ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60a12 |
|---|---|
| Clone Library Name | barley_pub |
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 34.7 bits (78), Expect = 0.094 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Frame = -1 Query: 270 LGCFIESDACISKSY----CRSSMDMSRTREQRETTALTMGERPATDVLLQAEGER*GSS 103 LG DAC+S S S +D S E A +G++P T++ S Sbjct: 1182 LGKLTTGDACVSTSCELASALSHLDASHLTENLPKAASELGQQPMTELDSS-------SD 1234 Query: 102 LSSTPRRGPAPLKDPSRTSPSKPSISR 22 L S+P + A DPS+TS +SR Sbjct: 1235 LISSPGKKGAAHPDPSKTSVDTGQVSR 1261
>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) (Verprolin homology domain-containing protein 3) Length = 502 Score = 32.7 bits (73), Expect = 0.36 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = -1 Query: 111 GSSLSSTPRRGPAPLKDPSRTSPSKPSISRSR 16 GSSLSS+P GP P+ + R P++P IS +R Sbjct: 411 GSSLSSSPMHGP-PVAEAKRQEPAQPPISDAR 441
>DXR_STRAW (Q82K41) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 394 Score = 32.0 bits (71), Expect = 0.61 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Frame = +2 Query: 77 GPRRGVDDNEDPYRSPSACKSTSVAGLSPMVSA-VVSRCSRVLDISIEDLQYDFDMQASD 253 GP RG E SP + + P+++ + ++ L++ L YD + + Sbjct: 176 GPFRGRTKAELANVSPEHALAHPTWAMGPVITINSATLVNKGLEVIEAHLLYDIPFERIE 235 Query: 254 SIKHPRNYARNFLEYCCFRALAQVSP 331 + HP++Y + +E+ LAQ +P Sbjct: 236 VVVHPQSYVHSMVEFTDGSTLAQATP 261
>AROC_PSEPK (Q88LU7) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 363 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +2 Query: 161 PMVSAVVSRCSRVLDISIEDLQYDFDMQASDSIKH 265 P + A+V C L+IS+ DLQ+D D + + +H Sbjct: 21 PALVAIVDGCPPGLEISLADLQHDLDRRKPGTSRH 55
>IF2_BDEBA (Q6MMS6) Translation initiation factor IF-2| Length = 975 Score = 30.4 bits (67), Expect = 1.8 Identities = 21/59 (35%), Positives = 31/59 (52%) Frame = -1 Query: 213 MDMSRTREQRETTALTMGERPATDVLLQAEGER*GSSLSSTPRRGPAPLKDPSRTSPSK 37 MD+SR + Q GERPA +A GE+ G+S S T +R P P+ +P++ Sbjct: 233 MDLSRVQSQAPQRP--QGERPAGGFTPRAGGEQRGASASFTGQR-PGGFNRPAGGAPTR 288
>ANLN_XENLA (Q801E2) Actin-binding protein anillin| Length = 1116 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/62 (29%), Positives = 26/62 (41%) Frame = -1 Query: 207 MSRTREQRETTALTMGERPATDVLLQAEGER*GSSLSSTPRRGPAPLKDPSRTSPSKPSI 28 + RTR +RE M +RP A +R L + PAP ++ +S PS Sbjct: 9 LERTRARRENLQKKMADRPTAGTRTAALNKRPREPLLEANHQPPAPAEEAKPSSKPSPSK 68 Query: 27 SR 22 R Sbjct: 69 RR 70
>CENG3_MOUSE (Q8VHH5) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 3) (AGAP-3) (MR1-interacting protein) (MRIP-1) (CRAM-associated GTPase) (CRAG) Length = 910 Score = 30.0 bits (66), Expect = 2.3 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 201 RTREQRETTALTM----GERPATDVLLQAEGER*GSSLSSTPRRGPAPLKDPSRTSPSKP 34 R+R+ R T L G + D+L+Q G L+ TP R PA +PS P Sbjct: 848 RSRDARGLTPLAYARRAGSQECADILIQHGCPGEGCGLAPTPNREPANGTNPSAELHRSP 907 Query: 33 SI 28 SI Sbjct: 908 SI 909
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 29.6 bits (65), Expect = 3.0 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -1 Query: 219 SSMDMSRTREQRETTALTMGERPATDVLLQAEGER*-GSSLSSTPRRGPAPLKDPSRTSP 43 +S DMS +R + R + +G R G S P R P+P + P +P Sbjct: 2 ASADMSPSRSHPHDATRSPSPRTQSPSPRDEDGSRSPGERTPSPPSRDPSPYRSPGERTP 61 Query: 42 SKPSISRSRVL 10 S PS R R L Sbjct: 62 S-PSPRRDRSL 71
>CENG3_HUMAN (Q96P47) Centaurin-gamma 3 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 3) (AGAP-3) (MR1-interacting protein) (MRIP-1) (CRAM-associated GTPase) (CRAG) Length = 875 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -1 Query: 201 RTREQRETTALTM----GERPATDVLLQAEGER*GSSLSSTPRRGPAPLKDPSRTSPSKP 34 R+R+ R T L G + D+L+Q G L+ TP R PA +PS P Sbjct: 813 RSRDARGLTPLAYARRAGSQECADILIQHGCPGEGCGLAPTPNREPANGTNPSAELHRSP 872 Query: 33 SI 28 S+ Sbjct: 873 SL 874
>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = -1 Query: 135 LQAEGER*GSSLSSTPRRGPAPLKDPSRTS--PSKPSISRSRV 13 LQ EG+ ++ + RR P+P PS S P P + R RV Sbjct: 222 LQGEGQAGSAAPAPKGRRSPSPGSSPSGRSGKPESPGVRRKRV 264
>HAIR_RAT (P97609) Protein hairless| Length = 1181 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 416 WLKKRKLPKLTSYQMSGDEGFYQQDIPQLVRPVQVP 309 W+ PK+ S G +GFY +D P ++RP + P Sbjct: 186 WVYSGSQPKVPSAFSLGSKGFYHKD-PNILRPAKEP 220
>ANLN_MOUSE (Q8K298) Actin-binding protein anillin| Length = 1121 Score = 28.9 bits (63), Expect = 5.1 Identities = 22/64 (34%), Positives = 27/64 (42%) Frame = -1 Query: 207 MSRTREQRETTALTMGERPATDVLLQAEGER*GSSLSSTPRRGPAPLKDPSRTSPSKPSI 28 + RTR +RE M ERP T V A + G S PL S +KPS Sbjct: 9 LERTRARRENLQRKMAERP-TAVARSAPHAKRGREPLSEASNQQQPLPGGEEKSCTKPSP 67 Query: 27 SRSR 16 S+ R Sbjct: 68 SKKR 71
>ANLN_HUMAN (Q9NQW6) Actin-binding protein anillin| Length = 1124 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/64 (31%), Positives = 26/64 (40%) Frame = -1 Query: 207 MSRTREQRETTALTMGERPATDVLLQAEGER*GSSLSSTPRRGPAPLKDPSRTSPSKPSI 28 + RTR +RE M ERP +R LS + PL S +KPS Sbjct: 9 LERTRARRENLQRKMAERPTAAPRSMTHAKRARQPLSEASNQ--QPLSGGEEKSCTKPSP 66 Query: 27 SRSR 16 S+ R Sbjct: 67 SKKR 70
>HEM1_MYCTU (P64328) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 468 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = -1 Query: 231 SYCRSSMDMSRTREQRETTALTMGERPATDVLLQAEGER*GSSLSSTPRRGPA 73 SY + ++ + T GE P AE R G + S+P+R P+ Sbjct: 415 SYAEALRELFELDQTAVDAVATAGELPVVPSGFDAESRRGGGDMQSSPKRSPS 467
>HEM1_MYCBO (P64329) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 468 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/53 (26%), Positives = 22/53 (41%) Frame = -1 Query: 231 SYCRSSMDMSRTREQRETTALTMGERPATDVLLQAEGER*GSSLSSTPRRGPA 73 SY + ++ + T GE P AE R G + S+P+R P+ Sbjct: 415 SYAEALRELFELDQTAVDAVATAGELPVVPSGFDAESRRGGGDMQSSPKRSPS 467
>OCLN_POTTR (Q28793) Occludin| Length = 489 Score = 28.1 bits (61), Expect = 8.8 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Frame = -1 Query: 189 QRETTALTMGERPA---TDVLLQAEGER*GSSLSSTPR----RGPAPLKDPSRTSPSKPS 31 Q ET L E+P T L A+ G S S+P GP+P ++ + S S+P Sbjct: 286 QDETATLAYSEKPISPLTSAFLPAQENGYGHSTPSSPSVPPPEGPSPPEEKDKGSVSRPP 345 Query: 30 ISR 22 R Sbjct: 346 ARR 348
>MA2B1_FELCA (O46432) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1007 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -1 Query: 108 SSLSSTPRRGPAPLKDPSRTSPS 40 S L TP GP PL PSR P+ Sbjct: 963 SRLKWTPNTGPTPLPSPSRLDPA 985
>HAIR_MOUSE (Q61645) Protein hairless| Length = 1182 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 416 WLKKRKLPKLTSYQMSGDEGFYQQDIPQLVRPVQVP 309 W+ PK+ S G +GFY +D P ++RP + P Sbjct: 186 WVYSGSQPKVPSAFGLGSKGFYHKD-PNILRPAKEP 220
>HGFA_CANFA (Q6QNF4) Hepatocyte growth factor activator precursor (EC 3.4.21.-)| (HGF activator) (HGFA) [Contains: Hepatocyte growth factor activator short chain; Hepatocyte growth factor activator long chain] Length = 654 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -1 Query: 264 CFIESDACISKSYCRSSMDMSRTREQRETTALTMGERPATDVLLQAEGER 115 C++ D+ +S YCR + S R TTA+ + + V Q G+R Sbjct: 347 CYVVKDSALSWEYCRLAACESLARIPSLTTAVLLSQAEPAPVGRQTCGKR 396
>STAU1_HUMAN (O95793) Double-stranded RNA-binding protein Staufen homolog 1| Length = 577 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +2 Query: 71 GAGPRRGVDDNEDPYRSPSACKSTSVAGLSPMVSAV 178 G+G G + ED +R P AG+ PMV V Sbjct: 389 GSGDENGTSNKEDEFRMPYLSHQQLPAGILPMVPEV 424
>GNAT1_MOUSE (P20612) Guanine nucleotide-binding protein G(t), alpha-1 subunit| (Transducin alpha-1 chain) Length = 349 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 392 KLTSYQMSGDEGFYQQDIPQLVRPVQVP*SSNIPKS 285 + + YQ++ G+Y D+ +LV P VP ++ +S Sbjct: 137 RASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRS 172
>GNAT1_HUMAN (P11488) Guanine nucleotide-binding protein G(t), alpha-1 subunit| (Transducin alpha-1 chain) Length = 349 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 392 KLTSYQMSGDEGFYQQDIPQLVRPVQVP*SSNIPKS 285 + + YQ++ G+Y D+ +LV P VP ++ +S Sbjct: 137 RASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRS 172
>GNAT1_CANFA (Q28300) Guanine nucleotide-binding protein G(t), alpha-1 subunit| (Transducin alpha-1 chain) Length = 349 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 392 KLTSYQMSGDEGFYQQDIPQLVRPVQVP*SSNIPKS 285 + + YQ++ G+Y D+ +LV P VP ++ +S Sbjct: 137 RASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRS 172
>GNAT1_BOVIN (P04695) Guanine nucleotide-binding protein G(t), alpha-1 subunit| (Transducin alpha-1 chain) Length = 349 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 392 KLTSYQMSGDEGFYQQDIPQLVRPVQVP*SSNIPKS 285 + + YQ++ G+Y D+ +LV P VP ++ +S Sbjct: 137 RASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRS 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,577,313 Number of Sequences: 219361 Number of extensions: 820940 Number of successful extensions: 2953 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2837 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2952 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
