ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 62 5e-10
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 61 1e-09
3PARC_HUMAN (Q8IWT3) p53-associated parkin-like cytoplasmic prote... 30 3.6
4FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes: [A... 30 3.6
5BGBP1_DROME (Q9NHB0) Gram-negative bacteria-binding protein 1 pr... 28 8.1

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 32/47 (68%), Positives = 35/47 (74%)
 Frame = +3

Query: 309 IFNFGDSNSDTGGMAAASGLNIALPEGRTYFRRPTGRLSDGRLVIDF 449
           IFNFGDSNSDTGG AAA    +  P G T+F R TGR SDGRL+IDF
Sbjct: 35  IFNFGDSNSDTGGKAAAF-YPLNPPYGETFFHRSTGRYSDGRLIIDF 80



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/47 (63%), Positives = 34/47 (72%)
 Frame = +3

Query: 309 IFNFGDSNSDTGGMAAASGLNIALPEGRTYFRRPTGRLSDGRLVIDF 449
           IFNFGDSNSDTGG++AA G     P G ++F  P GR  DGRLVIDF
Sbjct: 31  IFNFGDSNSDTGGLSAAFG-QAGPPHGSSFFGSPAGRYCDGRLVIDF 76



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>PARC_HUMAN (Q8IWT3) p53-associated parkin-like cytoplasmic protein|
            (UbcH7-associated protein 1)
          Length = 2517

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +1

Query: 118  RSACGCSTTCCWRGWARC--CSSP 183
            R   GC TTC   GWA C  CS P
Sbjct: 2172 RQGLGCGTTCSKCGWASCFNCSFP 2195



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>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:|
           [Acyl-carrier-protein] S-acetyltransferase (EC
           2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase
           (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase
           (EC 2.3.1.41); 3-oxoacyl-[acyl-ca
          Length = 2505

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 146 HVVLQPQADLGPAPAPSAVHP 84
           HV+LQP     PAPAP A  P
Sbjct: 401 HVILQPNTQQAPAPAPHAALP 421



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>BGBP1_DROME (Q9NHB0) Gram-negative bacteria-binding protein 1 precursor|
          Length = 494

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +3

Query: 258 VATRAGEPEGRKRSPVVIFN-----FGDSNSDTGGMAAASGLNIALPEGRTYFRRPTGRL 422
           +  RA  P+G    P+++       +G S  ++G       L +AL  G +  R P G+L
Sbjct: 289 IEIRAKLPKGDWIVPLLLLEPLTEWYGQSGYESGQ------LRVALARGNSVLRMPRGKL 342

Query: 423 SDGR 434
            DGR
Sbjct: 343 VDGR 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,175,228
Number of Sequences: 219361
Number of extensions: 449458
Number of successful extensions: 2069
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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