Clone Name | bart59h12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_192688.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 723 Score = 38.2 bits (19), Expect = 1.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 cgccgggcctctcttcgcc 48 ||||||||||||||||||| Sbjct: 196 cgccgggcctctcttcgcc 178
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 1.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 cgccgggcctctcttcgcc 48 ||||||||||||||||||| Sbjct: 23871951 cgccgggcctctcttcgcc 23871969
>gb|AC069384.6| Homo sapiens BAC clone RP11-205B19 from 2, complete sequence Length = 166975 Score = 38.2 bits (19), Expect = 1.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 aactctcccagcaaatccc 24 ||||||||||||||||||| Sbjct: 119349 aactctcccagcaaatccc 119367
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 38.2 bits (19), Expect = 1.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 cgccgggcctctcttcgcc 48 ||||||||||||||||||| Sbjct: 18355 cgccgggcctctcttcgcc 18373
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 36.2 bits (18), Expect = 6.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 8 ctctcccagcaaatcccatttc 29 |||||||||||||| ||||||| Sbjct: 71231 ctctcccagcaaattccatttc 71252
>ref|XM_462538.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G24200g) partial mRNA Length = 4053 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 ccagcaaatcccatttcc 30 |||||||||||||||||| Sbjct: 2837 ccagcaaatcccatttcc 2820
>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence Length = 213683 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 ctcccagcaaatcccatt 27 |||||||||||||||||| Sbjct: 78633 ctcccagcaaatcccatt 78650
>emb|AL049612.11|HSJ182D15 Human DNA sequence from clone RP1-182D15 on chromosome 6q26-27 Contains the 3' end of the gene for hypothetical protein FLJ13162 and a novel gene, complete sequence Length = 79576 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 ccagcaaatcccatttcc 30 |||||||||||||||||| Sbjct: 46344 ccagcaaatcccatttcc 46327
>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence Length = 200979 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 tggaaactctcccagcaa 19 |||||||||||||||||| Sbjct: 59 tggaaactctcccagcaa 42
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 ccagcaaatcccatttcc 30 |||||||||||||||||| Sbjct: 1854152 ccagcaaatcccatttcc 1854169
>gb|AC100775.3| Homo sapiens chromosome 18, clone CTD-2526M8, complete sequence Length = 175268 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 tggaaactctcccagcaa 19 |||||||||||||||||| Sbjct: 135066 tggaaactctcccagcaa 135049
>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 238147 Score = 36.2 bits (18), Expect = 6.4 Identities = 21/22 (95%) Strand = Plus / Plus Query: 9 tctcccagcaaatcccatttcc 30 ||||||| |||||||||||||| Sbjct: 59498 tctcccatcaaatcccatttcc 59519
>gb|AC099845.2| Homo sapiens chromosome 18, clone RP11-812D21, complete sequence Length = 189559 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 tggaaactctcccagcaa 19 |||||||||||||||||| Sbjct: 12459 tggaaactctcccagcaa 12442
>gb|DQ085277.1| Anas platyrhynchos genomic sequence Length = 6255 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 gaaactctcccagcaaat 21 |||||||||||||||||| Sbjct: 3752 gaaactctcccagcaaat 3769
>gb|AY510475.1| Gallid herpesvirus 2 clone Md11BAC replication intermediate, complete genome Length = 170950 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 4 gaaactctcccagcaaat 21 |||||||||||||||||| Sbjct: 8522 gaaactctcccagcaaat 8539
>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence Length = 222209 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 10 ctcccagcaaatcccatt 27 |||||||||||||||||| Sbjct: 69596 ctcccagcaaatcccatt 69613
>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence Length = 217949 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 ctcccagcaaatcccatt 27 |||||||||||||||||| Sbjct: 38162 ctcccagcaaatcccatt 38145 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 407,537 Number of Sequences: 3902068 Number of extensions: 407537 Number of successful extensions: 95797 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95746 Number of HSP's gapped (non-prelim): 51 length of query: 49 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 29 effective length of database: 17,155,003,908 effective search space: 497495113332 effective search space used: 497495113332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)