ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60a01 |
|---|---|
| Clone Library Name | barley_pub |
>HISX2_BACSK (Q5WDH8) Histidinol dehydrogenase 2 (EC 1.1.1.23) (HDH 2)| Length = 425 Score = 31.2 bits (69), Expect = 0.99 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +1 Query: 130 LLPCCSLTAATAPAGTIERVSKQQILASIPPGGHTSPPVLFLTSPSGKYAAYFVRA 297 L P TAA TI ++ Q +A++ G T PV +T P KY A RA Sbjct: 162 LPPAVLATAAELGVHTIYKLGGAQAVAALAYGTETVRPVDKITGPGNKYVALAKRA 217
>SYH_DEHSC (Q3ZWB6) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 418 Score = 31.2 bits (69), Expect = 0.99 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +2 Query: 242 PCCSSRLPPASTRPTSCALTPCQAPAGSAPTFATSRC 352 P C++RL + R C CQA AG+AP A C Sbjct: 191 PDCNTRLDKNTLRLLDCKRAECQAVAGNAPRSADYLC 227
>UL38_HCMVA (P16779) Protein UL38| Length = 331 Score = 30.4 bits (67), Expect = 1.7 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 10/78 (12%) Frame = +1 Query: 46 AHKQETREAASQPASQPAMEVMSSIAVLLLPCC----------SLTAATAPAGTIERVSK 195 AH Q T +QP+ PA V+S+ L LP S +AAT P ++ S Sbjct: 241 AHIQAT---GAQPSHAPAQRVLSAPPSLPLPVSEEDPAAAATPSSSAATTPPSSVVPASV 297 Query: 196 QQILASIPPGGHTSPPVL 249 + L+S PP PPV+ Sbjct: 298 ESELSSSPP----LPPVV 311
>DHB_CRAPL (P22239) Desiccation-related protein clone PCC6-19 (CDET6-19)| Length = 155 Score = 30.0 bits (66), Expect = 2.2 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 10/48 (20%) Frame = -1 Query: 342 VAKVGAEPAGAWH----------GVSAHEVGRVLAGGRREEQHGRAGV 229 +A+ G E G H G AH G ++ GG++ QHG GV Sbjct: 1 MAQFGGEKYGGRHTDEYGNPIQQGAGAHRGGGIMGGGQQAGQHGTTGV 48
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 27.7 bits (60), Expect(2) = 2.4 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +2 Query: 221 QEGTPARPCCSSRLPPASTRPTSCALTPCQAP 316 + G+P P S PP ST P S + P +P Sbjct: 206 KSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSP 237 Score = 20.8 bits (42), Expect(2) = 2.4 Identities = 9/28 (32%), Positives = 12/28 (42%) Frame = +1 Query: 160 TAPAGTIERVSKQQILASIPPGGHTSPP 243 T P G S + + P G T+PP Sbjct: 154 TPPGGAHSPKSSSPVSPTTSPPGSTTPP 181
>IBP1_RAT (P21743) Insulin-like growth factor-binding protein 1 precursor| (IGFBP-1) (IBP-1) (IGF-binding protein 1) Length = 272 Score = 29.6 bits (65), Expect = 2.9 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%) Frame = +2 Query: 242 PCCSSRLP---------PASTRPTSCALTP-CQAPAGSAPTFATSRC 352 PC + RL P +RP C P C P G+A AT+RC Sbjct: 34 PCTAERLELCPPVPASCPEISRPAGCGCCPTCALPLGAACGVATARC 80
>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated| protein 10.5) (High sulfur keratin-associated protein 10.5) (Keratin-associated protein 18-5) (Keratin-associated protein 18.5) Length = 271 Score = 29.6 bits (65), Expect = 2.9 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +2 Query: 224 EGTPARPCCSSRLPPASTRPTSCALTPCQ 310 E +P + C+S P+ +P CA +PCQ Sbjct: 57 EPSPCQSGCTSSCTPSCCQPACCASSPCQ 85
>IBP1_MOUSE (P47876) Insulin-like growth factor-binding protein 1 precursor| (IGFBP-1) (IBP-1) (IGF-binding protein 1) Length = 272 Score = 29.3 bits (64), Expect = 3.7 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%) Frame = +2 Query: 242 PCCSSRLP---------PASTRPTSCALTP-CQAPAGSAPTFATSRC 352 PC + RL P +RP C P C P G+A AT+RC Sbjct: 34 PCTAERLGLCPPVPASCPEISRPAGCGCCPTCALPMGAACGVATARC 80
>INH_YERRU (Q8VLP6) Alkaline proteinase inhibitor precursor (Metalloprotease| inhibitor) Length = 124 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +1 Query: 199 QILASIPPGGHTSPPVLFLTSPSGKYAAYFVRA-----HTVPGAGGL 324 Q+L S P G +P + LT +G A+F RA +T+P G+ Sbjct: 70 QLLGSAPQGWRPTPDGIMLTDETGSAVAFFERAQNGYENTLPDDAGV 116
>PITX3_RAT (P81062) Pituitary homeobox 3 (Homeobox protein PTX3)| Length = 302 Score = 28.9 bits (63), Expect = 4.9 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +1 Query: 85 ASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPG 225 ASQP SSIA ++P +AA AP GT+ Q L PPG Sbjct: 183 ASQPVFSPPSSIAASMVP----SAAAAP-GTVPGPGALQGLGGAPPG 224
>PITX3_MOUSE (O35160) Pituitary homeobox 3 (Homeobox protein PITX3)| Length = 302 Score = 28.9 bits (63), Expect = 4.9 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +1 Query: 85 ASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPG 225 ASQP SSIA ++P +AA AP GT+ Q L PPG Sbjct: 183 ASQPVFSPPSSIAASMVP----SAAAAP-GTVPGPGALQGLGGAPPG 224
>H12_ARATH (P26569) Histone H1.2| Length = 273 Score = 28.9 bits (63), Expect = 4.9 Identities = 15/51 (29%), Positives = 29/51 (56%) Frame = +1 Query: 67 EAASQPASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIP 219 +AA++ +PA +V++ V P +TAA + ++ VSK + +A+ P Sbjct: 167 KAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKP 217
>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1015 Score = 28.5 bits (62), Expect = 6.4 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 6/89 (6%) Frame = +1 Query: 76 SQPASQPAMEVMSSIAVL--LLPCCSLTAATAPAGTIERVSKQQILASIPPGGHTSPPVL 249 S P+ Q + + SS PC AAT+ T E VSK + A+ P +SP VL Sbjct: 494 SSPSGQQLLPLDSSTPSFGASKPCTEPVAATSARPTGESVSKDSMNATSTPAA-SSPSVL 552 Query: 250 FLTS---PSGKYAAYFV-RAHTVPGAGGL 324 S P + + F R+ PGA L Sbjct: 553 TTPSKIEPMKAFDSRFTERSKATPGAPSL 581
>RPOA_SHFV (Q68772) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3596 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +2 Query: 221 QEGTPARPCCSSRLPPASTRPTSCALTPCQA 313 Q G +P + PAS T CAL P QA Sbjct: 538 QVGCETKPVADAAAVPASVNSTGCALLPVQA 568
>IBP1_HUMAN (P08833) Insulin-like growth factor-binding protein 1 precursor| (IGFBP-1) (IBP-1) (IGF-binding protein 1) (Placental protein 12) (PP12) Length = 259 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 10/47 (21%) Frame = +2 Query: 242 PCCSSRL---PPAS------TRPTSCALTP-CQAPAGSAPTFATSRC 352 PC + +L PP S TR C P C P G+A AT+RC Sbjct: 32 PCSAEKLALCPPVSASCSEVTRSAGCGCCPMCALPLGAACGVATARC 78
>AMPH_RAT (O08838) Amphiphysin| Length = 683 Score = 28.5 bits (62), Expect = 6.4 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 58 ETREAASQPASQPAMEVMSSIAVLLLPCCSLTAATAPAGTIE-RVSKQQILASIPPG 225 ETREA A Q +A P S A APAG ++ +S +PPG Sbjct: 554 ETREATEDVAPQGPAGEKQELATEPTPLDSQAATPAPAGAVDASLSAGDAAQELPPG 610
>GSC_MOUSE (Q02591) Homeobox protein goosecoid| Length = 256 Score = 28.5 bits (62), Expect = 6.4 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = +2 Query: 218 HQEGTPARPCCSSRLPPASTRPTSCALTP 304 H + P P C +PP + SC TP Sbjct: 89 HVQAAPVGPACCGAVPPLGAQQCSCVPTP 117
>GSC_HUMAN (P56915) Homeobox protein goosecoid| Length = 257 Score = 28.5 bits (62), Expect = 6.4 Identities = 10/29 (34%), Positives = 13/29 (44%) Frame = +2 Query: 218 HQEGTPARPCCSSRLPPASTRPTSCALTP 304 H + P P C +PP + SC TP Sbjct: 89 HVQAAPVGPACCGAVPPLGAQQCSCVPTP 117
>Y411_STAAC (Q5HIV4) Hypothetical UPF0324 membrane protein SACOL0411| Length = 331 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -1 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y341_STAAM (Q99WN6) Hypothetical UPF0324 membrane protein SAV0341| Length = 331 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -1 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y338_STAAR (Q6GJX7) Hypothetical UPF0324 membrane protein SAR0338| Length = 331 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -1 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y329_STAAN (Q7A7M5) Hypothetical UPF0324 membrane protein SA0329| Length = 331 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -1 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y317_STAAW (Q8NYA5) Hypothetical UPF0324 membrane protein MW0317| Length = 331 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -1 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>Y317_STAAS (Q6GCD1) Hypothetical UPF0324 membrane protein SAS0317| Length = 331 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%) Frame = -1 Query: 315 GAWHGVSAHEVGR-VLAGG 262 GAW GVS HE+ VLAGG Sbjct: 184 GAWSGVSLHEIAHVVLAGG 202
>KRA3_CAPHI (P02442) Keratin, high-sulfur matrix protein, IIIA3 (M2.6 protein)| Length = 132 Score = 28.1 bits (61), Expect = 8.3 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Frame = +2 Query: 239 RPCC--SSRLPPAST-----RPTSCALTPCQAPAGSAPTFATSRC 352 RPCC ++ P S RPTSC PC + TF TS C Sbjct: 89 RPCCWATTCCQPVSVQCPCCRPTSCQPAPCSRT--TCRTFRTSPC 131
>KRA3_SHEEP (P02441) Keratin, high-sulfur matrix protein, IIIA3| Length = 131 Score = 28.1 bits (61), Expect = 8.3 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Frame = +2 Query: 239 RPCC--SSRLPPAST-----RPTSCALTPCQAPAGSAPTFATSRC 352 RPCC ++ P S RPTSC PC + TF TS C Sbjct: 88 RPCCWATTCCQPVSVQCPCCRPTSCQPAPCSRT--TCRTFRTSPC 130
>HSP83_ARATH (P51818) Heat shock protein 81-3 (HSP81-3) (HSP81.2)| Length = 699 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +1 Query: 103 EVMSSIAVLLLPCCSLTAATAPAGTIERVSKQQILASIPPGGHTS 237 +V+ S V+ PCC +T +ER+ K Q L GG+ S Sbjct: 556 KVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGGYMS 600
>PIM2_MOUSE (Q62070) Serine/threonine-protein kinase Pim-2 (EC 2.7.11.1)| Length = 370 Score = 28.1 bits (61), Expect = 8.3 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = +1 Query: 217 PPGGHTSPPVLFLTSPSGKYAAYF---VRAHTVPGAGGLGADF 336 P GH SPPV P GK A F R + G GG G F Sbjct: 64 PLQGHPSPPVTPTQPPGGKDRAAFEAEYRLGPLLGKGGFGTVF 106
>NAS6_HORVU (Q9ZQV3) Probable nicotianamine synthase 6 (EC 2.5.1.43)| (S-adenosyl-L-methionine:S-adenosyl-L-methionine:S- adenosyl-methionine 3-amino-3-carboxypropyltransferase 6) (HvNAS6) Length = 328 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 199 QILASIPPGGHTSPPVLFLTSPSGKYAAYFVRAHTVPGAGGLGADFC 339 ++LA PGG P V F+ S +++Y + A +P A D C Sbjct: 114 ELLARYVPGGIARPAVAFIGSGPLPFSSYVLAARHLPDAMFDNYDLC 160
>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 870 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/45 (35%), Positives = 19/45 (42%) Frame = +2 Query: 221 QEGTPARPCCSSRLPPASTRPTSCALTPCQAPAGSAPTFATSRCW 355 +EG PA P S L P P+ P APA S T + W Sbjct: 429 EEGEPAPPVPSPSLAPPVPSPSPAPPVPSPAPAPSEATPKSLHPW 473
>KR111_CAPHI (Q6R648) Keratin-associated protein 11-1 (High sulfur| keratin-associated protein 11.1) Length = 159 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +2 Query: 242 PCCSSRLPPASTRPTSCALTPCQAPAGSAPTFATSRC 352 PC SS + S R T+C +PC TF +S C Sbjct: 72 PCVSSPVQVTS-RQTTCVSSPCSTTCSRPLTFISSGC 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.130 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,095,320 Number of Sequences: 219361 Number of extensions: 813526 Number of successful extensions: 3964 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3944 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
