 2814
>gb|AC160102.6| Mus musculus chromosome 1, clone RP23-246K5, complete sequence Length = 171111 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ggacaatgtcacccaaagat 270 |||||||||||||||||||| Sbjct: 95363 ggacaatgtcacccaaagat 95344
>gb|AC011488.7| Homo sapiens chromosome 19 clone CTB-171N13, complete sequence Length = 134308 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 125869 cgcctccccctccccgaccg 125888
>emb|CR616093.1| full-length cDNA clone CS0DF036YA20 of Fetal brain of Homo sapiens (human) Length = 930 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 688 cgcctccccctccccgaccg 669
>emb|CR608809.1| full-length cDNA clone CS0CAP008YN19 of Thymus of Homo sapiens (human) Length = 1337 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 1121 cgcctccccctccccgaccg 1102
>emb|CR602709.1| full-length cDNA clone CS0DG006YD23 of B cells (Ramos cell line) of Homo sapiens (human) Length = 471 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 229 cgcctccccctccccgaccg 210
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 caaaaagatttggagaataa 388 |||||||||||||||||||| Sbjct: 1832728 caaaaagatttggagaataa 1832709
>gb|BC024689.1| Homo sapiens, Similar to Elongation factor 2b, clone IMAGE:4153410, mRNA, partial cds Length = 2071 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 1811 cgcctccccctccccgaccg 1792
>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence Length = 163823 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 aaaaagatttggagaataac 389 |||||||||||||||||||| Sbjct: 8052 aaaaagatttggagaataac 8071
>gb|AC009239.3|AC009239 Homo sapiens BAC clone RP11-470K20 from Y, complete sequence Length = 136371 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 accaaaaagatttggagaat 386 |||||||||||||||||||| Sbjct: 10640 accaaaaagatttggagaat 10659
>gb|AC114558.18| Mus musculus chromosome 8, clone RP23-47G19, complete sequence Length = 262311 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 aggaaaaggagcagcagcaagcag 324 |||||||| ||||||||||||||| Sbjct: 26843 aggaaaagaagcagcagcaagcag 26820
>dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7 Length = 83948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 caaaaagatttggagaataa 388 |||||||||||||||||||| Sbjct: 54623 caaaaagatttggagaataa 54604
>gb|AC154040.7| Mus musculus 10 BAC RP23-348E15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210862 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 aaaggagcagcagcaagcag 324 |||||||||||||||||||| Sbjct: 111541 aaaggagcagcagcaagcag 111560
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 aaggaaaaggagcagcagca 319 |||||||||||||||||||| Sbjct: 852256 aaggaaaaggagcagcagca 852275
>gb|AC102277.8| Mus musculus chromosome 1, clone RP24-297D13, complete sequence Length = 143532 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ggacaatgtcacccaaagat 270 |||||||||||||||||||| Sbjct: 107646 ggacaatgtcacccaaagat 107665
>emb|AL163171.4|CNS01RIF Human chromosome 14 DNA sequence BAC R-406A9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 148578 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aaaaagagttaccaaaaaga 376 |||||||||||||||||||| Sbjct: 103981 aaaaagagttaccaaaaaga 103962
>emb|AL355095.4|CNS05TCE Human chromosome 14 DNA sequence BAC R-11K13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 153099 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aaaaagagttaccaaaaaga 376 |||||||||||||||||||| Sbjct: 21489 aaaaagagttaccaaaaaga 21470
>gb|M19997.1|HUMEF2A Human elongation factor 2 (EF-2) mRNA, 3' end Length = 1573 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 1335 cgcctccccctccccgaccg 1316
>gb|AC016586.9| Homo sapiens chromosome 19 clone CTD-2622I13, complete sequence Length = 205642 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 cgcctccccctccccgaccg 28 |||||||||||||||||||| Sbjct: 1330 cgcctccccctccccgaccg 1349
>dbj|D83489.2| Tokudaia osimensis ZFX gene, partial cds Length = 4465 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 tctttatatctaacaatccgttca 216 ||||||||||||| |||||||||| Sbjct: 3571 tctttatatctaagaatccgttca 3594 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,226,143 Number of Sequences: 3902068 Number of extensions: 4226143 Number of successful extensions: 87673 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87503 Number of HSP's gapped (non-prelim): 165 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
