ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60a01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_194925.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNAa0034B05.10), mRNA Length = 1125 Score = 157 bits (79), Expect = 3e-35 Identities = 106/115 (92%) Strand = Plus / Plus Query: 237 cccgcccgtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgc 296 ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| | Sbjct: 153 cccgcccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctc 212 Query: 297 tcacaccgtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 |||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 213 gcacaccgtccccggcgccggcgggctcggcgccgacttctgctacgtcgaggtg 267 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 175 acgatcgagcgcgtgtccaagcagcagatcctggcgagcatccc 218 |||||||||||||| ||||||||||||||| || |||||||| Sbjct: 79 acgatcgagcgcgtcgtcaagcagcagatcctcgccagcatccc 122
>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0004E08, complete sequence Length = 158294 Score = 157 bits (79), Expect = 3e-35 Identities = 106/115 (92%) Strand = Plus / Plus Query: 237 cccgcccgtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgc 296 ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| | Sbjct: 33192 cccgcccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctc 33251 Query: 297 tcacaccgtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 |||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 33252 gcacaccgtccccggcgccggcgggctcggcgccgacttctgctacgtcgaggtg 33306 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 175 acgatcgagcgcgtgtccaagcagcagatcctggcgagcatccc 218 |||||||||||||| ||||||||||||||| || |||||||| Sbjct: 33118 acgatcgagcgcgtcgtcaagcagcagatcctcgccagcatccc 33161
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05, complete sequence Length = 125655 Score = 157 bits (79), Expect = 3e-35 Identities = 106/115 (92%) Strand = Plus / Plus Query: 237 cccgcccgtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgc 296 ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| | Sbjct: 98847 cccgcccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctc 98906 Query: 297 tcacaccgtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 |||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 98907 gcacaccgtccccggcgccggcgggctcggcgccgacttctgctacgtcgaggtg 98961 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 175 acgatcgagcgcgtgtccaagcagcagatcctggcgagcatccc 218 |||||||||||||| ||||||||||||||| || |||||||| Sbjct: 98773 acgatcgagcgcgtcgtcaagcagcagatcctcgccagcatccc 98816
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 157 bits (79), Expect = 3e-35 Identities = 106/115 (92%) Strand = Plus / Plus Query: 237 cccgcccgtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgc 296 ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| | Sbjct: 3442063 cccgcccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctc 3442122 Query: 297 tcacaccgtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 |||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 3442123 gcacaccgtccccggcgccggcgggctcggcgccgacttctgctacgtcgaggtg 3442177 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 175 acgatcgagcgcgtgtccaagcagcagatcctggcgagcatccc 218 |||||||||||||| ||||||||||||||| || |||||||| Sbjct: 3441989 acgatcgagcgcgtcgtcaagcagcagatcctcgccagcatccc 3442032
>dbj|AK108770.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H05, full insert sequence Length = 1436 Score = 157 bits (79), Expect = 3e-35 Identities = 106/115 (92%) Strand = Plus / Plus Query: 237 cccgcccgtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgc 296 ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| | Sbjct: 227 cccgcccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctc 286 Query: 297 tcacaccgtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 |||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 287 gcacaccgtccccggcgccggcgggctcggcgccgacttctgctacgtcgaggtg 341 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 175 acgatcgagcgcgtgtccaagcagcagatcctggcgagcatccc 218 |||||||||||||| ||||||||||||||| || |||||||| Sbjct: 153 acgatcgagcgcgtcgtcaagcagcagatcctcgccagcatccc 196
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 157 bits (79), Expect = 3e-35 Identities = 106/115 (92%) Strand = Plus / Plus Query: 237 cccgcccgtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgc 296 ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| | Sbjct: 3441984 cccgcccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctc 3442043 Query: 297 tcacaccgtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 |||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 3442044 gcacaccgtccccggcgccggcgggctcggcgccgacttctgctacgtcgaggtg 3442098 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 175 acgatcgagcgcgtgtccaagcagcagatcctggcgagcatccc 218 |||||||||||||| ||||||||||||||| || |||||||| Sbjct: 3441910 acgatcgagcgcgtcgtcaagcagcagatcctcgccagcatccc 3441953
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 244 gtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgctcacacc 303 ||||||||||| ||||| || || ||||||||| |||| |||||| ||||| || ||| Sbjct: 7652169 gtgctgttcctgacgtcgccgtcgggcaagtacacggcgtacttcctgcgcagccagacc 7652110 Query: 304 gtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 | ||| ||||||||||| |||||||||||||| |||||||| |||||| Sbjct: 7652109 gcgccgggcgccggcggcctcggcgccgacttctgctacgtggaggtg 7652062 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 193 aagcagcagatcctggcgagcatccc 218 ||||||||||||||||| |||||||| Sbjct: 7652217 aagcagcagatcctggccagcatccc 7652192
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 244 gtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgctcacacc 303 ||||||||||| ||||| || || ||||||||| |||| |||||| ||||| || ||| Sbjct: 63121 gtgctgttcctgacgtcgccgtcgggcaagtacacggcgtacttcctgcgcagccagacc 63180 Query: 304 gtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 | ||| ||||||||||| |||||||||||||| |||||||| |||||| Sbjct: 63181 gcgccgggcgccggcggcctcggcgccgacttctgctacgtggaggtg 63228 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 193 aagcagcagatcctggcgagcatccc 218 ||||||||||||||||| |||||||| Sbjct: 63073 aagcagcagatcctggccagcatccc 63098
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 244 gtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgctcacacc 303 ||||||||||| ||||| || || ||||||||| |||| |||||| ||||| || ||| Sbjct: 7650004 gtgctgttcctgacgtcgccgtcgggcaagtacacggcgtacttcctgcgcagccagacc 7649945 Query: 304 gtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 | ||| ||||||||||| |||||||||||||| |||||||| |||||| Sbjct: 7649944 gcgccgggcgccggcggcctcggcgccgacttctgctacgtggaggtg 7649897 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 193 aagcagcagatcctggcgagcatccc 218 ||||||||||||||||| |||||||| Sbjct: 7650052 aagcagcagatcctggccagcatccc 7650027
>dbj|AK064707.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A07, full insert sequence Length = 1269 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 244 gtgctgttcctcacgtctccctccggcaagtacgcggcctacttcgtgcgcgctcacacc 303 ||||||||||| ||||| || || ||||||||| |||| |||||| ||||| || ||| Sbjct: 267 gtgctgttcctgacgtcgccgtcgggcaagtacacggcgtacttcctgcgcagccagacc 326 Query: 304 gtgccaggcgccggcgggctcggcgccgacttttgctacgtcgaggtg 351 | ||| ||||||||||| |||||||||||||| |||||||| |||||| Sbjct: 327 gcgccgggcgccggcggcctcggcgccgacttctgctacgtggaggtg 374 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 193 aagcagcagatcctggcgagcatccc 218 ||||||||||||||||| |||||||| Sbjct: 219 aagcagcagatcctggccagcatccc 244
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 310 ggcgccggcgggctcggcgccg 331 |||||||||||||||||||||| Sbjct: 838601 ggcgccggcgggctcggcgccg 838622
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 310 ggcgccggcgggctcggcgccg 331 |||||||||||||||||||||| Sbjct: 171236 ggcgccggcgggctcggcgccg 171257
>emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032B23, complete sequence Length = 120640 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 348 ggtgttggccggcggtgagggcgaag 373 ||||||||||||||||||||| |||| Sbjct: 71954 ggtgttggccggcggtgagggagaag 71979
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 348 ggtgttggccggcggtgagggcgaag 373 ||||||||||||||||||||| |||| Sbjct: 9977004 ggtgttggccggcggtgagggagaag 9977029
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 150 cacggccgcgacggcgccggccggcacgat 179 |||||| ||||||||||||||| ||||||| Sbjct: 2352601 cacggcggcgacggcgccggccagcacgat 2352572
>ref|XM_450677.1| Oryza sativa (japonica cultivar-group), mRNA Length = 876 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggc 381 ||||||||||||||||||||| Sbjct: 825 ggtgagggcgaaggcggcggc 805
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 cggccgcgacggcgccggccg 172 ||||||||||||||||||||| Sbjct: 867434 cggccgcgacggcgccggccg 867414
>ref|NM_186415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 858 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 cggccgcgacggcgccggccg 172 ||||||||||||||||||||| Sbjct: 551 cggccgcgacggcgccggccg 571
>ref|XM_417985.1| PREDICTED: Gallus gallus similar to plexin A2; plexin 2; plexin-A2 (LOC419857), mRNA Length = 7233 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 ggcagcggtgcccacgcgagc 399 ||||||||||||||||||||| Sbjct: 4677 ggcagcggtgcccacgcgagc 4657
>ref|XM_817915.1| Trypanosoma brucei TREU927 protein transport protein Sec23A (Tb10.6k15.2840) partial mRNA Length = 2235 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 gaaggcggcggcagcggtgcc 390 ||||||||||||||||||||| Sbjct: 918 gaaggcggcggcagcggtgcc 898
>gb|AY354515.1| Streptomyces sp. HK803 PlmR5 (plmR5), PlmR4 (plmR4), PlmR3 (plmR3), PlmR2 (plmR2), Plm8 (plm8), Plm4 (plm4), Plm5 (plm5), Plm6 (plm6), Plm7 (plm7), PlmT8 (plmT8), PlmT7 (plmT7), PlmT6 (plmT6), PlmT5 (plmT5), PlmT4 (plmT4), PlmT3 (plmT3), PlmT2 (plmT2), PlmT1 (plmT1), Plm1 (plm1), Plm2-3 (plm2-3), PlmJK (plmJK), PlmL (plmL), ChcA (chcA), PlmM (plmM), PlmR1 (plmR1), PlmI (plmI), PlmS2 (plmS2), PlmS3 (plmS3), and PlmS4 (plmS4) genes, complete cds Length = 76196 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 cggccgcgacggcgccggccg 172 ||||||||||||||||||||| Sbjct: 43502 cggccgcgacggcgccggccg 43522
>gb|AC114699.5| Rattus norvegicus 19 BAC CH230-235A3 (Children's Hospital Oakland Research Institute) complete sequence Length = 224930 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 tccacaaccacaacacagcca 27 ||||||||||||||||||||| Sbjct: 39622 tccacaaccacaacacagcca 39642
>gb|AY305028.1| Oryza sativa (japonica cultivar-group) DRE binding factor 2 (DBF2) mRNA, complete cds Length = 1403 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggc 381 ||||||||||||||||||||| Sbjct: 1125 ggtgagggcgaaggcggcggc 1105
>gb|AC151612.2| Emiliania huxleyi clone JGIACCU-13I1, complete sequence Length = 35427 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 357 cggcggtgagggcgaaggcggcggc 381 |||||| |||||||||||||||||| Sbjct: 13170 cggcggcgagggcgaaggcggcggc 13146
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 gcgccggcgggctcggcgccg 331 ||||||||||||||||||||| Sbjct: 24190436 gcgccggcgggctcggcgccg 24190456 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 cgccggcgggctcggcgccg 331 |||||||||||||||||||| Sbjct: 24215661 cgccggcgggctcggcgccg 24215680
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggc 381 ||||||||||||||||||||| Sbjct: 12164037 ggtgagggcgaaggcggcggc 12164017
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 cggccgcgacggcgccggccg 172 ||||||||||||||||||||| Sbjct: 3353592 cggccgcgacggcgccggccg 3353572
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 305 tgccaggcgccggcgggctcggcgccgac 333 |||||||||||||||||| ||||| |||| Sbjct: 3391121 tgccaggcgccggcgggcgcggcgtcgac 3391093
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggc 381 ||||||||||||||||||||| Sbjct: 75496 ggtgagggcgaaggcggcggc 75476
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggc 381 ||||||||||||||||||||| Sbjct: 98416 ggtgagggcgaaggcggcggc 98396
>dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, map 22, complete sequences Length = 148847 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 aacacagccacagcccacgga 38 ||||||||||||||||||||| Sbjct: 133248 aacacagccacagcccacgga 133268
>ref|XM_315869.2| Anopheles gambiae str. PEST ENSANGP00000017465 (ENSANGG00000014976), partial mRNA Length = 1044 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 agtacgcggcctacttcgtgc 292 ||||||||||||||||||||| Sbjct: 467 agtacgcggcctacttcgtgc 447
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 377 gcggcagcggtgcccacgcgagcgc 401 ||||||||||||||||||| ||||| Sbjct: 134550 gcggcagcggtgcccacgccagcgc 134526
>dbj|AK061033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H09, full insert sequence Length = 1019 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggc 381 ||||||||||||||||||||| Sbjct: 504 ggtgagggcgaaggcggcggc 484
>dbj|AK058899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A04, full insert sequence Length = 902 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggc 381 ||||||||||||||||||||| Sbjct: 356 ggtgagggcgaaggcggcggc 336
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 cggccgcgacggcgccggccg 172 ||||||||||||||||||||| Sbjct: 163285 cggccgcgacggcgccggccg 163265
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 cggccgcgacggcgccggccg 172 ||||||||||||||||||||| Sbjct: 1190267 cggccgcgacggcgccggccg 1190247
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 gcgccggcgggctcggcgccg 331 ||||||||||||||||||||| Sbjct: 24118642 gcgccggcgggctcggcgccg 24118662 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 cgccggcgggctcggcgccg 331 |||||||||||||||||||| Sbjct: 24143867 cgccggcgggctcggcgccg 24143886
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 gcgccggcgggctcggcgccg 331 ||||||||||||||||||||| Sbjct: 75127 gcgccggcgggctcggcgccg 75147 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 cgccggcgggctcggcgccg 331 |||||||||||||||||||| Sbjct: 100352 cgccggcgggctcggcgccg 100371
>emb|AL663037.13| Mouse DNA sequence from clone RP23-103K12 on chromosome 4, complete sequence Length = 246021 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 8 ccacaaccacaacacagccacagcc 32 ||||||||||| ||||||||||||| Sbjct: 2461 ccacaaccacagcacagccacagcc 2437
>gb|AY658713.1| Synthetic construct Peudomonas aeruginosa clone FLH034757.01F PA4524 gene, partial cds Length = 849 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 ggccggcggtgagggcgaaggcgg 377 |||||||||||||||||| ||||| Sbjct: 709 ggccggcggtgagggcgacggcgg 686
>gb|BC019566.1| Mus musculus death associated protein 3, mRNA (cDNA clone MGC:28659 IMAGE:4235517), complete cds Length = 2003 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggcagc 384 |||| ||||||||||||||||||| Sbjct: 30 ggtgggggcgaaggcggcggcagc 7
>ref|NM_022994.2| Mus musculus death associated protein 3 (Dap3), mRNA Length = 2003 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcggcagc 384 |||| ||||||||||||||||||| Sbjct: 30 ggtgggggcgaaggcggcggcagc 7
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cggccgcgacggcgccggcc 171 |||||||||||||||||||| Sbjct: 1072606 cggccgcgacggcgccggcc 1072625
>gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome 3, complete sequence Length = 195767 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 ggtgagggcgaaggcggcggcagc 384 |||| ||||||||||||||||||| Sbjct: 167560 ggtgggggcgaaggcggcggcagc 167583
>gb|AC122929.4| Mus musculus BAC clone RP23-12A18 from chromosome 6, complete sequence Length = 252503 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ggcgaaggcggcggcagcgg 386 |||||||||||||||||||| Sbjct: 160892 ggcgaaggcggcggcagcgg 160873
>emb|X70354.1|PGLIP P.glumae genes lipA and lipB Length = 2900 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 ccgcgacggcgccggccggc 174 |||||||||||||||||||| Sbjct: 1721 ccgcgacggcgccggccggc 1702
>gb|AC124958.13| Medicago truncatula clone mth2-18i11, complete sequence Length = 120562 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 caagcacacaagcaagaaac 62 |||||||||||||||||||| Sbjct: 65234 caagcacacaagcaagaaac 65215
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 gcgccggccggcacgatcgagcgc 186 |||||||||||||||||| ||||| Sbjct: 2230977 gcgccggccggcacgatccagcgc 2230954 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggcgccggcgggctcggcgc 329 |||||||||||||||||||| Sbjct: 247006 ggcgccggcgggctcggcgc 247025
>gb|BT009384.1| Triticum aestivum clone wlm96.pk033.h5:fis, full insert mRNA sequence Length = 2653 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 acggccgcgacggcgccggc 170 |||||||||||||||||||| Sbjct: 775 acggccgcgacggcgccggc 756
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 363 tgagggcgaaggcggcggcagcggtgcc 390 ||||||||||||||||| | |||||||| Sbjct: 271793 tgagggcgaaggcggcgaccgcggtgcc 271766
>emb|AL583926.1|MLEPRTN10 Mycobacterium leprae strain TN complete genome; segment 10/10 Length = 269203 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cgccggccggcacgatcgag 183 |||||||||||||||||||| Sbjct: 97607 cgccggccggcacgatcgag 97588
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcgccggcgggctcggcgc 329 |||||||||||||||||||| Sbjct: 389467 ggcgccggcgggctcggcgc 389448
>gb|AC144474.22| Medicago truncatula clone mth2-15l5, complete sequence Length = 142202 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 caagcacacaagcaagaaac 62 |||||||||||||||||||| Sbjct: 55328 caagcacacaagcaagaaac 55347
>gb|L78828.1|MSGB983CS Mycobacterium leprae cosmid B983 DNA sequence Length = 36788 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cgccggccggcacgatcgag 183 |||||||||||||||||||| Sbjct: 12599 cgccggccggcacgatcgag 12580
>gb|AF069761.1|AF069761 Halobacterium salinarum hydroperoxidase gene, complete cds Length = 3508 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 ggcgccggcgggctcggcgccgac 333 |||| ||||||||||||||||||| Sbjct: 1749 ggcggcggcgggctcggcgccgac 1726
>dbj|AB089690.2| Sphingomonas paucimobilis orf1, ligW2, orf3 genes for putative vanillin dehydrogenase, 5-carboxyvanillic acid decarboxylse, 5-carboxyvanillic acid transport protein, complete cds Length = 4891 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 gcgacggcgccggccggcac 176 |||||||||||||||||||| Sbjct: 3483 gcgacggcgccggccggcac 3502
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcgccggcgggctcggcgc 329 |||||||||||||||||||| Sbjct: 696145 ggcgccggcgggctcggcgc 696126
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 367 ggcgaaggcggcggcagcggtgcccacg 394 ||||||||||||||| |||||| ||||| Sbjct: 9579 ggcgaaggcggcggcggcggtggccacg 9606
>gb|AE004866.1| Pseudomonas aeruginosa PAO1, section 427 of 529 of the complete genome Length = 11518 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 ggccggcggtgagggcgaaggcgg 377 |||||||||||||||||| ||||| Sbjct: 8714 ggccggcggtgagggcgacggcgg 8691
>gb|AE004832.1| Pseudomonas aeruginosa PAO1, section 393 of 529 of the complete genome Length = 10505 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 ggcggtgagggcgaaggcggcggc 381 ||||| |||||||||||||||||| Sbjct: 8205 ggcggcgagggcgaaggcggcggc 8182
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 gcgccggccggcacgatcgagcgc 186 |||||||||||||||||| ||||| Sbjct: 1794039 gcgccggccggcacgatccagcgc 1794016 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 acggccgcgacggcgccggccggc 174 |||||||||||| ||||||||||| Sbjct: 1558743 acggccgcgacgccgccggccggc 1558720 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 gccgcgacggcgccggccggcacg 177 |||| ||||||||||||||||||| Sbjct: 1412466 gccgtgacggcgccggccggcacg 1412489
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggcgccggcgggctcggcgc 329 |||||||||||||||||||| Sbjct: 820047 ggcgccggcgggctcggcgc 820066
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ccggcgggctcggcgccgac 333 |||||||||||||||||||| Sbjct: 3058433 ccggcgggctcggcgccgac 3058414
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 ggcggtgagggcgaaggcggcggc 381 |||||||||| ||||||||||||| Sbjct: 1824805 ggcggtgaggacgaaggcggcggc 1824828
>gb|AE005159.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 20 of 32 of the complete genome Length = 11050 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 ggcgccggcgggctcggcgccgac 333 |||| ||||||||||||||||||| Sbjct: 8789 ggcggcggcgggctcggcgccgac 8812
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ggccgcgacggcgccggccg 172 |||||||||||||||||||| Sbjct: 3684720 ggccgcgacggcgccggccg 3684701
>gb|U27709.1|PAU27709 Pseudomonas aeruginosa nicotinate-nucleotide pyrophosphorylase gene, complete cds, and tRNA-Thr gene, complete sequence Length = 1200 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 ggccggcggtgagggcgaaggcgg 377 |||||||||||||||||| ||||| Sbjct: 871 ggccggcggtgagggcgacggcgg 848
>gb|AC120557.12| Mus musculus chromosome 19, clone RP24-493E6, complete sequence Length = 169131 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 373 ggcggcggcagcggtgcccacgcg 396 ||||||||||||||||||| |||| Sbjct: 137010 ggcggcggcagcggtgcccgcgcg 137033
>gb|AF027955.1|AF027955 Mus musculus G protein-coupled receptor (GPR27) gene, complete cds Length = 2679 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ggcgaaggcggcggcagcgg 386 |||||||||||||||||||| Sbjct: 756 ggcgaaggcggcggcagcgg 775
>dbj|D45076.1|PNIAA Panicum miliaceum mRNA for plastidic aspartate aminotransferase , complete cds Length = 1681 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ggtgagggcgaaggcggcgg 380 |||||||||||||||||||| Sbjct: 90 ggtgagggcgaaggcggcgg 71
>dbj|AB028210.1| Streptomyces griseus hya and kan genes for hyaluronidase and aminoglycoside 3-N-acetyltransferase, complete cds Length = 4265 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tcacggccgcgacggcgccg 168 |||||||||||||||||||| Sbjct: 1953 tcacggccgcgacggcgccg 1972 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,589,801 Number of Sequences: 3902068 Number of extensions: 2589801 Number of successful extensions: 78541 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75256 Number of HSP's gapped (non-prelim): 3285 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
