ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60a08 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 114 bits (285), Expect = 1e-25 Identities = 55/89 (61%), Positives = 69/89 (77%), Gaps = 1/89 (1%) Frame = +3 Query: 120 GQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVIAGTSTGALVASM 296 G+++TVLSIDGGGI+G+IP+TIL LE +LQE+D DAR+ADYFDVI GTSTG L+ +M Sbjct: 26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAM 85 Query: 297 LAAPGENKRPLFQAKDINKFYLDNGPKIF 383 + P E RP AKDI FY ++GPKIF Sbjct: 86 ITTPNETNRPFAAAKDIVPFYFEHGPKIF 114
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 113 bits (283), Expect = 2e-25 Identities = 58/101 (57%), Positives = 73/101 (72%), Gaps = 1/101 (0%) Frame = +3 Query: 84 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 260 A T TC + G+++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCA--TLGEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 261 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIF 383 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF 114
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 110 bits (274), Expect = 2e-24 Identities = 57/101 (56%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Frame = +3 Query: 84 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 260 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 7 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 64 Query: 261 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIF 383 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF Sbjct: 65 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF 105
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 110 bits (274), Expect = 2e-24 Identities = 57/101 (56%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Frame = +3 Query: 84 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 260 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 261 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIF 383 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF 114
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 110 bits (274), Expect = 2e-24 Identities = 57/101 (56%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Frame = +3 Query: 84 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 260 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 261 AGTSTGALVASMLAAPGENKRPLFQAKDINKFYLDNGPKIF 383 GTSTG L+ +M+ P EN RP AKDI FY ++GP IF Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF 114
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 38.1 bits (87), Expect = 0.010 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +3 Query: 135 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 290 +L +DGGG++GLI +L +E D FD +AGTSTG ++A Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 525
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 37.7 bits (86), Expect = 0.013 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 135 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 290 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 470
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 37.7 bits (86), Expect = 0.013 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 135 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 290 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 471
>YLBK_BACSU (O34731) Hypothetical UPF0028 protein ylbK| Length = 260 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/56 (37%), Positives = 28/56 (50%) Frame = +3 Query: 138 LSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVASMLAA 305 L++ GG RGL +L+ L E+D +IAG+S GALV S AA Sbjct: 8 LALGSGGARGLAHLGVLSSLHKHQIEVD-----------MIAGSSMGALVGSFYAA 52
>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding protein) (IL4-BP)] Length = 825 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -2 Query: 434 GAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGLEERPLVLAG 306 G ++ P WG+E P L E P + D L E PLV+AG Sbjct: 452 GPKEAPPWGKEQPLHL-EPSPPASPTQSPDNLTCTETPLVIAG 493
>Y924_EHRRG (Q5FGP9) UPF0054 protein ERGA_CDS_09240| Length = 157 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -2 Query: 440 VHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGL 333 +HG + D+ E P L +Y+ +E+KL+D LG+ Sbjct: 112 IHGLLHILDYNHEEP--LMQYIMESIEIKLLDKLGI 145
>Y882_EHRRW (Q5HA01) UPF0054 protein Erum8820/ERWE_CDS_09330| Length = 157 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -2 Query: 440 VHGAEQVPDWGQESPAPLWEYLGPVVEVKLVDVLGL 333 +HG + D+ E P L +Y+ +E+KL+D LG+ Sbjct: 112 IHGLLHILDYNHEEP--LMQYIMESIEIKLLDKLGI 145
>VG75_ICHV1 (Q00129) Hypothetical gene 75 protein| Length = 423 Score = 29.6 bits (65), Expect = 3.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 66 MCSHGHAPTCVTCPPPSQGQLITV 137 +CSHG +C+T PP QG T+ Sbjct: 139 LCSHGVTASCITMGPPVQGMPETI 162
>ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 437 Score = 29.6 bits (65), Expect = 3.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 109 GGQVTHVGAWPWLHMVSLAPSHCS 38 GGQ + GAWPW+ + + SH S Sbjct: 45 GGQTSSPGAWPWMVSLQIFTSHNS 68
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -3 Query: 340 LAWKSGRLFSPGAASMDATSAPVLVPAITSK*SAMRASGPSSSWSLDSRQ 191 L W RL P AS T P P+ S + + + GPS WSL R+ Sbjct: 1487 LQWPPPRLPGPPPASPAPTEGPR--PSRPSGPALLNSEGPSGKWSLGGRK 1534
>COAD_BDEBA (Q6MQ60) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)| (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) Length = 160 Score = 28.9 bits (63), Expect = 5.9 Identities = 8/26 (30%), Positives = 21/26 (80%) Frame = +3 Query: 138 LSIDGGGIRGLIPSTILACLESKLQE 215 ++I+GG ++GL+P ++ +E+K+++ Sbjct: 135 VAINGGALKGLVPDVVVEAMENKIRK 160
>YQHO_BACSU (P54513) Hypothetical protein yqhO| Length = 291 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +3 Query: 150 GGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVASMLAAPGENKRPL 329 GGG++G+ + LE K F +AGTS GA++A+ +A+ Sbjct: 9 GGGVKGIALAGAYEVLEEK-----------GFRFKRVAGTSAGAIIAAFIASG------- 50 Query: 330 FQAKDINKFYLD-NGPKIFPQR 392 + +K+I+ + +G K+ QR Sbjct: 51 YTSKEIHALIEEVDGEKLLDQR 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,486,440 Number of Sequences: 219361 Number of extensions: 941154 Number of successful extensions: 3636 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3529 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3627 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
