ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart59g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 i... 32 1.0
2SYT_IDILO (Q5QYN4) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 29 6.6

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
 Frame = +2

Query: 134 DLDDTLYPGNTGIGPALRRNIDEFLVXXXXXXXXXXXXXXXXXXXSHGSTLAGLIALGHD 313
           D+D+TLY  +T +   +++++  F                      +G ++ GLI     
Sbjct: 58  DIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIESYYQEYGLSVKGLIKNKQI 117

Query: 314 VHPDEYHSYVHGRLP-YDVIAADPQLAAALQSMPQRKI-------LFTNSDRAH 451
               +Y++++   LP  D +  D +L   L ++ ++K+       LFTNS + H
Sbjct: 118 DDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSYKNH 171



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>SYT_IDILO (Q5QYN4) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 638

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 210 TRNSSMLRLSAGPMPVLPGYSVSSRSMRRQSKGEVTGDWNAMAGELAARSRG 55
           T N   +R SA       G+ +   +++R     V GD    AGE+A R+RG
Sbjct: 561 TLNEKGIRASADLRNEKIGFKIREHTLKRVPYLLVVGDKEVEAGEVAVRTRG 612


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,197,348
Number of Sequences: 219361
Number of extensions: 521027
Number of successful extensions: 1710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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