ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60b04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472739.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 172 bits (87), Expect = 7e-40 Identities = 273/335 (81%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccgacgcgaggaagatggtcggcgtgtacgagctcaagagaggc 197 ||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || || Sbjct: 61 gcgctcgccggcggcgccggtgcgaggaagacggtcggcgagtacgtgctcaggaagggg 120 Query: 198 gatttctccgtcaagatgaccaactggggcgccaccatcatgtccatcctcgtccctgat 257 || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct: 121 gacttctccgtgaagatcaccaactggggagcaaccatgatgtcggtcgtcctccctgat 180 Query: 258 tccaaagggaatttggccgatgttgtgctgggcatggacaccctcgctgaatatgttaat 317 ||||||||||||||||| ||||||||||| ||| | |||||| | ||||| || || || Sbjct: 181 tccaaagggaatttggctgatgttgtgcttggcctagacaccattgctgagtacgtgaac 240 Query: 318 gacacctcttactttgggccgctgaatgggagggtggcgcagaggatggccaggggccgc 377 ||||| |||||| |||||| | | || |||| | ||||||||| |||||||| || Sbjct: 241 gacactaattacttcgggccggttaccggacgggtcgggcagaggatagccagggggcgg 300 Query: 378 ttcgtcctcgacggcaaagtataccatacctacctcaacgacggcaagaacgcaattcat 437 ||||| |||||||| || || || || || ||| |||||||||||| |||||| ||||| Sbjct: 301 ttcgttctcgacgggaaggtgtatcacacgtacatcaacgacggcaggaacgcgattcac 360 Query: 438 ggtggcaaaagggggttcagcaaggtgatatggac 472 ||||| | || ||||||||||| || |||||||| Sbjct: 361 ggtggacacagagggttcagcaaagtcatatggac 395
>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence Length = 1343 Score = 131 bits (66), Expect = 2e-27 Identities = 138/162 (85%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccgacgcgaggaagatggtcggcgtgtacgagctcaagagaggc 197 ||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || || Sbjct: 124 gcgctcgccggcggcgccggtgcgaggaagacggtcggcgagtacgtgctcaggaagggg 183 Query: 198 gatttctccgtcaagatgaccaactggggcgccaccatcatgtccatcctcgtccctgat 257 || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct: 184 gacttctccgtgaagatcaccaactggggagcaaccatgatgtcggtcgtcctccctgat 243 Query: 258 tccaaagggaatttggccgatgttgtgctgggcatggacacc 299 ||||||||||||||||| ||||||||||| ||| | |||||| Sbjct: 244 tccaaagggaatttggctgatgttgtgcttggcctagacacc 285 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 356 gcagaggatggccaggggccgcttcgtcctcgacggcaaagtataccatacctacctcaa 415 ||||||||| |||||||| || ||||| |||||||| || || || || || ||| |||| Sbjct: 339 gcagaggatagccagggggcggttcgttctcgacgggaaggtgtatcacacgtacatcaa 398 Query: 416 cgacggcaagaacgcaattcatggtggcaaaagggggttcagcaaggtgatatggac 472 |||||||| |||||| ||||| ||||| | || ||||||||||| || |||||||| Sbjct: 399 cgacggcaggaacgcgattcacggtggacacagagggttcagcaaagtcatatggac 455
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccgacgcgaggaagatggtcggcgtgtacgagctcaagagaggc 197 ||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || || Sbjct: 86131 gcgctcgccggcggcgccggtgcgaggaagacggtcggcgagtacgtgctcaggaagggg 86190 Query: 198 gatttctccgtcaagatgaccaactggggcgccaccatcatgtccatcctcgtccctgat 257 || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct: 86191 gacttctccgtgaagatcaccaactggggagcaaccatgatgtcggtcgtcctccctgat 86250 Query: 258 tccaaagg 265 |||||||| Sbjct: 86251 tccaaagg 86258 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 356 gcagaggatggccaggggccgcttcgtcctcgacggcaaagtataccatacctacctcaa 415 ||||||||| |||||||| || ||||| |||||||| || || || || || ||| |||| Sbjct: 87873 gcagaggatagccagggggcggttcgttctcgacgggaaggtgtatcacacgtacatcaa 87932 Query: 416 cgacggcaagaacgcaattca 436 |||||||| |||||| ||||| Sbjct: 87933 cgacggcaggaacgcgattca 87953 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 263 agggaatttggccgatgttgtgctgggcatggacacc 299 |||||||||||| ||||||||||| ||| | |||||| Sbjct: 86351 agggaatttggctgatgttgtgcttggcctagacacc 86387
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccgacgcgaggaagatggtcggcgtgtacgagctcaagagaggc 197 ||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || || Sbjct: 22877356 gcgctcgccggcggcgccggtgcgaggaagacggtcggcgagtacgtgctcaggaagggg 22877415 Query: 198 gatttctccgtcaagatgaccaactggggcgccaccatcatgtccatcctcgtccctgat 257 || |||||||| ||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct: 22877416 gacttctccgtgaagatcaccaactggggagcaaccatgatgtcggtcgtcctccctgat 22877475 Query: 258 tccaaagg 265 |||||||| Sbjct: 22877476 tccaaagg 22877483 Score = 58.0 bits (29), Expect = 3e-05 Identities = 68/81 (83%) Strand = Plus / Plus Query: 356 gcagaggatggccaggggccgcttcgtcctcgacggcaaagtataccatacctacctcaa 415 ||||||||| |||||||| || ||||| |||||||| || || || || || ||| |||| Sbjct: 22879098 gcagaggatagccagggggcggttcgttctcgacgggaaggtgtatcacacgtacatcaa 22879157 Query: 416 cgacggcaagaacgcaattca 436 |||||||| |||||| ||||| Sbjct: 22879158 cgacggcaggaacgcgattca 22879178 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 263 agggaatttggccgatgttgtgctgggcatggacacc 299 |||||||||||| ||||||||||| ||| | |||||| Sbjct: 22877576 agggaatttggctgatgttgtgcttggcctagacacc 22877612
>gb|BT016428.1| Zea mays clone Contig261 mRNA sequence Length = 1373 Score = 85.7 bits (43), Expect = 1e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 160 cgaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgacca 219 |||||||||| |||||||| ||||||||| | || ||||||||||||||| | |||| Sbjct: 91 cgaggaagatagtcggcgttcacgagctcagggtgggggatttctccgtcaaggtcacca 150 Query: 220 actggggcgccaccatcatgtccatcctcgtccctgattccaaagggaatttggccgatg 279 ||||||| || || |||||||| || || |||| || ||||||||||| |||| ||| | Sbjct: 151 actggggggcgactctcatgtccgtcatcctccccgactccaaagggaacttgggcgacg 210 Query: 280 ttgtgctgggcatggacaccctcgctgaata 310 ||||||| ||| |||||| |||||||||| Sbjct: 211 ttgtgctcggctacgacaccgtcgctgaata 241
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 144 gccggcggcgccgacgcgaggaagatggtcggcgtgtacg 183 |||||||||||||| |||||||||| |||||||| ||||| Sbjct: 10046095 gccggcggcgccgatgcgaggaagacggtcggcgagtacg 10046056
>dbj|AP006050.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021H05 Length = 159111 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 144 gccggcggcgccgacgcgaggaagatggtcggcgtgtacg 183 |||||||||||||| |||||||||| |||||||| ||||| Sbjct: 119660 gccggcggcgccgatgcgaggaagacggtcggcgagtacg 119621
>dbj|AP004791.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0491D10 Length = 162039 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 144 gccggcggcgccgacgcgaggaagatggtcggcgtgtacg 183 |||||||||||||| |||||||||| |||||||| ||||| Sbjct: 12461 gccggcggcgccgatgcgaggaagacggtcggcgagtacg 12422
>ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1299 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 128 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 187 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 188 ctggggagctactatcatgtc 208
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 22122008 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 22122067 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 22122068 ctggggagctactatcatgtc 22122088
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 95907 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 95966 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 95967 ctggggagctactatcatgtc 95987
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 17852 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 17911 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 17912 ctggggagctactatcatgtc 17932
>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence Length = 1324 Score = 50.1 bits (25), Expect = 0.007 Identities = 67/81 (82%) Strand = Plus / Plus Query: 161 gaggaagatggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaa 220 |||||||||||| || ||||| ||||| |||| || ||||||||| ||| | | ||||| Sbjct: 128 gaggaagatggttggggtgtatgagctgaagaagggggatttctccatcagggtcaccaa 187 Query: 221 ctggggcgccaccatcatgtc 241 |||||| || || |||||||| Sbjct: 188 ctggggagctactatcatgtc 208
>ref|XM_507177.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0070J06.25 mRNA Length = 2298 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 100 ggccggcggcgccgacgggaggaag 124
>ref|XM_480935.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2298 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 100 ggccggcggcgccgacgggaggaag 124
>ref|XM_470761.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1375 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 216 accaactggggcgccaccatc 236
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 14940399 accaactggggcgccaccatc 14940379
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 102363 accaactggggcgccaccatc 102383
>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12 Length = 340900 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 126 ctcgcggcccttgcgctggccggcg 150 ||||||||||||||||||| ||||| Sbjct: 183722 ctcgcggcccttgcgctggtcggcg 183698
>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16 Length = 349497 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 cgcggcccttgcgctggccggcggc 152 ||||||||| ||||||||||||||| Sbjct: 108397 cgcggccctcgcgctggccggcggc 108373
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 8754158 ggccggcggcgccgacgggaggaag 8754182
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 14934933 accaactggggcgccaccatc 14934913
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0437G01 Length = 147101 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 31907 ggccggcggcgccgacgggaggaag 31931
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0070J06 Length = 142303 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 97137 ggccggcggcgccgacgggaggaag 97161
>dbj|AK099083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A08, full insert sequence Length = 2298 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 100 ggccggcggcgccgacgggaggaag 124
>dbj|AK069332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L17, full insert sequence Length = 1375 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 accaactggggcgccaccatc 236 ||||||||||||||||||||| Sbjct: 216 accaactggggcgccaccatc 236
>dbj|AK068915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001C12, full insert sequence Length = 2298 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 ggccggcggcgccgacgcgaggaag 167 ||||||||||||||||| ||||||| Sbjct: 100 ggccggcggcgccgacgggaggaag 124
>gb|AY110655.1| Zea mays CL9117_1 mRNA sequence Length = 1124 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 ccaactggggcgccaccatca 237 ||||||||||||||||||||| Sbjct: 1077 ccaactggggcgccaccatca 1057
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gccgacgcgaggaagatggtcggcg 177 |||||||||| |||||||||||||| Sbjct: 345057 gccgacgcgatgaagatggtcggcg 345033
>ref|XM_472738.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1206 Score = 40.1 bits (20), Expect = 6.4 Identities = 116/148 (78%) Strand = Plus / Plus Query: 170 ggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaactggggcgc 229 ||||||||| || ||||||| || || ||||||||| ||| | | ||||| ||||| || Sbjct: 102 ggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattggggagc 161 Query: 230 caccatcatgtccatcctcgtccctgattccaaagggaatttggccgatgttgtgctggg 289 |||||||||| || | | ||||| |||| |||||| |||| ||||||||| || || Sbjct: 162 ggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttcttgg 221 Query: 290 catggacaccctcgctgaatatgttaat 317 |||||| | ||||||||||||||| Sbjct: 222 atatgacaccattgctgaatatgttaat 249
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 1786890 ccaaagggaatttggccgat 1786909
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ctcgtccctgattccaaagg 265 |||||||||||||||||||| Sbjct: 3234770 ctcgtccctgattccaaagg 3234789
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ctcgtccctgattccaaagg 265 |||||||||||||||||||| Sbjct: 746390 ctcgtccctgattccaaagg 746371
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ttgcgctggccggcggcgccgacg 159 |||||||||||||||||| ||||| Sbjct: 1534305 ttgcgctggccggcggcgacgacg 1534282
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 4119755 gcgctggccggcggcgccga 4119774
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 125363 gcgctggccggcggcgccga 125382
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 243221 gcgctggccggcggcgccga 243202
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 61855 gcgctggccggcggcgccga 61874
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 42110 gcgctggccggcggcgccga 42091
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 127473 gcgctggccggcggcgccga 127492
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 120206 gcgctggccggcggcgccga 120187
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gcctcgcggcccttgcgctg 143 |||||||||||||||||||| Sbjct: 138197 gcctcgcggcccttgcgctg 138178
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ctcgtccctgattccaaagg 265 |||||||||||||||||||| Sbjct: 555035 ctcgtccctgattccaaagg 555016
>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14, complete sequence Length = 189425 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 ggcaaaagggggttcagcaa 460 |||||||||||||||||||| Sbjct: 167926 ggcaaaagggggttcagcaa 167907
>gb|AF118548.1| Brucella melitensis biovar Abortus insertion sequence IS2020 putative transposase (tpnA), transposon Tn2020 hypothetical proteins, and insertion sequence IS2020 putative transposase (tnpA) genes, complete cds; and truncated IS2020-like sequence tIS2020A, complete sequence Length = 6002 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 5327 ccaaagggaatttggccgat 5346
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tggccggcggcgccgacgcg 161 |||||||||||||||||||| Sbjct: 4117767 tggccggcggcgccgacgcg 4117786
>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8, complete sequence Length = 168607 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 ggcaaaagggggttcagcaa 460 |||||||||||||||||||| Sbjct: 134778 ggcaaaagggggttcagcaa 134759
>gb|AF326688.1|AF326688 Burkholderia pseudomallei RNA polymerase sigma-32 factor (rpoD) gene, complete cds; and cytochrome D ubiquinol oxidase subunit I gene, partial cds Length = 2682 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ctcgtccctgattccaaagg 265 |||||||||||||||||||| Sbjct: 508 ctcgtccctgattccaaagg 527
>gb|AE009463.1| Brucella melitensis 16M chromosome I, section 20 of 195 of the complete sequence Length = 12889 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 2360 ccaaagggaatttggccgat 2341
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 1803750 ccaaagggaatttggccgat 1803769
>dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H06, full insert sequence Length = 1285 Score = 40.1 bits (20), Expect = 6.4 Identities = 116/148 (78%) Strand = Plus / Plus Query: 170 ggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaactggggcgc 229 ||||||||| || ||||||| || || ||||||||| ||| | | ||||| ||||| || Sbjct: 131 ggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattggggagc 190 Query: 230 caccatcatgtccatcctcgtccctgattccaaagggaatttggccgatgttgtgctggg 289 |||||||||| || | | ||||| |||| |||||| |||| ||||||||| || || Sbjct: 191 ggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttcttgg 250 Query: 290 catggacaccctcgctgaatatgttaat 317 |||||| | ||||||||||||||| Sbjct: 251 atatgacaccattgctgaatatgttaat 278
>dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full insert sequence Length = 1329 Score = 40.1 bits (20), Expect = 6.4 Identities = 116/148 (78%) Strand = Plus / Plus Query: 170 ggtcggcgtgtacgagctcaagagaggcgatttctccgtcaagatgaccaactggggcgc 229 ||||||||| || ||||||| || || ||||||||| ||| | | ||||| ||||| || Sbjct: 155 ggtcggcgtctatgagctcaggaagggagatttctccatcagggtcaccaattggggagc 214 Query: 230 caccatcatgtccatcctcgtccctgattccaaagggaatttggccgatgttgtgctggg 289 |||||||||| || | | ||||| |||| |||||| |||| ||||||||| || || Sbjct: 215 ggtcatcatgtccgtcgtgcttcctgactccagagggaaattggacgatgttgttcttgg 274 Query: 290 catggacaccctcgctgaatatgttaat 317 |||||| | ||||||||||||||| Sbjct: 275 atatgacaccattgctgaatatgttaat 302
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gcgctggccggcggcgccga 157 |||||||||||||||||||| Sbjct: 2271619 gcgctggccggcggcgccga 2271638
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 cctcgcggcccttgcgctgg 144 |||||||||||||||||||| Sbjct: 3009495 cctcgcggcccttgcgctgg 3009514
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccaaagggaatttggccgat 278 |||||||||||||||||||| Sbjct: 1800878 ccaaagggaatttggccgat 1800897
>emb|AL591952.9| Mouse DNA sequence from clone RP23-25N17 on chromosome 15, complete sequence Length = 208835 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 aggatggccaggggccgctt 379 |||||||||||||||||||| Sbjct: 118582 aggatggccaggggccgctt 118563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,521,991 Number of Sequences: 3902068 Number of extensions: 3521991 Number of successful extensions: 71709 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 70620 Number of HSP's gapped (non-prelim): 1091 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
