ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart59h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S35C2_MOUSE (Q8VCX2) Solute carrier family 35 member C2 (Ovarian... 34 0.21
2S35C2_HUMAN (Q9NQQ7) Solute carrier family 35 member C2 (Ovarian... 34 0.21
3FUCT1_CAEEL (Q968A5) GDP-fucose transporter 32 1.1
4YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I 32 1.1
5VMSA_HBVW9 (P17101) Major surface antigen precursor 29 6.8

>S35C2_MOUSE (Q8VCX2) Solute carrier family 35 member C2 (Ovarian cancer|
           overexpressed gene 1 protein)
          Length = 364

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 196 TAGLVAAWYASNIGVLLLNKYLLSFYGFRYPVFLTACHM 312
           T GLV  +Y  +IG+   NK+L     F +P+F+T  H+
Sbjct: 17  TLGLVLLYYCFSIGITFYNKWLTK--SFHFPLFMTMLHL 53



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>S35C2_HUMAN (Q9NQQ7) Solute carrier family 35 member C2 (Ovarian cancer|
           overexpressed gene 1 protein)
          Length = 365

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 196 TAGLVAAWYASNIGVLLLNKYLLSFYGFRYPVFLTACHM 312
           T GLV  +Y  +IG+   NK+L     F +P+F+T  H+
Sbjct: 17  TLGLVLLYYCFSIGITFYNKWLTK--SFHFPLFMTMLHL 53



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>FUCT1_CAEEL (Q968A5) GDP-fucose transporter|
          Length = 363

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 208 VAAWYASNIGVLLLNKYLLSFYGFRYPVFLT 300
           V+A++  +IG++ LNKYLLS      P+F+T
Sbjct: 34  VSAYWVFSIGLVFLNKYLLSSVQLDAPLFIT 64



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>YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I|
          Length = 374

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = +1

Query: 205 LVAAWYASNIGVLLLNKYLLSF--YGFRYPVFLTACHM 312
           +V AWY  ++ + ++NK++ S     F++P+FL++C M
Sbjct: 56  IVLAWYFFSLLLSMMNKWIFSESKMDFQFPLFLSSCQM 93



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>VMSA_HBVW9 (P17101) Major surface antigen precursor|
          Length = 399

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 16  QRAGAGQPDQTKPEPAPAGRQEGRRPT 96
           Q  G   P  T P PA A RQ GR+PT
Sbjct: 79  QAQGMLTPVSTIPPPASANRQSGRQPT 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,638,602
Number of Sequences: 219361
Number of extensions: 356583
Number of successful extensions: 1968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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