ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart59h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192688.1| Oryza sativa (japonica cultivar-group), predic... 38 1.6
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.6
3gb|AC069384.6| Homo sapiens BAC clone RP11-205B19 from 2, comple... 38 1.6
4dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 38 1.6
5gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 36 6.4
6ref|XM_462538.1| Debaryomyces hansenii CBS767 hypothetical prote... 36 6.4
7gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, com... 36 6.4
8emb|AL049612.11|HSJ182D15 Human DNA sequence from clone RP1-182D... 36 6.4
9gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, co... 36 6.4
10emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 36 6.4
11gb|AC100775.3| Homo sapiens chromosome 18, clone CTD-2526M8, com... 36 6.4
12emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encep... 36 6.4
13gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, co... 36 6.4
14gb|DQ085277.1| Anas platyrhynchos genomic sequence 36 6.4
15gb|AY510475.1| Gallid herpesvirus 2 clone Md11BAC replication in... 36 6.4
16gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosom... 36 6.4
17gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complet... 36 6.4

>ref|NM_192688.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 723

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 30  cgccgggcctctcttcgcc 48
           |||||||||||||||||||
Sbjct: 196 cgccgggcctctcttcgcc 178



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 30       cgccgggcctctcttcgcc 48
                |||||||||||||||||||
Sbjct: 23871951 cgccgggcctctcttcgcc 23871969



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>gb|AC069384.6| Homo sapiens BAC clone RP11-205B19 from 2, complete sequence
          Length = 166975

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      aactctcccagcaaatccc 24
              |||||||||||||||||||
Sbjct: 119349 aactctcccagcaaatccc 119367



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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    cgccgggcctctcttcgcc 48
             |||||||||||||||||||
Sbjct: 18355 cgccgggcctctcttcgcc 18373



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>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
             OSJNBb0052C07, complete sequence
          Length = 154528

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 8     ctctcccagcaaatcccatttc 29
             |||||||||||||| |||||||
Sbjct: 71231 ctctcccagcaaattccatttc 71252



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>ref|XM_462538.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G24200g)
            partial mRNA
          Length = 4053

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   ccagcaaatcccatttcc 30
            ||||||||||||||||||
Sbjct: 2837 ccagcaaatcccatttcc 2820



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>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence
          Length = 213683

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    ctcccagcaaatcccatt 27
             ||||||||||||||||||
Sbjct: 78633 ctcccagcaaatcccatt 78650



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>emb|AL049612.11|HSJ182D15 Human DNA sequence from clone RP1-182D15 on chromosome 6q26-27 Contains
             the 3' end of the gene for hypothetical protein FLJ13162
             and a novel gene, complete sequence
          Length = 79576

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    ccagcaaatcccatttcc 30
             ||||||||||||||||||
Sbjct: 46344 ccagcaaatcccatttcc 46327



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>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence
          Length = 200979

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 2  tggaaactctcccagcaa 19
          ||||||||||||||||||
Sbjct: 59 tggaaactctcccagcaa 42



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>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
               hansenii
          Length = 2051428

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 13      ccagcaaatcccatttcc 30
               ||||||||||||||||||
Sbjct: 1854152 ccagcaaatcccatttcc 1854169



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>gb|AC100775.3| Homo sapiens chromosome 18, clone CTD-2526M8, complete sequence
          Length = 175268

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 2      tggaaactctcccagcaa 19
              ||||||||||||||||||
Sbjct: 135066 tggaaactctcccagcaa 135049



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>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi
             (Microspora)
          Length = 238147

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 9     tctcccagcaaatcccatttcc 30
             ||||||| ||||||||||||||
Sbjct: 59498 tctcccatcaaatcccatttcc 59519



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>gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, complete sequence
          Length = 189559

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     tggaaactctcccagcaa 19
             ||||||||||||||||||
Sbjct: 12459 tggaaactctcccagcaa 12442



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>gb|DQ085277.1| Anas platyrhynchos genomic sequence
          Length = 6255

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    gaaactctcccagcaaat 21
            ||||||||||||||||||
Sbjct: 3752 gaaactctcccagcaaat 3769



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>gb|AY510475.1| Gallid herpesvirus 2 clone Md11BAC replication intermediate, complete
            genome
          Length = 170950

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 4    gaaactctcccagcaaat 21
            ||||||||||||||||||
Sbjct: 8522 gaaactctcccagcaaat 8539



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>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete
             sequence
          Length = 222209

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    ctcccagcaaatcccatt 27
             ||||||||||||||||||
Sbjct: 69596 ctcccagcaaatcccatt 69613



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>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence
          Length = 217949

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    ctcccagcaaatcccatt 27
             ||||||||||||||||||
Sbjct: 38162 ctcccagcaaatcccatt 38145


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 407,537
Number of Sequences: 3902068
Number of extensions: 407537
Number of successful extensions: 95797
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95746
Number of HSP's gapped (non-prelim): 51
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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