ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59h11 |
|---|---|
| Clone Library Name | barley_pub |
>DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor| Length = 1204 Score = 31.6 bits (70), Expect = 0.52 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%) Frame = -2 Query: 168 GALCSCKLKLASFIPSW-----PAQLWWRETDSSCALP 70 G +CS + ++ IP W P+Q WW T ++ A P Sbjct: 476 GVICSDAQRSSTVIPDWWYTTTPSQTWWHPTTTTAASP 513
>BIOF_MYCTU (P0A4X4) 8-amino-7-oxononanoate synthase (EC 2.3.1.47) (AONS)| (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase) Length = 386 Score = 30.8 bits (68), Expect = 0.89 Identities = 22/54 (40%), Positives = 29/54 (53%) Frame = +1 Query: 16 LLLPLPRSAIASAPACFSGQGTARVCFPPPQLCRPRGDKASQL*LTAAKRANSG 177 ++L P SA+A+A AC G CF PP + P G S+L LTA N+G Sbjct: 320 VILGEPESAVAAAAACLDA-GVKVGCFRPPTV--PAG--TSRLRLTARASLNAG 368
>BIOF_MYCBO (P0A4X5) 8-amino-7-oxononanoate synthase (EC 2.3.1.47) (AONS)| (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase) Length = 386 Score = 30.8 bits (68), Expect = 0.89 Identities = 22/54 (40%), Positives = 29/54 (53%) Frame = +1 Query: 16 LLLPLPRSAIASAPACFSGQGTARVCFPPPQLCRPRGDKASQL*LTAAKRANSG 177 ++L P SA+A+A AC G CF PP + P G S+L LTA N+G Sbjct: 320 VILGEPESAVAAAAACLDA-GVKVGCFRPPTV--PAG--TSRLRLTARASLNAG 368
>TAL1_MOUSE (P22091) T-cell acute lymphocytic leukemia-1 protein homolog (TAL-1| protein) (Stem cell protein) Length = 329 Score = 30.0 bits (66), Expect = 1.5 Identities = 21/56 (37%), Positives = 24/56 (42%) Frame = +1 Query: 25 PLPRSAIASAPACFSGQGTARVCFPPPQLCRPRGDKASQL*LTAAKRANSGGGMLG 192 P P A ASAPA G G V PP L P G + L + A+ G G G Sbjct: 99 PAPAPAPASAPAELPGDG-RMVQLSPPALAAPAGPGRALLYSLSQPLASLGSGFFG 153
>PRAM8_HUMAN (Q5VWM4) PRAME family member 8| Length = 474 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 77 AQLESVSRHHSCAGHEGIKLASFNLQLQSAPIQGAACWGR 196 A LE++ RH G + L + L+S QGA CWGR Sbjct: 391 AALENLLRH--TVGLSKLSLELYPAPLESYDTQGALCWGR 428
>PRAM7_HUMAN (Q5VXH5) PRAME family member 7| Length = 474 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 77 AQLESVSRHHSCAGHEGIKLASFNLQLQSAPIQGAACWGR 196 A LE++ RH G + L + L+S QGA CWGR Sbjct: 391 AALENLLRH--TVGLSKLSLELYPAPLESYDTQGALCWGR 428
>PRA12_HUMAN (O95522) PRAME family member DJ1198H6.2| Length = 483 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 77 AQLESVSRHHSCAGHEGIKLASFNLQLQSAPIQGAACWGR 196 A LE++ RH G + L + L+S QGA CWGR Sbjct: 391 AALENLLRH--TVGLSKLSLELYPAPLESYDAQGALCWGR 428
>STON1_MOUSE (Q8CDJ8) Stonin-1 (Stoned B-like factor)| Length = 730 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -2 Query: 180 AP*IGALCSCKLKLASF-IPS-WPAQLWWRETDSSCALPGKASRRRCNG 40 +P GAL SC + F +P+ W LW R +L K +RR C G Sbjct: 551 SPHAGALRSCNNIMIHFPVPAQWIKALWTRNLQRQKSLKAKMNRRACLG 599
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 243 PPHGERPQLDGGGAFPRPQHAAP*IGA 163 PP+G+ PQ++ FP ++ P IGA Sbjct: 741 PPNGQVPQVNNSSTFPSSGNSTPNIGA 767
>NOS_ORYSA (Q6YPG5) Putative nitric-oxide synthase (EC 1.14.13.39)| Length = 547 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = +1 Query: 7 IYLLLLPLPRSAIASAPACFSGQGTARVCFPPPQLCRP----RGDK--ASQL*LTAAKR 165 + L L LP+ +A P+ FS A PPP+ P RGD+ +QL AA R Sbjct: 13 LLFLSLSLPKPQLAPNPSSFSPTRAASTAPPPPEGAGPAAPSRGDRFLGTQLAAEAAAR 71
>RPA2_DROME (P20028) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1129 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 128 SPRGRHSCGGGKQTLAVPC 72 SPR + C GKQT+ PC Sbjct: 680 SPRNMYQCQMGKQTMGTPC 698
>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte antigen Ly-37) Length = 344 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 25 PLPRSAIASAPACFSGQGTARVCFPPP 105 PLPR + P C SG G V PPP Sbjct: 320 PLPRPRVQPKPPCGSGDG---VSLPPP 343 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,024,339 Number of Sequences: 219361 Number of extensions: 719458 Number of successful extensions: 2142 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2050 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2139 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
