ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59h10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1317 Score = 147 bits (74), Expect = 3e-32 Identities = 196/236 (83%), Gaps = 3/236 (1%) Strand = Plus / Plus Query: 173 gccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccac 232 |||| |||||||||| |||||| |||||| ||||||| | |||| |||||||| ||| | Sbjct: 145 gccgagtggctgcgcggcgtgcggcggcggatccaccggcaccccgagctggcgttcgag 204 Query: 233 gagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcc 292 ||| |||||| ||| |||||||||||||||||| ||| | |||||||| ||||| Sbjct: 205 gaggtccgcaccagcgagctcgtccgcgccgagctcgacgccatcggcgtcccctaccag 264 Query: 293 tggcccgtcgcccagaccggtgtggtggccacgat---cgtcggcagcggcggcgctggg 349 ||||||||||| | ||||| || || |||||||| || |||| ||||||||| ||| Sbjct: 265 tggcccgtcgcgcgcaccggcgtcgtcgccacgatcgccggcggcggcggcggcgatggc 324 Query: 350 cccgtggtcgcgctccgggcggacatggacgcgctccccttacaggagttggtaga 405 ||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||| Sbjct: 325 cccgtcgtcgcgctccgggcggacatggacgcgctccccgtgcaggaattggtaga 380
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 137 bits (69), Expect = 3e-29 Identities = 182/219 (83%), Gaps = 3/219 (1%) Strand = Plus / Minus Query: 173 gccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccac 232 |||| |||||||||| |||||| |||||| ||||||| | |||| |||||||| ||| | Sbjct: 8369860 gccgagtggctgcgcggcgtgcggcggcggatccaccggcaccccgagctggcgttcgag 8369801 Query: 233 gagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcc 292 ||| |||||| ||| |||||||||||||||||| ||| | |||||||| ||||| Sbjct: 8369800 gaggtccgcaccagcgagctcgtccgcgccgagctcgacgccatcggcgtcccctaccag 8369741 Query: 293 tggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgc---tggg 349 ||||||||||| | ||||| || || |||||||||| |||| ||||||||| ||| Sbjct: 8369740 tggcccgtcgcgcgcaccggcgtcgtcgccacgatcgccggcggcggcggcggcgatggc 8369681 Query: 350 cccgtggtcgcgctccgggcggacatggacgcgctcccc 388 ||||| ||||||||||||||||||||||||||||||||| Sbjct: 8369680 cccgtcgtcgcgctccgggcggacatggacgcgctcccc 8369642 Score = 121 bits (61), Expect = 2e-24 Identities = 181/221 (81%) Strand = Plus / Minus Query: 167 gggttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcc 226 |||||||||| ||||||| | | ||| |||||||||||||||| || |||||||| Sbjct: 8363717 gggttcgccgggtggctgtccgggctgcggcggcgcatccaccagcggcccgagctggcg 8363658 Query: 227 ttccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcc 286 ||||| ||| || |||||| ||| || ||||||||||||||| |||||||||| || Sbjct: 8363657 ttccaggaggtgcggacgagcgagctggtgcgcgccgagctggacgcgatcggcgtcccc 8363598 Query: 287 tactcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgct 346 ||| | ||||||||||| | ||| || || || ||||| |||| |||| ||| |||||| Sbjct: 8363597 tacgcgtggcccgtcgcacggacgggggtcgtcgccaccatcgacggcggcgccggcgcc 8363538 Query: 347 gggcccgtggtcgcgctccgggcggacatggacgcgctccc 387 || ||||| |||||||||||||| ||||||||||||||||| Sbjct: 8363537 ggccccgtcgtcgcgctccgggccgacatggacgcgctccc 8363497 Score = 121 bits (61), Expect = 2e-24 Identities = 186/228 (81%), Gaps = 6/228 (2%) Strand = Plus / Minus Query: 167 gggttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcc 226 |||||||| |||||||||||| || ||| |||| ||||||||| | ||||||||||||| Sbjct: 8357026 gggttcgcggcgtggctgcgcggcctgcggcggagcatccaccggcacccggagctggcg 8356967 Query: 227 ttccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcc 286 ||| | ||| |||||| ||| |||||||||||||||||| ||| ||||||| || || Sbjct: 8356966 ttcgaggaggtccgcaccagcgagctcgtccgcgccgagctcgacgcgatcggggtcccc 8356907 Query: 287 tactcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgct 346 ||| ||||||||||||| ||||| || || ||||| |||| |||| ||| ||||||| Sbjct: 8356906 tacgagtggcccgtcgcccgcaccggcgtcgtcgccaccatcgccggcggcgacggcgct 8356847 Query: 347 ------gggcccgtggtcgcgctccgggcggacatggacgcgctcccc 388 ||| |||| |||||||| ||||||||||||||||||||||| Sbjct: 8356846 ggggccgggaccgtcttcgcgctcagggcggacatggacgcgctcccc 8356799 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 357 tcgcgctccgggcggacatggacgcgctcc 386 |||||||||||| |||||||||||| |||| Sbjct: 8374745 tcgcgctccgggaggacatggacgcactcc 8374716
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 137 bits (69), Expect = 3e-29 Identities = 182/219 (83%), Gaps = 3/219 (1%) Strand = Plus / Minus Query: 173 gccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccac 232 |||| |||||||||| |||||| |||||| ||||||| | |||| |||||||| ||| | Sbjct: 74958 gccgagtggctgcgcggcgtgcggcggcggatccaccggcaccccgagctggcgttcgag 74899 Query: 233 gagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcc 292 ||| |||||| ||| |||||||||||||||||| ||| | |||||||| ||||| Sbjct: 74898 gaggtccgcaccagcgagctcgtccgcgccgagctcgacgccatcggcgtcccctaccag 74839 Query: 293 tggcccgtcgcccagaccggtgtggtggccacgat---cgtcggcagcggcggcgctggg 349 ||||||||||| | ||||| || || |||||||| || |||| ||||||||| ||| Sbjct: 74838 tggcccgtcgcgcgcaccggcgtcgtcgccacgatcgccggcggcggcggcggcgatggc 74779 Query: 350 cccgtggtcgcgctccgggcggacatggacgcgctcccc 388 ||||| ||||||||||||||||||||||||||||||||| Sbjct: 74778 cccgtcgtcgcgctccgggcggacatggacgcgctcccc 74740 Score = 121 bits (61), Expect = 2e-24 Identities = 181/221 (81%) Strand = Plus / Minus Query: 167 gggttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcc 226 |||||||||| ||||||| | | ||| |||||||||||||||| || |||||||| Sbjct: 68815 gggttcgccgggtggctgtccgggctgcggcggcgcatccaccagcggcccgagctggcg 68756 Query: 227 ttccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcc 286 ||||| ||| || |||||| ||| || ||||||||||||||| |||||||||| || Sbjct: 68755 ttccaggaggtgcggacgagcgagctggtgcgcgccgagctggacgcgatcggcgtcccc 68696 Query: 287 tactcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgct 346 ||| | ||||||||||| | ||| || || || ||||| |||| |||| ||| |||||| Sbjct: 68695 tacgcgtggcccgtcgcacggacgggggtcgtcgccaccatcgacggcggcgccggcgcc 68636 Query: 347 gggcccgtggtcgcgctccgggcggacatggacgcgctccc 387 || ||||| |||||||||||||| ||||||||||||||||| Sbjct: 68635 ggccccgtcgtcgcgctccgggccgacatggacgcgctccc 68595 Score = 121 bits (61), Expect = 2e-24 Identities = 186/228 (81%), Gaps = 6/228 (2%) Strand = Plus / Minus Query: 167 gggttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcc 226 |||||||| |||||||||||| || ||| |||| ||||||||| | ||||||||||||| Sbjct: 62124 gggttcgcggcgtggctgcgcggcctgcggcggagcatccaccggcacccggagctggcg 62065 Query: 227 ttccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcc 286 ||| | ||| |||||| ||| |||||||||||||||||| ||| ||||||| || || Sbjct: 62064 ttcgaggaggtccgcaccagcgagctcgtccgcgccgagctcgacgcgatcggggtcccc 62005 Query: 287 tactcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgct 346 ||| ||||||||||||| ||||| || || ||||| |||| |||| ||| ||||||| Sbjct: 62004 tacgagtggcccgtcgcccgcaccggcgtcgtcgccaccatcgccggcggcgacggcgct 61945 Query: 347 ------gggcccgtggtcgcgctccgggcggacatggacgcgctcccc 388 ||| |||| |||||||| ||||||||||||||||||||||| Sbjct: 61944 ggggccgggaccgtcttcgcgctcagggcggacatggacgcgctcccc 61897 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 357 tcgcgctccgggcggacatggacgcgctcc 386 |||||||||||| |||||||||||| |||| Sbjct: 79843 tcgcgctccgggaggacatggacgcactcc 79814
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 137 bits (69), Expect = 3e-29 Identities = 182/219 (83%), Gaps = 3/219 (1%) Strand = Plus / Minus Query: 173 gccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccac 232 |||| |||||||||| |||||| |||||| ||||||| | |||| |||||||| ||| | Sbjct: 1453 gccgagtggctgcgcggcgtgcggcggcggatccaccggcaccccgagctggcgttcgag 1394 Query: 233 gagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcc 292 ||| |||||| ||| |||||||||||||||||| ||| | |||||||| ||||| Sbjct: 1393 gaggtccgcaccagcgagctcgtccgcgccgagctcgacgccatcggcgtcccctaccag 1334 Query: 293 tggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgc---tggg 349 ||||||||||| | ||||| || || |||||||||| |||| ||||||||| ||| Sbjct: 1333 tggcccgtcgcgcgcaccggcgtcgtcgccacgatcgccggcggcggcggcggcgatggc 1274 Query: 350 cccgtggtcgcgctccgggcggacatggacgcgctcccc 388 ||||| ||||||||||||||||||||||||||||||||| Sbjct: 1273 cccgtcgtcgcgctccgggcggacatggacgcgctcccc 1235 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 357 tcgcgctccgggcggacatggacgcgctcc 386 |||||||||||| |||||||||||| |||| Sbjct: 6338 tcgcgctccgggaggacatggacgcactcc 6309
>ref|NM_186847.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1368 Score = 131 bits (66), Expect = 2e-27 Identities = 200/245 (81%), Gaps = 6/245 (2%) Strand = Plus / Plus Query: 167 gggttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcc 226 |||||||| |||||||||||| || ||| |||| ||||||||| | ||||||||||||| Sbjct: 181 gggttcgcggcgtggctgcgcggcctgcggcggagcatccaccggcacccggagctggcg 240 Query: 227 ttccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcc 286 ||| | ||| |||||| ||| |||||||||||||||||| ||| ||||||| || || Sbjct: 241 ttcgaggaggtccgcaccagcgagctcgtccgcgccgagctcgacgcgatcggggtcccc 300 Query: 287 tactcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgct 346 ||| ||||||||||||| ||||| || || ||||| |||| |||| ||| ||||||| Sbjct: 301 tacgagtggcccgtcgcccgcaccggcgtcgtcgccaccatcgccggcggcgacggcgct 360 Query: 347 ------gggcccgtggtcgcgctccgggcggacatggacgcgctccccttacaggagttg 400 ||| |||| |||||||| ||||||||||||||||||||||| | ||||| ||| Sbjct: 361 ggggccgggaccgtcttcgcgctcagggcggacatggacgcgctccccctgcaggaattg 420 Query: 401 gtaga 405 ||||| Sbjct: 421 gtaga 425
>ref|XM_470344.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1345 Score = 121 bits (61), Expect = 2e-24 Identities = 193/237 (81%) Strand = Plus / Plus Query: 169 gttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcctt 228 |||||| | |||||||||| || ||| || |||||||||||| |||||||||| || || Sbjct: 154 gttcgcggggtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgtt 213 Query: 229 ccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtccta 288 ||| ||| ||||||| ||| ||||||| ||||| ||||||||| || ||||||| | || Sbjct: 214 ccaggagcaccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgta 273 Query: 289 ctcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgg 348 | ||||||||||| |||||||| || || ||||| |||||||| || |||| | || Sbjct: 274 cgtgtggcccgtcgcgcagaccggcgtcgttgccaccgtcgtcggcgccgccggccccgg 333 Query: 349 gcccgtggtcgcgctccgggcggacatggacgcgctccccttacaggagttggtaga 405 |||||| ||| |||||| || |||||||||||||||||| | ||||| ||||||| Sbjct: 334 ccccgtgttcgggctccgcgccgacatggacgcgctccccatccaggaaatggtaga 390
>ref|NM_186848.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1335 Score = 121 bits (61), Expect = 2e-24 Identities = 181/221 (81%) Strand = Plus / Plus Query: 167 gggttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcc 226 |||||||||| ||||||| | | ||| |||||||||||||||| || |||||||| Sbjct: 154 gggttcgccgggtggctgtccgggctgcggcggcgcatccaccagcggcccgagctggcg 213 Query: 227 ttccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcc 286 ||||| ||| || |||||| ||| || ||||||||||||||| |||||||||| || Sbjct: 214 ttccaggaggtgcggacgagcgagctggtgcgcgccgagctggacgcgatcggcgtcccc 273 Query: 287 tactcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgct 346 ||| | ||||||||||| | ||| || || || ||||| |||| |||| ||| |||||| Sbjct: 274 tacgcgtggcccgtcgcacggacgggggtcgtcgccaccatcgacggcggcgccggcgcc 333 Query: 347 gggcccgtggtcgcgctccgggcggacatggacgcgctccc 387 || ||||| |||||||||||||| ||||||||||||||||| Sbjct: 334 ggccccgtcgtcgcgctccgggccgacatggacgcgctccc 374
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 7e-24 Identities = 180/220 (81%) Strand = Plus / Plus Query: 169 gttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcctt 228 |||||| | |||||||||| || ||| || |||||||||||| |||||||||| || || Sbjct: 34856655 gttcgcggggtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgtt 34856714 Query: 229 ccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtccta 288 ||| ||| ||||||| ||| ||||||| ||||| ||||||||| || ||||||| | || Sbjct: 34856715 ccaggagcaccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgta 34856774 Query: 289 ctcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgg 348 | ||||||||||| |||||||| || || ||||| |||||||| || |||| | || Sbjct: 34856775 cgtgtggcccgtcgcgcagaccggcgtcgttgccaccgtcgtcggcgccgccggccccgg 34856834 Query: 349 gcccgtggtcgcgctccgggcggacatggacgcgctcccc 388 |||||| ||| |||||| || |||||||||||||||||| Sbjct: 34856835 ccccgtgttcgggctccgcgccgacatggacgcgctcccc 34856874 Score = 101 bits (51), Expect = 2e-18 Identities = 171/211 (81%) Strand = Plus / Plus Query: 178 gtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccacgagta 237 |||||||||| || ||| || |||||||||||| |||||||||| || ||||| ||| | Sbjct: 34860879 gtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgttccaggagca 34860938 Query: 238 ccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcctggcc 297 |||||| ||| ||||||| ||||| ||||||||| || ||||||| | ||| ||||| Sbjct: 34860939 ccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgtacgtgtggcc 34860998 Query: 298 cgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgggcccgtggt 357 | |||| || ||||| || || ||||| ||| |||| | |||| |||| |||||| | Sbjct: 34860999 catcgcgcaaaccggcgtcgtcgccaccgtcgccggcgctgccggccctggccccgtgtt 34861058 Query: 358 cgcgctccgggcggacatggacgcgctcccc 388 ||||||||| || |||||||||||||||||| Sbjct: 34861059 cgcgctccgcgccgacatggacgcgctcccc 34861089
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 119 bits (60), Expect = 7e-24 Identities = 180/220 (81%) Strand = Plus / Minus Query: 169 gttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcctt 228 |||||| | |||||||||| || ||| || |||||||||||| |||||||||| || || Sbjct: 5995 gttcgcggggtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgtt 5936 Query: 229 ccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtccta 288 ||| ||| ||||||| ||| ||||||| ||||| ||||||||| || ||||||| | || Sbjct: 5935 ccaggagcaccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgta 5876 Query: 289 ctcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgg 348 | ||||||||||| |||||||| || || ||||| |||||||| || |||| | || Sbjct: 5875 cgtgtggcccgtcgcgcagaccggcgtcgttgccaccgtcgtcggcgccgccggccccgg 5816 Query: 349 gcccgtggtcgcgctccgggcggacatggacgcgctcccc 388 |||||| ||| |||||| || |||||||||||||||||| Sbjct: 5815 ccccgtgttcgggctccgcgccgacatggacgcgctcccc 5776 Score = 101 bits (51), Expect = 2e-18 Identities = 171/211 (81%) Strand = Plus / Minus Query: 178 gtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccacgagta 237 |||||||||| || ||| || |||||||||||| |||||||||| || ||||| ||| | Sbjct: 1771 gtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgttccaggagca 1712 Query: 238 ccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcctggcc 297 |||||| ||| ||||||| ||||| ||||||||| || ||||||| | ||| ||||| Sbjct: 1711 ccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgtacgtgtggcc 1652 Query: 298 cgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgggcccgtggt 357 | |||| || ||||| || || ||||| ||| |||| | |||| |||| |||||| | Sbjct: 1651 catcgcgcaaaccggcgtcgtcgccaccgtcgccggcgctgccggccctggccccgtgtt 1592 Query: 358 cgcgctccgggcggacatggacgcgctcccc 388 ||||||||| || |||||||||||||||||| Sbjct: 1591 cgcgctccgcgccgacatggacgcgctcccc 1561
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 7e-24 Identities = 180/220 (81%) Strand = Plus / Plus Query: 169 gttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcctt 228 |||||| | |||||||||| || ||| || |||||||||||| |||||||||| || || Sbjct: 34946727 gttcgcggggtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgtt 34946786 Query: 229 ccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtccta 288 ||| ||| ||||||| ||| ||||||| ||||| ||||||||| || ||||||| | || Sbjct: 34946787 ccaggagcaccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgta 34946846 Query: 289 ctcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgg 348 | ||||||||||| |||||||| || || ||||| |||||||| || |||| | || Sbjct: 34946847 cgtgtggcccgtcgcgcagaccggcgtcgttgccaccgtcgtcggcgccgccggccccgg 34946906 Query: 349 gcccgtggtcgcgctccgggcggacatggacgcgctcccc 388 |||||| ||| |||||| || |||||||||||||||||| Sbjct: 34946907 ccccgtgttcgggctccgcgccgacatggacgcgctcccc 34946946 Score = 101 bits (51), Expect = 2e-18 Identities = 171/211 (81%) Strand = Plus / Plus Query: 178 gtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccacgagta 237 |||||||||| || ||| || |||||||||||| |||||||||| || ||||| ||| | Sbjct: 34950951 gtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgttccaggagca 34951010 Query: 238 ccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcctggcc 297 |||||| ||| ||||||| ||||| ||||||||| || ||||||| | ||| ||||| Sbjct: 34951011 ccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgtacgtgtggcc 34951070 Query: 298 cgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgggcccgtggt 357 | |||| || ||||| || || ||||| ||| |||| | |||| |||| |||||| | Sbjct: 34951071 catcgcgcaaaccggcgtcgtcgccaccgtcgccggcgctgccggccctggccccgtgtt 34951130 Query: 358 cgcgctccgggcggacatggacgcgctcccc 388 ||||||||| || |||||||||||||||||| Sbjct: 34951131 cgcgctccgcgccgacatggacgcgctcccc 34951161
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 119 bits (60), Expect = 7e-24 Identities = 180/220 (81%) Strand = Plus / Minus Query: 169 gttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcctt 228 |||||| | |||||||||| || ||| || |||||||||||| |||||||||| || || Sbjct: 158825 gttcgcggggtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgtt 158766 Query: 229 ccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtccta 288 ||| ||| ||||||| ||| ||||||| ||||| ||||||||| || ||||||| | || Sbjct: 158765 ccaggagcaccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgta 158706 Query: 289 ctcctggcccgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgg 348 | ||||||||||| |||||||| || || ||||| |||||||| || |||| | || Sbjct: 158705 cgtgtggcccgtcgcgcagaccggcgtcgttgccaccgtcgtcggcgccgccggccccgg 158646 Query: 349 gcccgtggtcgcgctccgggcggacatggacgcgctcccc 388 |||||| ||| |||||| || |||||||||||||||||| Sbjct: 158645 ccccgtgttcgggctccgcgccgacatggacgcgctcccc 158606 Score = 101 bits (51), Expect = 2e-18 Identities = 171/211 (81%) Strand = Plus / Minus Query: 178 gtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccacgagta 237 |||||||||| || ||| || |||||||||||| |||||||||| || ||||| ||| | Sbjct: 154601 gtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgttccaggagca 154542 Query: 238 ccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcctggcc 297 |||||| ||| ||||||| ||||| ||||||||| || ||||||| | ||| ||||| Sbjct: 154541 ccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgtacgtgtggcc 154482 Query: 298 cgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgggcccgtggt 357 | |||| || ||||| || || ||||| ||| |||| | |||| |||| |||||| | Sbjct: 154481 catcgcgcaaaccggcgtcgtcgccaccgtcgccggcgctgccggccctggccccgtgtt 154422 Query: 358 cgcgctccgggcggacatggacgcgctcccc 388 ||||||||| || |||||||||||||||||| Sbjct: 154421 cgcgctccgcgccgacatggacgcgctcccc 154391
>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence Length = 138518 Score = 107 bits (54), Expect = 3e-20 Identities = 123/146 (84%) Strand = Plus / Plus Query: 167 gggttcgccgcgtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggcc 226 ||||||||||||||||| ||| |||||| ||| |||||||||||| || |||||||| Sbjct: 66593 gggttcgccgcgtggctccgcggcgtgcggcgccgcatccaccagcggcccgagctggcg 66652 Query: 227 ttccacgagtaccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcc 286 ||||| ||| ||||||| ||| |||||| | |||||||| ||| | ||||||||| || Sbjct: 66653 ttccaggagcaccgcaccagcgagctcgtgcaagccgagctcgacgccatcggcgtgccc 66712 Query: 287 tactcctggcccgtcgcccagaccgg 312 ||| | |||||||||||||||||||| Sbjct: 66713 tacacgtggcccgtcgcccagaccgg 66738 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 366 gggcggacatggacgcgctccccttacagg 395 |||| |||||||||||||||||| |||||| Sbjct: 66773 gggccgacatggacgcgctccccatacagg 66802
>ref|XM_470345.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1245 Score = 103 bits (52), Expect = 4e-19 Identities = 184/228 (80%) Strand = Plus / Plus Query: 178 gtggctgcgcagcgtgcagcggcgcatccaccagtacccggagctggccttccacgagta 237 |||||||||| || ||| || |||||||||||| |||||||||| || ||||| ||| | Sbjct: 60 gtggctgcgcggcctgcgccgccgcatccaccagcacccggagctcgcgttccaggagca 119 Query: 238 ccgcacgagctcgctcgtccgcgccgagctggacacgatcggcgtgtcctactcctggcc 297 |||||| ||| ||||||| ||||| ||||||||| || ||||||| | ||| ||||| Sbjct: 120 ccgcaccagcgcgctcgtgcgcgcggagctggacgcgctcggcgtcgcgtacgtgtggcc 179 Query: 298 cgtcgcccagaccggtgtggtggccacgatcgtcggcagcggcggcgctgggcccgtggt 357 | |||| || ||||| || || ||||| ||| |||| | |||| |||| |||||| | Sbjct: 180 catcgcgcaaaccggcgtcgtcgccaccgtcgccggcgctgccggccctggccccgtgtt 239 Query: 358 cgcgctccgggcggacatggacgcgctccccttacaggagttggtaga 405 ||||||||| || |||||||||||||||||| | ||||| ||||||| Sbjct: 240 cgcgctccgcgccgacatggacgcgctccccatccaggaaatggtaga 287
>gb|AY108775.1| Zea mays PCO107762 mRNA sequence Length = 1196 Score = 67.9 bits (34), Expect = 2e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 336 gcggcggcgctgggcccgtggtcgcgctccgggcggacatggacgcgctccccttacagg 395 ||||| ||| ||| ||||| ||||||||||| || |||||||||||||| ||||| |||| Sbjct: 30 gcggcagcgatggccccgtcgtcgcgctccgagccgacatggacgcgctacccttgcagg 89 Query: 396 agttggtaga 405 | |||||||| Sbjct: 90 aattggtaga 99
>ref|NM_193506.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1329 Score = 63.9 bits (32), Expect = 4e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 356 gtcgcgctccgggcggacatggacgcgctccc 387 |||||||||||||||||||||||||||||||| Sbjct: 313 gtcgcgctccgggcggacatggacgcgctccc 344
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 4e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 356 gtcgcgctccgggcggacatggacgcgctccc 387 |||||||||||||||||||||||||||||||| Sbjct: 21266537 gtcgcgctccgggcggacatggacgcgctccc 21266506
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 63.9 bits (32), Expect = 4e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 356 gtcgcgctccgggcggacatggacgcgctccc 387 |||||||||||||||||||||||||||||||| Sbjct: 164046 gtcgcgctccgggcggacatggacgcgctccc 164015
>gb|AY187620.1| Oryza sativa (indica cultivar-group) IAA-amino acid hydrolase (IAR) mRNA, complete cds Length = 1434 Score = 63.9 bits (32), Expect = 4e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 356 gtcgcgctccgggcggacatggacgcgctccc 387 |||||||||||||||||||||||||||||||| Sbjct: 385 gtcgcgctccgggcggacatggacgcgctccc 416
>dbj|AK105974.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F05, full insert sequence Length = 1542 Score = 63.9 bits (32), Expect = 4e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 356 gtcgcgctccgggcggacatggacgcgctccc 387 |||||||||||||||||||||||||||||||| Sbjct: 336 gtcgcgctccgggcggacatggacgcgctccc 367
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 353 gtggtcgcgctccgggcggacatggacgcgct 384 ||||||||||||||||| |||||||||||||| Sbjct: 28452902 gtggtcgcgctccgggccgacatggacgcgct 28452871 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 cgtcggcagcggcggcgctggg 349 |||||||||||||||||||||| Sbjct: 16371849 cgtcggcagcggcggcgctggg 16371828
>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03 Length = 166128 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 353 gtggtcgcgctccgggcggacatggacgcgct 384 ||||||||||||||||| |||||||||||||| Sbjct: 59935 gtggtcgcgctccgggccgacatggacgcgct 59904
>dbj|AK107208.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B11, full insert sequence Length = 2043 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 353 gtggtcgcgctccgggcggacatggacgcgct 384 ||||||||||||||||| |||||||||||||| Sbjct: 574 gtggtcgcgctccgggccgacatggacgcgct 605
>gb|AY701776.1| Triticum aestivum auxin amidohydrolase mRNA, complete cds Length = 1788 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Plus Query: 356 gtcgcgctccgggcggacatggacgcgctccc 387 |||||||| ||||| ||||||||||||||||| Sbjct: 382 gtcgcgcttcgggccgacatggacgcgctccc 413
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 46.1 bits (23), Expect = 0.088 Identities = 35/39 (89%) Strand = Plus / Minus Query: 350 cccgtggtcgcgctccgggcggacatggacgcgctcccc 388 ||||| ||||||||||| || ||||||||||| |||||| Sbjct: 62271 cccgtcgtcgcgctccgcgctgacatggacgccctcccc 62233
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.088 Identities = 35/39 (89%) Strand = Plus / Plus Query: 350 cccgtggtcgcgctccgggcggacatggacgcgctcccc 388 ||||| ||||||||||| || ||||||||||| |||||| Sbjct: 2560133 cccgtcgtcgcgctccgcgctgacatggacgccctcccc 2560171
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.088 Identities = 35/39 (89%) Strand = Plus / Plus Query: 350 cccgtggtcgcgctccgggcggacatggacgcgctcccc 388 ||||| ||||||||||| || ||||||||||| |||||| Sbjct: 2569164 cccgtcgtcgcgctccgcgctgacatggacgccctcccc 2569202
>gb|M25638.1|RATNFL Rat smallest neurofilament protein (NF-L) mRNA, partial cds Length = 861 Score = 46.1 bits (23), Expect = 0.088 Identities = 26/27 (96%) Strand = Plus / Plus Query: 244 gagctcgctcgtccgcgccgagctgga 270 ||||||||||| ||||||||||||||| Sbjct: 12 gagctcgctcgcccgcgccgagctgga 38
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 171 tcgccgcgtggctgcgcagcgt 192 |||||||||||||||||||||| Sbjct: 1142740 tcgccgcgtggctgcgcagcgt 1142719
>ref|NM_186851.1| Oryza sativa (japonica cultivar-group), mRNA Length = 291 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 357 tcgcgctccgggcggacatggacgcgctcc 386 |||||||||||| |||||||||||| |||| Sbjct: 194 tcgcgctccgggaggacatggacgcactcc 223
>dbj|AP004012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1568_D07 Length = 83857 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 cgtcggcagcggcggcgctggg 349 |||||||||||||||||||||| Sbjct: 66950 cgtcggcagcggcggcgctggg 66929
>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0008F02 Length = 139655 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 328 cgtcggcagcggcggcgctggg 349 |||||||||||||||||||||| Sbjct: 48412 cgtcggcagcggcggcgctggg 48391
>gb|BT018713.1| Zea mays clone EL01N0516G04.d mRNA sequence Length = 1620 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 368 gcggacatggacgcgctccccttacagga 396 ||||||||||||||||| ||||| ||||| Sbjct: 382 gcggacatggacgcgctgcccttgcagga 410
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 325 gatcgtcggcagcggcggcgc 345 ||||||||||||||||||||| Sbjct: 5808025 gatcgtcggcagcggcggcgc 5808005
>gb|AY583444.1| Uncultured bacterium clone DGGE band HS2G nitrite reductase (nirK) gene, partial cds Length = 410 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 tggcccgtcgcccagaccggt 313 ||||||||||||||||||||| Sbjct: 281 tggcccgtcgcccagaccggt 261
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 131 ccggcgggtgacttcctggatgcgg 155 ||||||| ||||||||||||||||| Sbjct: 988239 ccggcggatgacttcctggatgcgg 988263
>gb|DQ094188.2| Toxoplasma gondii ATP-binding cassette protein subfamily B member 1 (ABC.B1) gene, complete cds Length = 24600 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 acgatcgtcggcagcggcggc 343 ||||||||||||||||||||| Sbjct: 22703 acgatcgtcggcagcggcggc 22723
>gb|AE012378.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 286 of 460 of the complete genome Length = 10947 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 cgtggctgcgcagcgtgcagc 197 ||||||||||||||||||||| Sbjct: 10515 cgtggctgcgcagcgtgcagc 10535
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 cgtggctgcgcagcgtgcagc 197 ||||||||||||||||||||| Sbjct: 1751379 cgtggctgcgcagcgtgcagc 1751359
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 356 gtcgcgctccgggcggacatggacgcgctcccc 388 ||||||||||| || ||||||||||| |||||| Sbjct: 14474805 gtcgcgctccgcgctgacatggacgccctcccc 14474837
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 tggtggccacgatcgtcggca 335 ||||||||||||||||||||| Sbjct: 836971 tggtggccacgatcgtcggca 836951
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 356 gtcgcgctccgggcggacatggacgcgctcccc 388 ||||||||||| || ||||||||||| |||||| Sbjct: 74370 gtcgcgctccgcgctgacatggacgccctcccc 74402
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 cggcagcggcggcgctgggc 350 |||||||||||||||||||| Sbjct: 2112075 cggcagcggcggcgctgggc 2112094
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tcgccgcgtggctgcgcagc 190 |||||||||||||||||||| Sbjct: 532665 tcgccgcgtggctgcgcagc 532646
>ref|XM_361039.1| Magnaporthe grisea 70-15 hypothetical protein (MG03582.4) partial mRNA Length = 1386 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ctgggcccgtggtcgcgctc 364 |||||||||||||||||||| Sbjct: 752 ctgggcccgtggtcgcgctc 733
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tcgccgcgtggctgcgcagc 190 |||||||||||||||||||| Sbjct: 3242413 tcgccgcgtggctgcgcagc 3242432
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggccttccacgagtaccgca 242 |||||||||||||||||||| Sbjct: 13043 ggccttccacgagtaccgca 13062
>ref|XM_534503.2| PREDICTED: Canis familiaris similar to START domain containing 13 isoform gamma, transcript variant 1 (LOC477311), mRNA Length = 3009 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 gccacgatcgtcggcagcggcggc 343 |||||| ||||||||||||||||| Sbjct: 337 gccacgctcgtcggcagcggcggc 360
>ref|XM_853492.1| PREDICTED: Canis familiaris similar to START domain containing 13 isoform gamma, transcript variant 4 (LOC477311), mRNA Length = 3138 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 gccacgatcgtcggcagcggcggc 343 |||||| ||||||||||||||||| Sbjct: 751 gccacgctcgtcggcagcggcggc 774
>ref|XM_844266.1| PREDICTED: Canis familiaris similar to START domain containing 13 isoform gamma, transcript variant 3 (LOC477311), mRNA Length = 3423 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 gccacgatcgtcggcagcggcggc 343 |||||| ||||||||||||||||| Sbjct: 751 gccacgctcgtcggcagcggcggc 774
>ref|XM_384635.1| Gibberella zeae PH-1 chromosome 2 predicted protein (FG04459.1) partial mRNA Length = 1437 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gtcggcagcggcggcgctgg 348 |||||||||||||||||||| Sbjct: 393 gtcggcagcggcggcgctgg 374
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 gtcggcagcggcggcgctgg 348 |||||||||||||||||||| Sbjct: 4371934 gtcggcagcggcggcgctgg 4371953
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tcgccgcgtggctgcgcagc 190 |||||||||||||||||||| Sbjct: 2972236 tcgccgcgtggctgcgcagc 2972255
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cgccgagctggacacgatcg 278 |||||||||||||||||||| Sbjct: 281818 cgccgagctggacacgatcg 281799
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 agaccggtgtggtggccacg 325 |||||||||||||||||||| Sbjct: 200984 agaccggtgtggtggccacg 201003
>gb|AE012034.1| Xanthomonas axonopodis pv. citri str. 306, section 412 of 469 of the complete genome Length = 11026 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 357 tcgcgctccgggcggacatggacgcgct 384 ||||||| || ||||||||||||||||| Sbjct: 2471 tcgcgctgcgtgcggacatggacgcgct 2444
>gb|DQ337862.1| Uncultured bacterium clone Psedi_nirS-24 NirS (nirS) gene, partial cds Length = 421 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tggcccgtcgcccagaccgg 312 |||||||||||||||||||| Sbjct: 280 tggcccgtcgcccagaccgg 261
>dbj|AB162303.1| Uncultured bacterium nirS gene for nitrite reductase, partial cds, clone:S-Z47 Length = 785 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tggcccgtcgcccagaccgg 312 |||||||||||||||||||| Sbjct: 374 tggcccgtcgcccagaccgg 355
>dbj|AB162230.1| Uncultured bacterium nirS gene for nitrite reductase, partial cds, clone: S-A1 Length = 783 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tggcccgtcgcccagaccgg 312 |||||||||||||||||||| Sbjct: 374 tggcccgtcgcccagaccgg 355
>dbj|AB164144.1| Uncultured bacterium nirS gene for nitrite reductase, clone: NR2-87S27 Length = 816 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tggcccgtcgcccagaccgg 312 |||||||||||||||||||| Sbjct: 433 tggcccgtcgcccagaccgg 414
>dbj|AB164143.1| Uncultured bacterium nirS gene for nitrite reductase, clone: NR2-87S25 Length = 700 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tggcccgtcgcccagaccgg 312 |||||||||||||||||||| Sbjct: 433 tggcccgtcgcccagaccgg 414
>dbj|AB164136.1| Uncultured bacterium nirS gene for nitrite reductase, clone: NR2-87S2 Length = 805 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 tggcccgtcgcccagaccgg 312 |||||||||||||||||||| Sbjct: 433 tggcccgtcgcccagaccgg 414
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gctcgtccgcgccgagctgg 269 |||||||||||||||||||| Sbjct: 2283071 gctcgtccgcgccgagctgg 2283052
>gb|AF113605.1|AF113605 Streptomyces coelicolor propionyl-CoA carboxylase complex B subunit (pccB) gene, complete cds Length = 1593 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 cgccgagctggacacgatcg 278 |||||||||||||||||||| Sbjct: 843 cgccgagctggacacgatcg 862
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tcgccgcgtggctgcgcagc 190 |||||||||||||||||||| Sbjct: 1900236 tcgccgcgtggctgcgcagc 1900217
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 357 tcgcgctccgggcggacatggacgcgct 384 ||||||| ||||| |||||||||||||| Sbjct: 3806152 tcgcgctgcgggccgacatggacgcgct 3806125
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 cgggcggacatggacgcgctcccc 388 ||||||||||||||||| |||||| Sbjct: 980803 cgggcggacatggacgccctcccc 980826
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 350 cccgtggtcgcgctccgggcggacatggacgcgctccccttacaggag 397 |||||||| || || ||||||||||| |||||||| ||| | |||||| Sbjct: 1279582 cccgtggtggccctgcgggcggacatcgacgcgctgcccattcaggag 1279629
>emb|AL591584.14| Mouse DNA sequence from clone RP23-335N12 on chromosome 2, complete sequence Length = 177754 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cctactcctggcccgtcgcc 304 |||||||||||||||||||| Sbjct: 138110 cctactcctggcccgtcgcc 138129 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,189,626 Number of Sequences: 3902068 Number of extensions: 2189626 Number of successful extensions: 54263 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52229 Number of HSP's gapped (non-prelim): 2025 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
