ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59g04 |
|---|---|
| Clone Library Name | barley_pub |
>CNBL1_ARATH (O81445) Calcineurin B-like protein 1 (SOS3-like calcium-binding| protein 5) Length = 212 Score = 88.6 bits (218), Expect = 5e-18 Identities = 47/62 (75%), Positives = 52/62 (83%) Frame = +2 Query: 233 GCIQSTPKRRQHPAGYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEFQL 412 GC S K + G+EDPV+LAS+TAFSVSEVEALFELFKSIS SV+DDGLINKEEFQL Sbjct: 1 GCFHS--KAAKEFRGHEDPVKLASETAFSVSEVEALFELFKSISSSVVDDGLINKEEFQL 58 Query: 413 AL 418 AL Sbjct: 59 AL 60
>CNBL9_ARATH (Q9LTB8) Calcineurin B-like protein 9| Length = 212 Score = 85.1 bits (209), Expect = 6e-17 Identities = 46/62 (74%), Positives = 53/62 (85%) Frame = +2 Query: 233 GCIQSTPKRRQHPAGYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEFQL 412 GC ST R + P +E+PV+LAS+TAFSVSEVEAL+ELFKSIS SV+DDGLINKEEFQL Sbjct: 1 GCFHSTAAR-EFP-DHENPVKLASETAFSVSEVEALYELFKSISSSVVDDGLINKEEFQL 58 Query: 413 AL 418 AL Sbjct: 59 AL 60
>CNBL4_ARATH (O81223) Calcineurin B-like protein 4 (Protein SALT OVERLY| SENSITIVE 3) Length = 221 Score = 79.3 bits (194), Expect = 3e-15 Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 2/64 (3%) Frame = +2 Query: 233 GCIQSTPKRRQ--HPAGYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEF 406 GC S K++ P GYEDP LAS T F+V EVEAL+ELFK +S S+IDDGLI+KEEF Sbjct: 1 GCSVSKKKKKNAMRPPGYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEF 60 Query: 407 QLAL 418 QLAL Sbjct: 61 QLAL 64
>CNBL8_ARATH (Q9FUQ7) Calcineurin B-like protein 8| Length = 214 Score = 75.9 bits (185), Expect = 4e-14 Identities = 36/55 (65%), Positives = 46/55 (83%) Frame = +2 Query: 254 KRRQHPAGYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEFQLAL 418 KR +HP GYEDP LAS+T F+V+E+EAL +LFK +S S+I+DGLI+KEEF LAL Sbjct: 11 KRAKHPRGYEDPHVLASETPFTVNEIEALHDLFKKLSTSIINDGLIHKEEFLLAL 65
>CNBL3_ARATH (Q8LEM7) Calcineurin B-like protein 3 (SOS3-like calcium-binding| protein 6) Length = 226 Score = 72.0 bits (175), Expect = 5e-13 Identities = 36/48 (75%), Positives = 40/48 (83%) Frame = +2 Query: 275 GYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEFQLAL 418 G DP LA +T FSVSE+EAL+ELFK IS +VIDDGLINKEEFQLAL Sbjct: 29 GLGDPELLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL 76
>CNBL2_ARATH (Q8LAS7) Calcineurin B-like protein 2 (SOS3-like calcium-binding| protein 1) Length = 226 Score = 71.2 bits (173), Expect = 9e-13 Identities = 36/48 (75%), Positives = 39/48 (81%) Frame = +2 Query: 275 GYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEFQLAL 418 G DP LA T FSVSE+EAL+ELFK IS +VIDDGLINKEEFQLAL Sbjct: 29 GLGDPELLARDTVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL 76
>CNB10_ARATH (Q7FRS8) Calcineurin B-like protein 10| Length = 256 Score = 62.4 bits (150), Expect = 4e-10 Identities = 33/61 (54%), Positives = 45/61 (73%) Frame = +2 Query: 236 CIQSTPKRRQHPAGYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEFQLA 415 C ++P+ QH D +LA ++ FSV+EVEAL+ELFK +S S+IDDGLI+KEE +LA Sbjct: 51 CRSTSPRTCQHA----DLERLARESQFSVNEVEALYELFKKLSCSIIDDGLIHKEELRLA 106 Query: 416 L 418 L Sbjct: 107 L 107
>CNBL6_ARATH (Q9C5P6) Calcineurin B-like protein 6 (SOS3-like calcium-binding| protein 2) Length = 226 Score = 50.4 bits (119), Expect = 2e-06 Identities = 30/61 (49%), Positives = 39/61 (63%) Frame = +2 Query: 236 CIQSTPKRRQHPAGYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEFQLA 415 C PK RQ+P +A T F+V+E+EAL+ELFKSIS +GLI+KE+FQL Sbjct: 20 CDADPPKVRQNPK------DVARGTVFTVNEIEALYELFKSIS----KNGLIDKEQFQLV 69 Query: 416 L 418 L Sbjct: 70 L 70
>CNBL5_ARATH (Q7FZF1) Calcineurin B-like protein 5 (SOS3-like calcium-binding| protein 4) Length = 202 Score = 42.0 bits (97), Expect = 6e-04 Identities = 26/61 (42%), Positives = 34/61 (55%) Frame = +2 Query: 236 CIQSTPKRRQHPAGYEDPVQLASQTAFSVSEVEALFELFKSISGSVIDDGLINKEEFQLA 415 C + RRQ ED LASQT FS +EVE L LF ++ + +D L+ KE+FQ Sbjct: 4 CSKQLEGRRQ-----EDISLLASQTFFSEAEVEVLHGLFIKLTSCLSNDNLLTKEKFQFI 58 Query: 416 L 418 L Sbjct: 59 L 59
>TF7L2_HUMAN (Q9NQB0) Transcription factor 7-like 2 (HMG box transcription| factor 4) (T-cell-specific transcription factor 4) (TCF-4) (hTCF-4) Length = 619 Score = 32.0 bits (71), Expect = 0.61 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +1 Query: 10 DSATPSPYPTSQNQTAARPHA-RTPPLTAGIRPDPLPHLLALRPHTSMQWVEA 165 DS PSP A+ +T PL+ ++PDPL HL + P ++ EA Sbjct: 508 DSPPPSPNLLGSPPRDAKSQTEQTQPLSLSLKPDPLAHLSMMPPPPALLLAEA 560
>VE2_HPV15 (P36784) Regulatory protein E2| Length = 382 Score = 31.6 bits (70), Expect = 0.79 Identities = 34/118 (28%), Positives = 43/118 (36%), Gaps = 10/118 (8%) Frame = +1 Query: 10 DSATPSPYPTSQNQTAARPHARTPPLTAGIRPDPLPHLLALRPHTSMQWVEAAVMRDWSR 189 DSA SP + T+ RTPP T R + T Q + D +R Sbjct: 139 DSAPESPANRQLSSTSVSSRKRTPPRTEARRYN-RKESSPTTTTTRRQKRQGQRQEDTAR 197 Query: 190 RR*VLFSGRGELGHGVHPVH----AEAEAAPCWLRGPRTTRLP------DRLQRQRSR 333 R GR E+ G + E +P W RG R+ R P L R RSR Sbjct: 198 RSRSTSRGRQEISRGGNQRRRRRSRETSISPAWGRGGRSRRGPTTRSQSKSLSRSRSR 255
>AGRN_RAT (P25304) Agrin precursor| Length = 1959 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 9/58 (15%) Frame = +1 Query: 4 CRDSATPSPYPTSQNQTAAR---------PHARTPPLTAGIRPDPLPHLLALRPHTSM 150 C++S TP PTS + T R PH + PL+ G P L + PHT++ Sbjct: 864 CQESVTPGASPTSASMTTPRHILSKTLPFPH-NSLPLSPGSTTHDWPTPLPISPHTTV 920
>CASK_BALPH (Q27952) Kappa-casein (Fragment)| Length = 145 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 9/46 (19%) Frame = +1 Query: 28 PYPTSQNQTAARPHARTP---------PLTAGIRPDPLPHLLALRP 138 PYP A RPHA+ P P T P P P +A+ P Sbjct: 41 PYPYYAKPVAVRPHAQIPQWQFLPNIHPPTVAHHPHPRPSFIAIPP 86
>EGLN1_HUMAN (Q9GZT9) Egl nine homolog 1 (EC 1.14.11.-) (Hypoxia-inducible| factor prolyl hydroxylase 2) (HIF-prolyl hydroxylase 2) (HIF-PH2) (HPH-2) (Prolyl hydroxylase domain-containing protein 2) (PHD2) (SM-20) Length = 426 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +1 Query: 175 RDWSRRR*VLFSGRGELGHGVHPVHAEAEAAPCWLRGPR 291 +DW + + V G LGHGV P A P + PR Sbjct: 49 QDWKKHKLVCQGSEGALGHGVGPHQHSGPAPPAAVPPPR 87
>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 252 Score = 29.6 bits (65), Expect = 3.0 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 11/53 (20%) Frame = +1 Query: 10 DSATPSPYPTSQNQTAARPHARTPPLTAG-----------IRPDPLPHLLALR 135 DS P P P ++ TAA P R+PP AG RP LP LALR Sbjct: 85 DSPPPEPAPEAR-PTAAAPRPRSPPPGAGPGGGADPSHPPSRPFRLPPRLALR 136
>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 245 Score = 29.6 bits (65), Expect = 3.0 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 11/53 (20%) Frame = +1 Query: 10 DSATPSPYPTSQNQTAARPHARTPPLTAG-----------IRPDPLPHLLALR 135 DS P P P ++ TAA P R+PP AG RP LP LALR Sbjct: 78 DSPPPEPAPEAR-PTAAAPRPRSPPPGAGPGGGANPSHPPSRPFRLPPRLALR 129
>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 263 Score = 29.6 bits (65), Expect = 3.0 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 11/53 (20%) Frame = +1 Query: 10 DSATPSPYPTSQNQTAARPHARTPPLTAG-----------IRPDPLPHLLALR 135 DS P P P ++ TAA P R+PP AG RP LP LALR Sbjct: 84 DSPPPEPAPEAR-PTAAAPRPRSPPPGAGPGGGANPSHPPSRPFRLPPRLALR 135
>VE4_HPV57 (P22157) Probable protein E4| Length = 124 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 10 DSATPSPYPTSQNQTAARPHARTPPLTAGIR 102 D P P Q Q +RPH+RTPP +R Sbjct: 40 DLLRPQSQPQPQPQQQSRPHSRTPPRRHRVR 70
>BTBD7_MOUSE (Q8CFE5) BTB/POZ domain-containing protein 7| Length = 1130 Score = 29.6 bits (65), Expect = 3.0 Identities = 27/98 (27%), Positives = 44/98 (44%) Frame = +1 Query: 31 YPTSQNQTAARPHARTPPLTAGIRPDPLPHLLALRPHTSMQWVEAAVMRDWSRRR*VLFS 210 +P++ ++ A+ A TA + D L + RP S + V+ + S RR + Sbjct: 1035 FPSAASENASHGPAHVRARTA-VETDLTFGLTSNRP-PSHSACSSEVLEERSSRR---LT 1089 Query: 211 GRGELGHGVHPVHAEAEAAPCWLRGPRTTRLPDRLQRQ 324 LGHG H +A+ E RG R+ PD L ++ Sbjct: 1090 DSEPLGHGAHQRNADLERGDSISRGRRSPSKPDFLYKK 1127
>LFTR_PSESM (Q87ZS4) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)| (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) Length = 229 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +1 Query: 229 HGVHPVHAEAEAAPCWLRGPRTTRLPDRLQRQRSRGVV 342 HG P E + W PRT LP+ L RS G V Sbjct: 43 HGCFPWFQEGQPILWWSPDPRTVLLPEELHISRSLGKV 80
>K1543_MOUSE (Q80VC9) Protein KIAA1543| Length = 1252 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Frame = +1 Query: 7 RDSATPSPYPTSQNQTAARP-HARTPPLTAGIRP----DPLPHLLALRP 138 R S P P PT ++ ARP + PLT + P D LPHL P Sbjct: 765 RRSPGPGPSPTPRSPKHARPAELKLAPLTRVLTPPHDVDSLPHLRKFSP 813
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 29.3 bits (64), Expect = 3.9 Identities = 22/62 (35%), Positives = 24/62 (38%) Frame = -3 Query: 219 AAAGEEHLTPPRPITHHRRLHPLHRSVGPQRQQVRQRIRADSGGQGRRAGVRACGGLVLA 40 AAAG H P HH H H Q+QQ S QG A + GG A Sbjct: 296 AAAGSHHHQPHHHHHHHHHHHQHHNHQQQQQQQT-------SLSQG-HASLTVAGGSASA 347 Query: 39 GG 34 GG Sbjct: 348 GG 349
>PKHA4_MOUSE (Q8VC98) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 588 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +1 Query: 13 SATPSPYPTSQNQTAARPHARTPPLTAGIRPDPLPHLLALRPHTSMQWVEAAVMRDWSRR 192 S PSP + ++A AR PPL+AG P RPHT + ++ DW + Sbjct: 237 SRPPSPLSLPRPRSAP---ARRPPLSAGDISFPA------RPHTPLSRIDVRPPLDWGPQ 287 Query: 193 R 195 R Sbjct: 288 R 288
>HUNB_DROMU (O46250) Protein hunchback (Fragments)| Length = 174 Score = 28.9 bits (63), Expect = 5.1 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +1 Query: 4 CRDSATPSPYPTSQNQTAARPHARTPPLTAGIRPDPLP 117 C + TPSP QN P+ P + A +RP P P Sbjct: 78 CAAAMTPSPSNNDQNSPGL-PNPMQPTMPASMRPSPQP 114
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%) Frame = +1 Query: 13 SATPSPYPTSQNQTAARPHARTP-----PLTAGIRPDPLP 117 +ATP P Q + A +P R P P ++G RP P P Sbjct: 151 TATPGSMPRPQAKPAPKPGGRAPRVANNPFSSGPRPAPRP 190
>CBX4_HUMAN (O00257) Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2)| (hPc2) Length = 558 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -3 Query: 201 HLTPPRPITHHRRLHPLHRSVGPQRQQVRQRIRADSGGQ 85 H P P HH H H +VG VR+R +++ G+ Sbjct: 380 HHPHPHPHHHHHHHHHHHHAVGLNLSHVRKRCLSETHGE 418
>ANR11_HUMAN (Q6UB99) Ankyrin repeat domain-containing protein 11 (Ankyrin| repeat-containing cofactor 1) Length = 2664 Score = 28.9 bits (63), Expect = 5.1 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 4/111 (3%) Frame = +1 Query: 13 SATPSPYPTSQNQTAARPH---ARTPPLTAGIRPD-PLPHLLALRPHTSMQWVEAAVMRD 180 S P+P P Q + A PP + PD P P+ +A Q + A D Sbjct: 2239 SVEPAPVPPEQRPLGSGDQGAEAEGPPAASLCAPDGPAPNTVA-----QAQAADGAGPED 2293 Query: 181 WSRRR*VLFSGRGELGHGVHPVHAEAEAAPCWLRGPRTTRLPDRLQRQRSR 333 + G G G+ P AE + + PR +P R+ R R++ Sbjct: 2294 DTEASRAAAPAEGPPG-GIQPEAAEPKPTAEAPKAPRVEEIPQRMTRNRAQ 2343
>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -3 Query: 198 LTPPRPITHHRRLHPLHRSVGPQRQQVRQRIRADSGGQGRRAG 70 L PP +T H P R P+R +R D GG+ R AG Sbjct: 1003 LQPPEEVTPHPAT-PARRPPSPRRSHHPRRNSLDGGGRSRGAG 1044
>LFTR_PSEPK (Q88FS7) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)| (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) Length = 226 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 229 HGVHPVHAEAEAAPCWLRGPRTTRLPDRLQRQRS 330 HG P + + + W PRT LPD+L RS Sbjct: 43 HGCFPWYQDGQPILWWSPDPRTVLLPDQLHVSRS 76
>RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1137 Score = 28.9 bits (63), Expect = 5.1 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 19 TPSPYPTSQNQTAARPHARTPPLTAGIRPDP 111 TP P + +A PHA TP AG+ DP Sbjct: 259 TPGPGADAGGPSAVDPHAPTPEAGAGLAADP 289
>TRIM9_RAT (Q91ZY8) Tripartite motif protein 9 (SNAP-25-interacting RING| finger protein) Length = 710 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 35 PPAKTRPPHARTPARLP*PPESARIRCLTCWRCGPTLL 148 PPA PP +PA P P S C+TC +C +L+ Sbjct: 103 PPAMPPPPTHLSPALAPVPRNS----CITCPQCHRSLI 136
>ATG5_EMENI (Q5B2Q6) Autophagy protein 5| Length = 482 Score = 28.5 bits (62), Expect = 6.7 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = -3 Query: 75 AGVRACGGLVLAGGIWRW 22 A VRACGG GG+W W Sbjct: 410 ADVRACGGGGQGGGLWGW 427
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +1 Query: 4 CRDSATPSPYPTSQNQTAARPHARTPPLTAGIRPDPL 114 C D+ TP P P S N A A PP+++ PL Sbjct: 263 CSDALTPPPLPPSNNLPAHPGPASQPPVSSATMHLPL 299
>TRIM9_MOUSE (Q8C7M3) Tripartite motif protein 9| Length = 817 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 35 PPAKTRPPHARTPARLP*PPESARIRCLTCWRCGPTLL 148 PPA PP +PA P P S C+TC +C +L+ Sbjct: 103 PPAMPPPPTHLSPALAPVPRNS----CITCPQCHRSLI 136
>GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-protein coupled| receptor PGR1) Length = 609 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Frame = +1 Query: 22 PSPYPTSQNQT--AARPHARTPPLTAGIRPDPLP----HLLALRPHTSMQWVEAAVMR 177 P P+P + A A TPP +A P P P H +LRP S W E +R Sbjct: 519 PGPFPAAPAAPDGADPGEAPTPPSSAQRSPGPRPSAHSHAGSLRPGLSASWGEPGGLR 576
>LSM4_CAEEL (Q19952) Probable U6 snRNA-associated Sm-like protein LSm4| Length = 123 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 132 QRQQVRQRIRADSGGQGRRAGVRACGG 52 +RQQ R++ R GG+G R G R GG Sbjct: 88 RRQQQREQSRGRGGGRGGRGGHRGGGG 114
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 9/46 (19%) Frame = +1 Query: 28 PYPTSQNQTAARPHARTP---------PLTAGIRPDPLPHLLALRP 138 PYP A RPHA+ P P T RP P +A+ P Sbjct: 41 PYPFYARPVAVRPHAQKPQWQDQPNVYPPTGARRPRPHASFIAIPP 86
>OPGH_RALSO (Q8XVC2) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)| Length = 862 Score = 28.1 bits (61), Expect = 8.8 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Frame = +1 Query: 13 SATPSPYPTSQNQTAARPHARTPPLTAGIRPDPLPHLLALRPHTSMQWVEAAVMRDWSRR 192 +ATP P P ++ TA R H T P A P P WV + W R Sbjct: 108 TATPEPAPPLEHDTAGRIHLDTGPEPARRSMVPWP------------WVLGPI---WRAR 152 Query: 193 R*V--LFSGRGELGHGVHPVHAEAEAAP 270 R + LFSG G PV E +P Sbjct: 153 RAIGRLFSG------GTAPVPYEQPDSP 174
>ZSWM3_HUMAN (Q96MP5) Zinc finger SWIM domain-containing protein 3| Length = 696 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 109 PLPHLLALRPHTSMQWV-EAAVMRDWSRRR*VLFSGRGEL 225 P H+LAL HTS Q V EA V R W ++ L GEL Sbjct: 560 PCRHILALL-HTSQQPVGEAMVCRRWQKKYQYLLGPNGEL 598
>TRUB_SYNPX (P59884) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 291 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 219 AAAGEEHLTPPRPITHHRRLHPLHRSVGPQRQQVRQRIRADSG 91 A GE+ + PPRP+T H RL LH P + Q+ + +G Sbjct: 133 ARRGEQMVLPPRPVTIH-RLQLLHWD--PNQGQLTLEVHCSAG 172
>CAC1F_MOUSE (Q9JIS7) Voltage-dependent L-type calcium channel alpha-1F subunit| (Voltage-gated calcium channel alpha subunit Cav1.4) Length = 1985 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = +1 Query: 7 RDSATPSPYPTSQNQTAARPHARTPPLTAGIRPDPLPHLLALRPHTSMQWVE 162 RDS PSP+ TS Q H TP A PH P ++Q ++ Sbjct: 1773 RDSFEPSPFTTSLVQQHVNGHMSTPTFAA-------PHACRSEPSFTIQCLQ 1817
>FOXP3_MOUSE (Q99JB6) Forkhead box protein P3 (Scurfin)| Length = 429 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 13 SATPSPYPTSQNQTAARPHARTPPLTAGIRPDPLPHLLAL---RPH 141 S++ +P P SQ Q P P +G R P PHL AL RPH Sbjct: 57 SSSLNPLPPSQLQLPTVPLVMVAP--SGARLGPSPHLQALLQDRPH 100
>BEGIN_RAT (O88881) Brain-enriched guanylate kinase-associated protein| Length = 611 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = +1 Query: 19 TPSPYPTSQNQTAARPHARTPPLTAGIRPDPLPHLLALRPHTSMQW 156 T SPYP + A A PP +R P + LA R QW Sbjct: 389 TVSPYPAEPYRYPASQQALMPPNLWSLRAKPSGNRLAAREDIRGQW 434 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,494,886 Number of Sequences: 219361 Number of extensions: 1055246 Number of successful extensions: 4772 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 4214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4740 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
