ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112 mRNA Length = 1006 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 |||||||| || ||||| || || ||||||||||||||| |||| ||||||||||||| Sbjct: 186 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 243 Score = 54.0 bits (27), Expect = 1e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||||| |||| |||| || |||||||||||| |||| |||||||||||||| Sbjct: 324 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 382 Score = 42.1 bits (21), Expect = 0.55 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccga 49 |||| |||||||||||||||||||| Sbjct: 361 tcgtgccggagctgccaaagcccga 385 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 60 caccccgtcatgcccgagctgccaaagcctga 91 ||||||||| |||| ||| ||||||||||||| Sbjct: 558 caccccgtcgtgccggagttgccaaagcctga 589 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 ccgcaccccgtcatgcccgagctgccaaagcc 88 |||||||||||| |||| |||||||| ||||| Sbjct: 474 ccgcaccccgtcgtgccggagctgccgaagcc 505 Score = 38.2 bits (19), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 117 gtgccacaccctgtgatgccgga 139 ||||||||||||||| ||||||| Sbjct: 591 gtgccacaccctgtggtgccgga 613
>ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1005 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 |||||||| || ||||| || || ||||||||||||||| |||| ||||||||||||| Sbjct: 183 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 240 Score = 54.0 bits (27), Expect = 1e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||||| |||| |||| || |||||||||||| |||| |||||||||||||| Sbjct: 321 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 379 Score = 42.1 bits (21), Expect = 0.55 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccga 49 |||| |||||||||||||||||||| Sbjct: 358 tcgtgccggagctgccaaagcccga 382 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 60 caccccgtcatgcccgagctgccaaagcctga 91 ||||||||| |||| ||| ||||||||||||| Sbjct: 555 caccccgtcgtgccggagttgccaaagcctga 586 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 ccgcaccccgtcatgcccgagctgccaaagcc 88 |||||||||||| |||| |||||||| ||||| Sbjct: 471 ccgcaccccgtcgtgccggagctgccgaagcc 502 Score = 38.2 bits (19), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 117 gtgccacaccctgtgatgccgga 139 ||||||||||||||| ||||||| Sbjct: 588 gtgccacaccctgtggtgccgga 610
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 |||||||| || ||||| || || ||||||||||||||| |||| ||||||||||||| Sbjct: 24417350 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 24417293 Score = 56.0 bits (28), Expect = 4e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 29 cccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||| || |||||||| || |||||||||| || | |||| |||||||||||||| Sbjct: 24428166 cccggagcttccgaagcccgagctgccgccgcacctcgccgtgccggagctgccaaagcc 24428107 Score = 56.0 bits (28), Expect = 4e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 25 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 84 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| | Sbjct: 24419311 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 24419252 Query: 85 agcctgaa 92 |||||||| Sbjct: 24419251 agcctgaa 24419244 Score = 54.0 bits (27), Expect = 1e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||||| |||| |||| || |||||||||||| |||| |||||||||||||| Sbjct: 24417212 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 24417154 Score = 46.1 bits (23), Expect = 0.035 Identities = 32/35 (91%) Strand = Plus / Minus Query: 54 ccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||| ||||||||| |||| |||||||||||||| Sbjct: 24419447 ccgccacaccccgtcgtgccggagctgccaaagcc 24419413 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 24419348 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 24419291 Score = 42.1 bits (21), Expect = 0.55 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 tcgtcccggagctgccaaagcccga 49 |||| |||||||||||||||||||| Sbjct: 24417175 tcgtgccggagctgccaaagcccga 24417151 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccga 49 |||||||||||||||||||| Sbjct: 24428123 ccggagctgccaaagcccga 24428104 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ccgcaccccgtcatgcccgagctgccaaagcc 88 |||||||||||| |||| |||||||| ||||| Sbjct: 24417062 ccgcaccccgtcgtgccggagctgccgaagcc 24417031 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 60 caccccgtcatgcccgagctgccaaagcctga 91 ||||||||| |||| ||| ||||||||||||| Sbjct: 24416978 caccccgtcgtgccggagttgccaaagcctga 24416947 Score = 38.2 bits (19), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 117 gtgccacaccctgtgatgccgga 139 ||||||||||||||| ||||||| Sbjct: 24416945 gtgccacaccctgtggtgccgga 24416923 Score = 38.2 bits (19), Expect = 8.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgc 60 |||||||| ||||||||||| || ||||||| Sbjct: 24413578 ccggagcttccaaagcccgagctgccgccgc 24413548 Score = 38.2 bits (19), Expect = 8.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 56 gccgcaccccgtcatgcccgagctgcc 82 ||||||||||||| |||| |||||||| Sbjct: 24413429 gccgcaccccgtcgtgccggagctgcc 24413403
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 |||||||| || ||||| || || ||||||||||||||| |||| ||||||||||||| Sbjct: 43217 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 43160 Score = 56.0 bits (28), Expect = 4e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 29 cccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||| || |||||||| || |||||||||| || | |||| |||||||||||||| Sbjct: 54033 cccggagcttccgaagcccgagctgccgccgcacctcgccgtgccggagctgccaaagcc 53974 Score = 56.0 bits (28), Expect = 4e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 25 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 84 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| | Sbjct: 45178 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 45119 Query: 85 agcctgaa 92 |||||||| Sbjct: 45118 agcctgaa 45111 Score = 54.0 bits (27), Expect = 1e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||||| |||| |||| || |||||||||||| |||| |||||||||||||| Sbjct: 43079 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 43021 Score = 46.1 bits (23), Expect = 0.035 Identities = 32/35 (91%) Strand = Plus / Minus Query: 54 ccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||| ||||||||| |||| |||||||||||||| Sbjct: 45314 ccgccacaccccgtcgtgccggagctgccaaagcc 45280 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 45215 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 45158 Score = 42.1 bits (21), Expect = 0.55 Identities = 24/25 (96%) Strand = Plus / Minus Query: 25 tcgtcccggagctgccaaagcccga 49 |||| |||||||||||||||||||| Sbjct: 43042 tcgtgccggagctgccaaagcccga 43018 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccga 49 |||||||||||||||||||| Sbjct: 53990 ccggagctgccaaagcccga 53971 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ccgcaccccgtcatgcccgagctgccaaagcc 88 |||||||||||| |||| |||||||| ||||| Sbjct: 42929 ccgcaccccgtcgtgccggagctgccgaagcc 42898 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 60 caccccgtcatgcccgagctgccaaagcctga 91 ||||||||| |||| ||| ||||||||||||| Sbjct: 42845 caccccgtcgtgccggagttgccaaagcctga 42814 Score = 38.2 bits (19), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 117 gtgccacaccctgtgatgccgga 139 ||||||||||||||| ||||||| Sbjct: 42812 gtgccacaccctgtggtgccgga 42790 Score = 38.2 bits (19), Expect = 8.6 Identities = 28/31 (90%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgc 60 |||||||| ||||||||||| || ||||||| Sbjct: 39445 ccggagcttccaaagcccgagctgccgccgc 39415 Score = 38.2 bits (19), Expect = 8.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 56 gccgcaccccgtcatgcccgagctgcc 82 ||||||||||||| |||| |||||||| Sbjct: 39296 gccgcaccccgtcgtgccggagctgcc 39270
>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full insert sequence Length = 1005 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 |||||||| || ||||| || || ||||||||||||||| |||| ||||||||||||| Sbjct: 183 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 240 Score = 54.0 bits (27), Expect = 1e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||||| |||| |||| || |||||||||||| |||| |||||||||||||| Sbjct: 321 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 379 Score = 42.1 bits (21), Expect = 0.55 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccga 49 |||| |||||||||||||||||||| Sbjct: 358 tcgtgccggagctgccaaagcccga 382 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 60 caccccgtcatgcccgagctgccaaagcctga 91 ||||||||| |||| ||| ||||||||||||| Sbjct: 555 caccccgtcgtgccggagttgccaaagcctga 586 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 ccgcaccccgtcatgcccgagctgccaaagcc 88 |||||||||||| |||| |||||||| ||||| Sbjct: 471 ccgcaccccgtcgtgccggagctgccgaagcc 502 Score = 38.2 bits (19), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 117 gtgccacaccctgtgatgccgga 139 ||||||||||||||| ||||||| Sbjct: 588 gtgccacaccctgtggtgccgga 610
>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full insert sequence Length = 1006 Score = 60.0 bits (30), Expect = 2e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 |||||||| || ||||| || || ||||||||||||||| |||| ||||||||||||| Sbjct: 186 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 243 Score = 54.0 bits (27), Expect = 1e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||||| |||| |||| || |||||||||||| |||| |||||||||||||| Sbjct: 324 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagcc 382 Score = 42.1 bits (21), Expect = 0.55 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccga 49 |||| |||||||||||||||||||| Sbjct: 361 tcgtgccggagctgccaaagcccga 385 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 60 caccccgtcatgcccgagctgccaaagcctga 91 ||||||||| |||| ||| ||||||||||||| Sbjct: 558 caccccgtcgtgccggagttgccaaagcctga 589 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 ccgcaccccgtcatgcccgagctgccaaagcc 88 |||||||||||| |||| |||||||| ||||| Sbjct: 474 ccgcaccccgtcgtgccggagctgccgaagcc 505 Score = 38.2 bits (19), Expect = 8.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 117 gtgccacaccctgtgatgccgga 139 ||||||||||||||| ||||||| Sbjct: 591 gtgccacaccctgtggtgccgga 613
>gb|AY112347.1| Zea mays CL32321_1 mRNA sequence Length = 636 Score = 60.0 bits (30), Expect = 2e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcct 89 ||||||||||| ||||||||||| || || ||||| ||| |||| ||||| ||||||||| Sbjct: 434 ccggagctgcccaagcccgaactgcctcctcacccggtcgtgccagagcttccaaagcct 375 Query: 90 ga 91 || Sbjct: 374 ga 373 Score = 42.1 bits (21), Expect = 0.55 Identities = 24/25 (96%) Strand = Plus / Minus Query: 75 gagctgccaaagcctgaactacctc 99 |||||||||||||||||||| |||| Sbjct: 350 gagctgccaaagcctgaactccctc 326 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 33 gagctgccaaagcccgaactcccgccgcaccc 64 |||||||||||||| |||||||| || ||||| Sbjct: 350 gagctgccaaagcctgaactccctcctcaccc 319 Score = 38.2 bits (19), Expect = 8.6 Identities = 31/35 (88%) Strand = Plus / Minus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccc 64 ||||||||||| |||||||| || | ||||||||| Sbjct: 596 ccggagctgcccaagcccgagctgcagccgcaccc 562
>ref|XM_479036.1| Oryza sativa (japonica cultivar-group), mRNA Length = 678 Score = 56.0 bits (28), Expect = 4e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 29 cccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||| || |||||||| || |||||||||| || | |||| |||||||||||||| Sbjct: 192 cccggagcttccgaagcccgagctgccgccgcacctcgccgtgccggagctgccaaagcc 251 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccga 49 |||||||||||||||||||| Sbjct: 235 ccggagctgccaaagcccga 254
>ref|XM_479032.1| Oryza sativa (japonica cultivar-group), mRNA Length = 994 Score = 56.0 bits (28), Expect = 4e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 84 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| | Sbjct: 690 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 749 Query: 85 agcctgaa 92 |||||||| Sbjct: 750 agcctgaa 757 Score = 46.1 bits (23), Expect = 0.035 Identities = 32/35 (91%) Strand = Plus / Plus Query: 54 ccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||| ||||||||| |||| |||||||||||||| Sbjct: 554 ccgccacaccccgtcgtgccggagctgccaaagcc 588 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 653 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 710
>ref|XM_507388.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113 mRNA Length = 1071 Score = 56.0 bits (28), Expect = 4e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 84 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| | Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748 Query: 85 agcctgaa 92 |||||||| Sbjct: 749 agcctgaa 756 Score = 46.1 bits (23), Expect = 0.035 Identities = 32/35 (91%) Strand = Plus / Plus Query: 54 ccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||| ||||||||| |||| |||||||||||||| Sbjct: 553 ccgccacaccccgtcgtgccggagctgccaaagcc 587 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
>ref|XM_506448.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113 mRNA Length = 1071 Score = 56.0 bits (28), Expect = 4e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 84 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| | Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748 Query: 85 agcctgaa 92 |||||||| Sbjct: 749 agcctgaa 756 Score = 46.1 bits (23), Expect = 0.035 Identities = 32/35 (91%) Strand = Plus / Plus Query: 54 ccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||| ||||||||| |||| |||||||||||||| Sbjct: 553 ccgccacaccccgtcgtgccggagctgccaaagcc 587 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
>dbj|AK106214.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G11, full insert sequence Length = 1071 Score = 56.0 bits (28), Expect = 4e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 84 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| | Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748 Query: 85 agcctgaa 92 |||||||| Sbjct: 749 agcctgaa 756 Score = 46.1 bits (23), Expect = 0.035 Identities = 32/35 (91%) Strand = Plus / Plus Query: 54 ccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||| ||||||||| |||| |||||||||||||| Sbjct: 553 ccgccacaccccgtcgtgccggagctgccaaagcc 587 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
>dbj|AK105918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H12, full insert sequence Length = 1071 Score = 56.0 bits (28), Expect = 4e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 84 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| | Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748 Query: 85 agcctgaa 92 |||||||| Sbjct: 749 agcctgaa 756 Score = 46.1 bits (23), Expect = 0.035 Identities = 32/35 (91%) Strand = Plus / Plus Query: 54 ccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||| ||||||||| |||| |||||||||||||| Sbjct: 553 ccgccacaccccgtcgtgccggagctgccaaagcc 587 Score = 44.1 bits (22), Expect = 0.14 Identities = 49/58 (84%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagc 87 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
>dbj|AK070771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L14, full insert sequence Length = 988 Score = 56.0 bits (28), Expect = 4e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 25 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaa 84 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||| | Sbjct: 684 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 743 Query: 85 agcctgaa 92 |||||||| Sbjct: 744 agcctgaa 751 Score = 46.1 bits (23), Expect = 0.035 Identities = 32/35 (91%) Strand = Plus / Plus Query: 54 ccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||| ||||||||| |||| |||||||||||||| Sbjct: 549 ccgccacaccccgtcgtgccggagctgccaaagcc 583
>dbj|AK062673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G06, full insert sequence Length = 678 Score = 56.0 bits (28), Expect = 4e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 29 cccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccaaagcc 88 ||||||||| || |||||||| || |||||||||| || | |||| |||||||||||||| Sbjct: 192 cccggagcttccgaagcccgagctgccgccgcacctcgccgtgccggagctgccaaagcc 251 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccga 49 |||||||||||||||||||| Sbjct: 235 ccggagctgccaaagcccga 254
>ref|XM_479030.1| Oryza sativa (japonica cultivar-group), mRNA Length = 680 Score = 38.2 bits (19), Expect = 8.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 56 gccgcaccccgtcatgcccgagctgcc 82 ||||||||||||| |||| |||||||| Sbjct: 377 gccgcaccccgtcgtgccggagctgcc 403 Score = 38.2 bits (19), Expect = 8.6 Identities = 28/31 (90%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgc 60 |||||||| ||||||||||| || ||||||| Sbjct: 228 ccggagcttccaaagcccgagctgccgccgc 258
>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence Length = 190553 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 117 gtgccacaccctgtgatgc 135 ||||||||||||||||||| Sbjct: 137722 gtgccacaccctgtgatgc 137704
>emb|AL021939.1|HS352A20 Human DNA sequence from clone RP3-352A20 on chromosome 6q24.1-25.1 Contains a novel pseudogene and the 3' end of the ALDH8A1 gene for aldehyde dehydrogenase 8 family, member A1, complete sequence Length = 144759 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 cctctcgtgcccgaagtgc 120 ||||||||||||||||||| Sbjct: 113585 cctctcgtgcccgaagtgc 113603
>emb|X61391.1|ZMFERRI1 Maize mRNA for ferritin (clone FM1) Length = 1292 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 155 cgaagtgccacaccccgtg 173 ||||||||||||||||||| Sbjct: 829 cgaagtgccacaccccgtg 811
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 tcccggagctgccaaagcc 46 ||||||||||||||||||| Sbjct: 2737640 tcccggagctgccaaagcc 2737658
>gb|AC093600.3| Homo sapiens BAC clone RP11-333E5 from 4, complete sequence Length = 165536 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 aagcctgaactacctcacc 102 ||||||||||||||||||| Sbjct: 130683 aagcctgaactacctcacc 130665
>gb|AC074047.6|AC074047 Mus musculus 7 BAC RP23-377F9 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 150351 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 117 gtgccacaccctgtgatgc 135 ||||||||||||||||||| Sbjct: 44153 gtgccacaccctgtgatgc 44135
>dbj|AK107490.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D01, full insert sequence Length = 680 Score = 38.2 bits (19), Expect = 8.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 56 gccgcaccccgtcatgcccgagctgcc 82 ||||||||||||| |||| |||||||| Sbjct: 377 gccgcaccccgtcgtgccggagctgcc 403 Score = 38.2 bits (19), Expect = 8.6 Identities = 28/31 (90%) Strand = Plus / Plus Query: 30 ccggagctgccaaagcccgaactcccgccgc 60 |||||||| ||||||||||| || ||||||| Sbjct: 228 ccggagcttccaaagcccgagctgccgccgc 258
>gb|AY106851.1| Zea mays PCO065378 mRNA sequence Length = 1308 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 155 cgaagtgccacaccccgtg 173 ||||||||||||||||||| Sbjct: 840 cgaagtgccacaccccgtg 822
>dbj|AB053170.3| Homo sapiens genomic DNA, chromosome 4p15.3, BAC clone:395N09, containing QDPR gene for dihydropteridine reductase, complete cds Length = 128800 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 aagcctgaactacctcacc 102 ||||||||||||||||||| Sbjct: 49376 aagcctgaactacctcacc 49394
>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete sequence Length = 228603 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 cgtcccggagctgccaaag 44 ||||||||||||||||||| Sbjct: 31426 cgtcccggagctgccaaag 31408 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 824,817 Number of Sequences: 3902068 Number of extensions: 824817 Number of successful extensions: 54765 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54541 Number of HSP's gapped (non-prelim): 208 length of query: 175 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 153 effective length of database: 17,147,199,772 effective search space: 2623521565116 effective search space used: 2623521565116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
