ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart59h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative... 167 4e-38
2gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III ... 167 4e-38
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
4gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds 167 4e-38
5gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 167 4e-38
6dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
7dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 167 4e-38
9dbj|AB035668.1| Tulipa bakeri tbc1 mRNA for bulb chitinase-1, co... 48 0.023
10ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative... 42 1.4
11gb|AC119426.2| Homo sapiens chromosome 1 clone RP11-203A2, compl... 42 1.4
12gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica culti... 42 1.4
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
14gb|AE004591.1| Pseudomonas aeruginosa PAO1, section 152 of 529 o... 42 1.4
15gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III ch... 42 1.4
16dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
18dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
19dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
20dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
21emb|CR376854.12| Zebrafish DNA sequence from clone DKEY-197C15 i... 42 1.4
22ref|NM_121779.1| Arabidopsis thaliana ATP binding / ATPase/ nucl... 40 5.7
23gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.7
24gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.7
25gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosom... 40 5.7
26gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosom... 40 5.7
27emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.7
28emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.7
29gb|AF451898.1| Heliothis zea virus 1, complete genome 40 5.7
30dbj|AB006706.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.7
31gb|AC107746.9| Mus musculus chromosome 1, clone RP23-311K2, comp... 40 5.7
32gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.7 
>ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           RCB4 (OSJNBa0032I20.7), mRNA
          Length = 924

 Score =  167 bits (84), Expect = 4e-38
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                       
Query: 161 aactctaacctcttccgcgactacntcggcgccctttacaacggcgtcaggttcgcggac 220
           ||||| ||||||||||| |||||| |||||||| | | ||||||||| | |||| | |||
Sbjct: 79  aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 138

                                                                       
Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280
           ||||| ||||| |||   | ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 139 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 198

                                                                       
Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340
           ||||  ||| | || ||||||||||||||||||  ||||||| ||||||||||| |||||
Sbjct: 199 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 258

                      
Query: 341 gtgctcacccc 351
           |||||||||||
Sbjct: 259 gtgctcacccc 269
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>gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III chitinase RCB4
           (Rcb4) mRNA, complete cds
          Length = 1158

 Score =  167 bits (84), Expect = 4e-38
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                       
Query: 161 aactctaacctcttccgcgactacntcggcgccctttacaacggcgtcaggttcgcggac 220
           ||||| ||||||||||| |||||| |||||||| | | ||||||||| | |||| | |||
Sbjct: 131 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 190

                                                                       
Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280
           ||||| ||||| |||   | ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 191 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 250

                                                                       
Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340
           ||||  ||| | || ||||||||||||||||||  ||||||| ||||||||||| |||||
Sbjct: 251 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 310

                      
Query: 341 gtgctcacccc 351
           |||||||||||
Sbjct: 311 gtgctcacccc 321
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  167 bits (84), Expect = 4e-38
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                            
Query: 161      aactctaacctcttccgcgactacntcggcgccctttacaacggcgtcaggttcgcggac 220
                ||||| ||||||||||| |||||| |||||||| | | ||||||||| | |||| | |||
Sbjct: 14044922 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 14044981

                                                                            
Query: 221      gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280
                ||||| ||||| |||   | ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 14044982 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 14045041

                                                                            
Query: 281      accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340
                ||||  ||| | || ||||||||||||||||||  ||||||| ||||||||||| |||||
Sbjct: 14045042 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 14045101

                           
Query: 341      gtgctcacccc 351
                |||||||||||
Sbjct: 14045102 gtgctcacccc 14045112



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 249      acttcatcctcgcgttcgtcatcgactac 277
                ||||||||||||| |||| ||||||||||
Sbjct: 14076023 acttcatcctcgccttcgccatcgactac 14076051
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>gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds
          Length = 941

 Score =  167 bits (84), Expect = 4e-38
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                       
Query: 161 aactctaacctcttccgcgactacntcggcgccctttacaacggcgtcaggttcgcggac 220
           ||||| ||||||||||| |||||| |||||||| | | ||||||||| | |||| | |||
Sbjct: 4   aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 63

                                                                       
Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280
           ||||| ||||| |||   | ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 64  gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 123

                                                                       
Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340
           ||||  ||| | || ||||||||||||||||||  ||||||| ||||||||||| |||||
Sbjct: 124 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 183

                      
Query: 341 gtgctcacccc 351
           |||||||||||
Sbjct: 184 gtgctcacccc 194
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>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score =  167 bits (84), Expect = 4e-38
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                         
Query: 161   aactctaacctcttccgcgactacntcggcgccctttacaacggcgtcaggttcgcggac 220
             ||||| ||||||||||| |||||| |||||||| | | ||||||||| | |||| | |||
Sbjct: 61051 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 61110

                                                                         
Query: 221   gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280
             ||||| ||||| |||   | ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 61111 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 61170

                                                                         
Query: 281   accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340
             ||||  ||| | || ||||||||||||||||||  ||||||| ||||||||||| |||||
Sbjct: 61171 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 61230

                        
Query: 341   gtgctcacccc 351
             |||||||||||
Sbjct: 61231 gtgctcacccc 61241



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 249   acttcatcctcgcgttcgtcatcgactac 277
             ||||||||||||| |||| ||||||||||
Sbjct: 92152 acttcatcctcgccttcgccatcgactac 92180
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>dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093F02, full
           insert sequence
          Length = 1211

 Score =  167 bits (84), Expect = 4e-38
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                       
Query: 161 aactctaacctcttccgcgactacntcggcgccctttacaacggcgtcaggttcgcggac 220
           ||||| ||||||||||| |||||| |||||||| | | ||||||||| | |||| | |||
Sbjct: 132 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 191

                                                                       
Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280
           ||||| ||||| |||   | ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 192 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 251

                                                                       
Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340
           ||||  ||| | || ||||||||||||||||||  ||||||| ||||||||||| |||||
Sbjct: 252 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 311

                      
Query: 341 gtgctcacccc 351
           |||||||||||
Sbjct: 312 gtgctcacccc 322
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>dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E04, full
           insert sequence
          Length = 1096

 Score =  167 bits (84), Expect = 4e-38
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                       
Query: 161 aactctaacctcttccgcgactacntcggcgccctttacaacggcgtcaggttcgcggac 220
           ||||| ||||||||||| |||||| |||||||| | | ||||||||| | |||| | |||
Sbjct: 17  aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 76

                                                                       
Query: 221 gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280
           ||||| ||||| |||   | ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 77  gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 136

                                                                       
Query: 281 accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340
           ||||  ||| | || ||||||||||||||||||  ||||||| ||||||||||| |||||
Sbjct: 137 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 196

                      
Query: 341 gtgctcacccc 351
           |||||||||||
Sbjct: 197 gtgctcacccc 207
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  167 bits (84), Expect = 4e-38
 Identities = 164/191 (85%)
 Strand = Plus / Plus

                                                                            
Query: 161      aactctaacctcttccgcgactacntcggcgccctttacaacggcgtcaggttcgcggac 220
                ||||| ||||||||||| |||||| |||||||| | | ||||||||| | |||| | |||
Sbjct: 14053164 aactccaacctcttccgggactacatcggcgccatcttcaacggcgtgaagttcaccgac 14053223

                                                                            
Query: 221      gtgccgatcaacccgcgcgcccggttcgacttcatcctcgcgttcgtcatcgactacacc 280
                ||||| ||||| |||   | ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 14053224 gtgccaatcaatccgaaagtccggttcgacttcatcctcgccttcatcatcgactacacc 14053283

                                                                            
Query: 281      accgccacggagcccccgaccccgaccaacggccggttcaacgtcttctggcaggacacg 340
                ||||  ||| | || ||||||||||||||||||  ||||||| ||||||||||| |||||
Sbjct: 14053284 accgagacgaacccgccgaccccgaccaacggcaagttcaacatcttctggcagaacacg 14053343

                           
Query: 341      gtgctcacccc 351
                |||||||||||
Sbjct: 14053344 gtgctcacccc 14053354



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 249      acttcatcctcgcgttcgtcatcgactac 277
                ||||||||||||| |||| ||||||||||
Sbjct: 14084265 acttcatcctcgccttcgccatcgactac 14084293
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>dbj|AB035668.1| Tulipa bakeri tbc1 mRNA for bulb chitinase-1, complete cds
          Length = 1106

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 249 acttcatcctcgcgttcgtcatcgactacacc 280
           ||||||||||||| |||| |||||||||||||
Sbjct: 175 acttcatcctcgctttcgccatcgactacacc 206
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>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           (OSJNBa0032I20.10), mRNA
          Length = 861

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 249 acttcatcctcgcgttcgtcatcgactac 277
           ||||||||||||| |||| ||||||||||
Sbjct: 95  acttcatcctcgccttcgccatcgactac 123
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>gb|AC119426.2| Homo sapiens chromosome 1 clone RP11-203A2, complete sequence
          Length = 52339

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 29    accaaacaaaagcaggagtaacaaa 53
             ||||||||||||||| |||||||||
Sbjct: 12063 accaaacaaaagcagtagtaacaaa 12087
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>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare Clone OSJNBa0061K21 From Chromosome 10,
             complete sequence
          Length = 112721

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 249   acttcatcctcgcgttcgtcatcgactac 277
             ||||||||||||| |||| ||||||||||
Sbjct: 15661 acttcatcctcgccttcgccatcgactac 15689
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 279     ccaccgccacggagcccccgaccccgacc 307
               ||||||||| ||| |||||||||||||||
Sbjct: 8216685 ccaccgccaaggaacccccgaccccgacc 8216713
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>gb|AE004591.1| Pseudomonas aeruginosa PAO1, section 152 of 529 of the complete
            genome
          Length = 11040

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 406  cctcggcggcgccacggtcaa 426
            |||||||||||||||||||||
Sbjct: 9741 cctcggcggcgccacggtcaa 9761
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>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene,
           complete cds
          Length = 1038

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 249 acttcatcctcgcgttcgtcatcgactac 277
           ||||||||||||| |||| ||||||||||
Sbjct: 146 acttcatcctcgccttcgccatcgactac 174
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>dbj|AP005586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0450F09
          Length = 148752

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 279   ccaccgccacggagcccccgaccccgacc 307
             ||||||||| ||| |||||||||||||||
Sbjct: 40607 ccaccgccaaggaacccccgaccccgacc 40635
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>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full
           insert sequence
          Length = 989

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 249 acttcatcctcgcgttcgtcatcgactac 277
           ||||||||||||| |||| ||||||||||
Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
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>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full
           insert sequence
          Length = 1053

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 249 acttcatcctcgcgttcgtcatcgactac 277
           ||||||||||||| |||| ||||||||||
Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
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>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full
           insert sequence
          Length = 1026

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 249 acttcatcctcgcgttcgtcatcgactac 277
           ||||||||||||| |||| ||||||||||
Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
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>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full
           insert sequence
          Length = 1069

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 249 acttcatcctcgcgttcgtcatcgactac 277
           ||||||||||||| |||| ||||||||||
Sbjct: 151 acttcatcctcgccttcgccatcgactac 179
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>emb|CR376854.12| Zebrafish DNA sequence from clone DKEY-197C15 in linkage group 24,
              complete sequence
          Length = 201044

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     aacaaaagcaggagtaacaaa 53
              |||||||||||||||||||||
Sbjct: 173168 aacaaaagcaggagtaacaaa 173148
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>ref|NM_121779.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT5G17730 mRNA, complete cds
          Length = 1413

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 157  ctccaactctaacctcttcc 176
            ||||||||||||||||||||
Sbjct: 1350 ctccaactctaacctcttcc 1331
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 350    cccgccgcgatcgccgaggtcaag 373
              |||||||||||||||||| |||||
Sbjct: 685997 cccgccgcgatcgccgagttcaag 685974
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 350     cccgccgcgatcgccgaggtcaag 373
               |||||||||||||||||| |||||
Sbjct: 1210467 cccgccgcgatcgccgagttcaag 1210444
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>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete sequence
          Length = 189263

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     aacaaaagcaggagtaacaa 52
              ||||||||||||||||||||
Sbjct: 167561 aacaaaagcaggagtaacaa 167580
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>gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosome 15, complete sequence
          Length = 169366

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aacaaaagcaggagtaacaa 52
              ||||||||||||||||||||
Sbjct: 135667 aacaaaagcaggagtaacaa 135648
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>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16
          Length = 348971

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 352    cgccgcgatcgccgaggtca 371
              ||||||||||||||||||||
Sbjct: 342587 cgccgcgatcgccgaggtca 342568
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 350     cccgccgcgatcgccgaggtcaag 373
               |||||||||||||||||| |||||
Sbjct: 1113377 cccgccgcgatcgccgagttcaag 1113354
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>gb|AF451898.1| Heliothis zea virus 1, complete genome
          Length = 228089

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    aaactccaactctaacctct 173
              ||||||||||||||||||||
Sbjct: 189248 aaactccaactctaacctct 189229
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>dbj|AB006706.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MVA3
          Length = 81701

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   ctccaactctaacctcttcc 176
             ||||||||||||||||||||
Sbjct: 34811 ctccaactctaacctcttcc 34830
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>gb|AC107746.9| Mus musculus chromosome 1, clone RP23-311K2, complete sequence
          Length = 202822

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    agcaggagtaacaaaagcta 58
             ||||||||||||||||||||
Sbjct: 93565 agcaggagtaacaaaagcta 93584
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 403     cagcctcggcggcgccacgg 422
               ||||||||||||||||||||
Sbjct: 2260172 cagcctcggcggcgccacgg 2260153


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,390,998
Number of Sequences: 3902068
Number of extensions: 2390998
Number of successful extensions: 43892
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43376
Number of HSP's gapped (non-prelim): 516
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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