Clone Name | bart59g04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY104107.1| Zea mays PCO062189 mRNA sequence Length = 1394 Score = 133 bits (67), Expect = 5e-28 Identities = 121/139 (87%) Strand = Plus / Plus Query: 273 ctggctacgaggaccccgtacaactcgcctcccagaccgccttcagcgtcagcgaagtcg 332 ||||||||||||||||||| || |||||||||||||||||||||||||| || || || | Sbjct: 448 ctggctacgaggaccccgtgcacctcgcctcccagaccgccttcagcgttagtgaggttg 507 Query: 333 aggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatca 392 |||| | || ||||||||||||||||| ||||| || ||||| |||||||| |||||| Sbjct: 508 aggctctattcgagctgttcaagagcataagtggttcggtgattgatgatggcctgatca 567 Query: 393 ataaggaagagttccagct 411 | |||||||| |||||||| Sbjct: 568 acaaggaagaattccagct 586
>gb|DQ201195.1| Oryza sativa (japonica cultivar-group) calcineurin B-like protein 1 (CBL1) mRNA, complete cds Length = 642 Score = 121 bits (61), Expect = 2e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 296 ctcgcctcccagaccgccttcagcgtcagcgaagtcgaggcgttgtttgagctgttcaag 355 ||||||||| |||||||||| ||||| || || || ||||| ||||| |||||||||||| Sbjct: 61 ctcgcctccgagaccgcctttagcgtaagtgaggtggaggctttgttcgagctgttcaag 120 Query: 356 agcattagtggatcagtgatcgatgatggtttgatcaataaggaagagttccagcttgca 415 ||||||||||| || |||||||| ||||| | ||||||||||||||||||| |||||| Sbjct: 121 agcattagtggttctgtgatcgacgatgggctcatcaataaggaagagttccgacttgca 180 Query: 416 ttgtt 420 ||||| Sbjct: 181 ttgtt 185
>emb|AJ489272.1|CSA489272 Crocus sativus partial mRNA for calcineurin B protein Length = 214 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Plus Query: 314 ttcagcgtcagcgaagtcgaggcgttgtttgagctgttcaagagcattagtggatcagtg 373 ||||||||||| ||||| ||||| ||||||||||| | ||||||||| ||| | || ||| Sbjct: 100 ttcagcgtcagtgaagttgaggcattgtttgagctatacaagagcataagtagttctgtg 159 Query: 374 atcgatgatggtttgatcaataaggaagagttccagcttgc 414 || |||||||| ||||| || |||||||| || |||||||| Sbjct: 160 attgatgatggattgataaacaaggaagaatttcagcttgc 200
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence Length = 141307 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 ||||| ||||| ||||||||||||||||||||||| || |||||||| ||||| | ||| Sbjct: 94480 gaggctttgttcgagctgttcaagagcattagtggttctgtgatcgacgatgggctcatc 94539 Query: 392 aataagg 398 ||||||| Sbjct: 94540 aataagg 94546 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 aggaagagttccagcttgcattgtt 420 ||||||||||||| ||||||||||| Sbjct: 101568 aggaagagttccaacttgcattgtt 101592
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 ||||| ||||| ||||||||||||||||||||||| || |||||||| ||||| | ||| Sbjct: 21779797 gaggctttgttcgagctgttcaagagcattagtggttctgtgatcgacgatgggctcatc 21779856 Query: 392 aataagg 398 ||||||| Sbjct: 21779857 aataagg 21779863 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 aggaagagttccagcttgcattgtt 420 ||||||||||||| ||||||||||| Sbjct: 21786885 aggaagagttccaacttgcattgtt 21786909
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 69.9 bits (35), Expect = 6e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 ||||| ||||| ||||||||||||||||||||||| || |||||||| ||||| | ||| Sbjct: 21791460 gaggctttgttcgagctgttcaagagcattagtggttctgtgatcgacgatgggctcatc 21791519 Query: 392 aataagg 398 ||||||| Sbjct: 21791520 aataagg 21791526 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 aggaagagttccagcttgcattgtt 420 ||||||||||||| ||||||||||| Sbjct: 21798548 aggaagagttccaacttgcattgtt 21798572
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 ||||| ||||| ||||||||||||||||||| ||| || |||||||| ||||| | ||| Sbjct: 24591 gaggctttgttcgagctgttcaagagcattaatggttctgtgatcgacgatgggcttatc 24650 Query: 392 aataagg 398 ||||||| Sbjct: 24651 aataagg 24657
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 ||||| ||||| ||||||||||||||||||| ||| || |||||||| ||||| | ||| Sbjct: 174056 gaggctttgttcgagctgttcaagagcattaatggttctgtgatcgacgatgggcttatc 174115 Query: 392 aataagg 398 ||||||| Sbjct: 174116 aataagg 174122
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 ||||| ||||| ||||||||||||||||||| ||| || |||||||| ||||| | ||| Sbjct: 3656919 gaggctttgttcgagctgttcaagagcattaatggttctgtgatcgacgatgggcttatc 3656978 Query: 392 aataagg 398 ||||||| Sbjct: 3656979 aataagg 3656985
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 ||||| ||||| ||||||||||||||||||| ||| || |||||||| ||||| | ||| Sbjct: 3665613 gaggctttgttcgagctgttcaagagcattaatggttctgtgatcgacgatgggcttatc 3665672 Query: 392 aataagg 398 ||||||| Sbjct: 3665673 aataagg 3665679
>gb|AY818172.1| Ornithogalum virens clone 5OvR1 putative calcineurin B-like protein mRNA, partial cds Length = 742 Score = 58.0 bits (29), Expect = 2e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 306 agaccgccttcagcgtcagcgaagtcgaggcgttgtttgagctgttcaagagcattagtg 365 ||||||| ||||| || |||||||| || || || || ||||| || |||||||| || Sbjct: 276 agaccgctttcagtgttagcgaagttgaagcattattcgagctttttaagagcatcagca 335 Query: 366 gatcagtgatcgatgatggtttgatcaataaggaagagttccagcttgc 414 | || ||||| |||||||| ||||| ||||||||||| || |||||||| Sbjct: 336 gttccgtgatagatgatgggttgataaataaggaagaatttcagcttgc 384
>gb|BC047916.1| Homo sapiens signal peptide, CUB domain, EGF-like 1, mRNA (cDNA clone IMAGE:6189117), complete cds Length = 2293 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 22 ccgcacgcccgcacgcccgcacgcc 46
>gb|AY263772.1| Seepiophila jonesi clone E2-2A microsatellite sequence Length = 208 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 104 ccgcacgcccgcacgcccgcacgcc 128 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 96 ccgcacgcccgcacgcccgcacgcc 120 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgca 76 ||||||||||||||||||||| Sbjct: 112 ccgcacgcccgcacgcccgca 132
>gb|DQ201200.1| Oryza sativa (japonica cultivar-group) calcineurin B-like protein 6 (CBL6) mRNA, complete cds Length = 681 Score = 50.1 bits (25), Expect = 0.006 Identities = 64/77 (83%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 |||||| ||| |||||||||||||| ||||| | | ||| | |||||||| |||||| Sbjct: 142 gaggcgctgtatgagctgttcaagaagattagcagtgctgtggttgatgatggcttgatc 201 Query: 392 aataaggaagagttcca 408 ||||||||||| ||||| Sbjct: 202 aataaggaagaattcca 218
>gb|BT014682.1| Oryza sativa AK111505 mRNA sequence Length = 678 Score = 50.1 bits (25), Expect = 0.006 Identities = 64/77 (83%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 |||||| ||| |||||||||||||| ||||| | | ||| | |||||||| |||||| Sbjct: 139 gaggcgctgtatgagctgttcaagaagattagcagtgctgtggttgatgatggcttgatc 198 Query: 392 aataaggaagagttcca 408 ||||||||||| ||||| Sbjct: 199 aataaggaagaattcca 215
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 10962913 ccgcacgcccgcacgcccgcacgcc 10962937 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 323 agcgaagtcgaggcgttgtttgagctgttcaaga 356 ||||| || |||||||||| |||||||||||||| Sbjct: 23696910 agcgaggttgaggcgttgtatgagctgttcaaga 23696943 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 acgcccgcacgcccgcacgcc 80 ||||||||||||||||||||| Sbjct: 10962909 acgcccgcacgcccgcacgcc 10962929
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 18116 ccgcacgcccgcacgcccgcacgcc 18092 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 acgcccgcacgcccgcacgcc 80 ||||||||||||||||||||| Sbjct: 18120 acgcccgcacgcccgcacgcc 18100
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 10961014 ccgcacgcccgcacgcccgcacgcc 10961038 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 323 agcgaagtcgaggcgttgtttgagctgttcaaga 356 ||||| || |||||||||| |||||||||||||| Sbjct: 23689938 agcgaggttgaggcgttgtatgagctgttcaaga 23689971 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 acgcccgcacgcccgcacgcc 80 ||||||||||||||||||||| Sbjct: 10961010 acgcccgcacgcccgcacgcc 10961030
>dbj|AK111505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C11, full insert sequence Length = 1075 Score = 50.1 bits (25), Expect = 0.006 Identities = 64/77 (83%) Strand = Plus / Plus Query: 332 gaggcgttgtttgagctgttcaagagcattagtggatcagtgatcgatgatggtttgatc 391 |||||| ||| |||||||||||||| ||||| | | ||| | |||||||| |||||| Sbjct: 278 gaggcgctgtatgagctgttcaagaagattagcagtgctgtggttgatgatggcttgatc 337 Query: 392 aataaggaagagttcca 408 ||||||||||| ||||| Sbjct: 338 aataaggaagaattcca 354
>gb|AC015583.34| Mus musculus chromosome 6, clone RP23-329P9, complete sequence Length = 201379 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 137601 ccgcacgcccgcacgcccgcacgcc 137625 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 137593 ccgcacgcccgcacgcccgcacgcc 137617 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgc 75 |||||||||||||||||||| Sbjct: 137609 ccgcacgcccgcacgcccgc 137628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cgcccgcacgcccgcacgcc 80 |||||||||||||||||||| Sbjct: 137590 cgcccgcacgcccgcacgcc 137609
>gb|AC091106.17| Mus musculus chromosome 6, clone RP23-103L13, complete sequence Length = 192344 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 13216 ccgcacgcccgcacgcccgcacgcc 13240 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 13208 ccgcacgcccgcacgcccgcacgcc 13232 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgc 75 |||||||||||||||||||| Sbjct: 13224 ccgcacgcccgcacgcccgc 13243 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cgcccgcacgcccgcacgcc 80 |||||||||||||||||||| Sbjct: 13205 cgcccgcacgcccgcacgcc 13224
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 ||||||||||||||||||||||||| Sbjct: 7736 ccgcacgcccgcacgcccgcacgcc 7760 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 acgcccgcacgcccgcacgcc 80 ||||||||||||||||||||| Sbjct: 7732 acgcccgcacgcccgcacgcc 7752
>gb|BT018557.1| Zea mays clone EL01N0439H03.d mRNA sequence Length = 1331 Score = 48.1 bits (24), Expect = 0.023 Identities = 36/40 (90%) Strand = Plus / Minus Query: 317 agcgtcagcgaagtcgaggcgttgtttgagctgttcaaga 356 ||||| ||||| |||||||| |||| |||||||||||||| Sbjct: 895 agcgtgagcgaggtcgaggcattgtatgagctgttcaaga 856
>gb|AY110621.1| Zea mays CL4371_1 mRNA sequence Length = 943 Score = 48.1 bits (24), Expect = 0.023 Identities = 36/40 (90%) Strand = Plus / Plus Query: 317 agcgtcagcgaagtcgaggcgttgtttgagctgttcaaga 356 ||||| ||||| |||||||| |||| |||||||||||||| Sbjct: 24 agcgtgagcgaggtcgaggcattgtatgagctgttcaaga 63
>ref|XM_463248.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1329 Score = 46.1 bits (23), Expect = 0.092 Identities = 44/51 (86%) Strand = Plus / Plus Query: 306 agaccgccttcagcgtcagcgaagtcgaggcgttgtttgagctgttcaaga 356 |||||| ||| || || ||||| || |||||||||| |||||||||||||| Sbjct: 454 agaccgtctttagtgtgagcgaggttgaggcgttgtatgagctgttcaaga 504
>gb|DQ201197.1| Oryza sativa (japonica cultivar-group) calcineurin B-like protein 3 (CBL3) mRNA, complete cds Length = 678 Score = 46.1 bits (23), Expect = 0.092 Identities = 44/51 (86%) Strand = Plus / Plus Query: 306 agaccgccttcagcgtcagcgaagtcgaggcgttgtttgagctgttcaaga 356 |||||| ||| || || ||||| || |||||||||| |||||||||||||| Sbjct: 113 agaccgtctttagtgtgagcgaggttgaggcgttgtatgagctgttcaaga 163
>emb|AJ564446.1|OAR564446 Ovis aries partial ACACA gene for acetyl-CoA carboxylase-alpha, exon 1A Length = 1022 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 54 cgccgcacgcccgcacgcccgcacgcc 80 |||||||||||||||||||||| |||| Sbjct: 140 cgccgcacgcccgcacgcccgcccgcc 166
>dbj|AK112092.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B01, full insert sequence Length = 1492 Score = 46.1 bits (23), Expect = 0.092 Identities = 44/51 (86%) Strand = Plus / Plus Query: 306 agaccgccttcagcgtcagcgaagtcgaggcgttgtttgagctgttcaaga 356 |||||| ||| || || ||||| || |||||||||| |||||||||||||| Sbjct: 472 agaccgtctttagtgtgagcgaggttgaggcgttgtatgagctgttcaaga 522
>dbj|AK111916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133I20, full insert sequence Length = 1393 Score = 46.1 bits (23), Expect = 0.092 Identities = 44/51 (86%) Strand = Plus / Plus Query: 306 agaccgccttcagcgtcagcgaagtcgaggcgttgtttgagctgttcaaga 356 |||||| ||| || || ||||| || |||||||||| |||||||||||||| Sbjct: 391 agaccgtctttagtgtgagcgaggttgaggcgttgtatgagctgttcaaga 441
>emb|CR391974.8| Zebrafish DNA sequence from clone CH211-59E10 in linkage group 19, complete sequence Length = 179116 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 57 cgcacgcccgcacgcccgcacgc 79 ||||||||||||||||||||||| Sbjct: 146431 cgcacgcccgcacgcccgcacgc 146453 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgc 79 |||||||||||||||| ||||||| Sbjct: 146438 ccgcacgcccgcacgcacgcacgc 146461 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 cgcacgcccgcacgcccgcacgcc 80 ||||||| |||||||||||||||| Sbjct: 146423 cgcacgcacgcacgcccgcacgcc 146446
>gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0002I03 map E1419S, complete sequence Length = 150945 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 323 agcgaagtcgaggcgttgtttgagctgttcaaga 356 ||||| || |||||||||| |||||||||||||| Sbjct: 144993 agcgaggttgaggcgttgtatgagctgttcaaga 145026
>emb|AL390840.17| Human DNA sequence from clone RP13-213K19 on chromosome X Contains a tubulin beta polypeptide pseudogene, complete sequence Length = 197611 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 377 gatgatggtttgatcaataagg 398 |||||||||||||||||||||| Sbjct: 27464 gatgatggtttgatcaataagg 27485
>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete sequence Length = 120116 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 323 agcgaagtcgaggcgttgtttgagctgttcaaga 356 ||||| || |||||||||| |||||||||||||| Sbjct: 28964 agcgaggttgaggcgttgtatgagctgttcaaga 28997
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcct 81 |||||||||||||||||||| ||||| Sbjct: 186950 ccgcacgcccgcacgcccgcccgcct 186975 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccgcacgcccgcacgcccgcacgcc 80 ||||||| |||||||||||||||||| Sbjct: 186941 gccgcacacccgcacgcccgcacgcc 186966
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcct 81 |||||||||||||||||||| ||||| Sbjct: 186950 ccgcacgcccgcacgcccgcccgcct 186975 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccgcacgcccgcacgcccgcacgcc 80 ||||||| |||||||||||||||||| Sbjct: 186941 gccgcacacccgcacgcccgcacgcc 186966
>ref|XM_510246.1| PREDICTED: Pan troglodytes LOC453256 (LOC453256), mRNA Length = 1065 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 53 ccgccgcacgcccgcacgcccgcac 77 ||||||||||| ||||||||||||| Sbjct: 382 ccgccgcacgcacgcacgcccgcac 406
>ref|NM_197779.1| Oryza sativa (japonica cultivar-group) putative calcineurin (OSJNBa0027P10.7), mRNA Length = 653 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 aggaagagttccagcttgcattgtt 420 ||||||||||||| ||||||||||| Sbjct: 5 aggaagagttccaacttgcattgtt 29
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 cttctccggccgcggcgagct 224 ||||||||||||||||||||| Sbjct: 1905067 cttctccggccgcggcgagct 1905087
>gb|BC003489.1| Mus musculus acidic nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:6313 IMAGE:2811622), complete cds Length = 1397 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 42 ccgctcgcccgcacgcccgcacgcc 66
>ref|NM_130889.1| Mus musculus acidic nuclear phosphoprotein 32 family, member B (Anp32b), mRNA Length = 1408 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 50 ccgctcgcccgcacgcccgcacgcc 74
>gb|AY083837.2| Geobacillus stearothermophilus strain ATCC 7954 acetohydroxy acid synthase large subunit (ilvB), acetohydroxy acid synthase small subunit (ilvN), ketol-acid reductoisomerase (ilvC), and 2-isopropylmalate synthase (leuA) genes, complete cds; and isopropylmalate dehydratase (leuC) gene, partial cds Length = 5403 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 aagtcgaggcgttgtttgagctgtt 351 |||||||||||||| |||||||||| Sbjct: 2205 aagtcgaggcgttgattgagctgtt 2229
>ref|XM_838500.1| Leishmania major strain Friedlin RAD51/dmc1 protein (LMJ_1419) partial mRNA Length = 1095 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 cttctccggccgcggcgagct 224 ||||||||||||||||||||| Sbjct: 768 cttctccggccgcggcgagct 788
>gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, complete sequence Length = 184961 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 cgcacgcccgcacgcccgcac 77 ||||||||||||||||||||| Sbjct: 17617 cgcacgcccgcacgcccgcac 17597 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 cgcacgcccgcacgcccgcacgcc 80 ||||||| |||||||||||||||| Sbjct: 17625 cgcacgcacgcacgcccgcacgcc 17602
>ref|NM_131911.2| Rattus norvegicus acidic nuclear phosphoprotein 32 family, member B (Anp32b), mRNA Length = 1392 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 23 ccgctcgcccgcacgcccgcacgcc 47
>gb|AC087900.19| Mus musculus strain C57BL/6J clone rp23-171i6 map 19, complete sequence Length = 195066 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 cgcacgcccgcacgcccgcac 77 ||||||||||||||||||||| Sbjct: 119677 cgcacgcccgcacgcccgcac 119657 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 cgcacgcccgcacgcccgcacgcc 80 ||||||| |||||||||||||||| Sbjct: 119685 cgcacgcacgcacgcccgcacgcc 119662
>gb|BC005628.1| Mus musculus acidic nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:11590 IMAGE:3963541), complete cds Length = 1408 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 50 ccgctcgcccgcacgcccgcacgcc 74
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gggtggaggcggcggtgatgc 175 ||||||||||||||||||||| Sbjct: 38763 gggtggaggcggcggtgatgc 38783
>dbj|AK165807.1| Mus musculus adult male jejunal and colic lymph node cDNA, RIKEN full-length enriched library, clone:G630089G23 product:acidic nuclear phosphoprotein 32 family, member B, full insert sequence Length = 1436 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 94 ccgctcgcccgcacgcccgcacgcc 118
>gb|AF062380.1|AF062380 Leishmania major strain Friedlin Dmc1 homolog (DMC1) gene, complete cds Length = 1095 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 cttctccggccgcggcgagct 224 ||||||||||||||||||||| Sbjct: 768 cttctccggccgcggcgagct 788
>dbj|AK011134.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2600001G16 product:similar to PROLIFERATION RELATED ACIDIC LEUCINE RICH PROTEIN PAL31 [Mus musculus], full insert sequence Length = 926 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 156 ccgctcgcccgcacgcccgcacgcc 180
>gb|BC093506.1| Mus musculus acidic nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:103080 IMAGE:4917194), complete cds Length = 1297 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 14 ccgctcgcccgcacgcccgcacgcc 38
>gb|BC086508.1| Rattus norvegicus acidic nuclear phosphoprotein 32 family, member B, mRNA (cDNA clone MGC:91514 IMAGE:7103152), complete cds Length = 1392 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 23 ccgctcgcccgcacgcccgcacgcc 47
>emb|AL683884.26| Mouse DNA sequence from clone RP23-117B19 on chromosome 4, complete sequence Length = 227816 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgcc 80 |||| |||||||||||||||||||| Sbjct: 62334 ccgctcgcccgcacgcccgcacgcc 62358
>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence Length = 53591 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 cgcccgcacgcccgcacgcct 81 ||||||||||||||||||||| Sbjct: 19843 cgcccgcacgcccgcacgcct 19823
>gb|DQ222512.1| Solanum tuberosum clone 117C05 unknown mRNA Length = 1067 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ttgtttgagctgttcaagag 357 |||||||||||||||||||| Sbjct: 350 ttgtttgagctgttcaagag 369
>gb|DQ222487.1| Solanum tuberosum clone 097G01 unknown mRNA Length = 1040 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ttgtttgagctgttcaagag 357 |||||||||||||||||||| Sbjct: 329 ttgtttgagctgttcaagag 348
>ref|XM_472540.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cacgcccgcacgcctcccct 86 |||||||||||||||||||| Sbjct: 296 cacgcccgcacgcctcccct 315
>ref|NM_183217.1| Mus musculus cDNA sequence BC042698 (BC042698), mRNA Length = 1520 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cgcccgcacgcccgcacgcc 80 |||||||||||||||||||| Sbjct: 49 cgcccgcacgcccgcacgcc 30
>ref|XM_415085.1| PREDICTED: Gallus gallus similar to Golgi autoantigen, golgin subfamily a, 3; male enhanced antigen-2; SY2/SY10 protein; Golgi complex-associated protein of 170 kD; Golgi peripheral membrane protein; golgin-165; Golgi membrane associated protein; golgin-160 ... (LOC416791), mRNA Length = 5973 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gctcttctccggccgcggcg 220 |||||||||||||||||||| Sbjct: 5832 gctcttctccggccgcggcg 5851
>gb|BC042698.1| Mus musculus cDNA sequence BC042698, mRNA (cDNA clone MGC:51484 IMAGE:4014625), complete cds Length = 1520 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cgcccgcacgcccgcacgcc 80 |||||||||||||||||||| Sbjct: 49 cgcccgcacgcccgcacgcc 30
>gb|AC132293.3| Mus musculus BAC clone RP24-322H1 from chromosome 1, complete sequence Length = 158294 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cgcccgcacgcccgcacgcc 80 |||||||||||||||||||| Sbjct: 58816 cgcccgcacgcccgcacgcc 58835
>gb|BT013191.1| Lycopersicon esculentum clone 134301R, mRNA sequence Length = 1082 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ttgtttgagctgttcaagag 357 |||||||||||||||||||| Sbjct: 349 ttgtttgagctgttcaagag 368
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence Length = 144811 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cacgcccgcacgcctcccct 86 |||||||||||||||||||| Sbjct: 8935 cacgcccgcacgcctcccct 8954
>ref|XM_762680.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_448_24520_23597) partial mRNA Length = 924 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 gatccgctgcctcacctgctggcg 129 |||||||||||||||| ||||||| Sbjct: 642 gatccgctgcctcacccgctggcg 665
>ref|XM_762681.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_448_23633_24328) partial mRNA Length = 696 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 gatccgctgcctcacctgctggcg 129 |||||||||||||||| ||||||| Sbjct: 247 gatccgctgcctcacccgctggcg 224
>gb|AC117623.7| Mus musculus chromosome 1, clone RP23-114L12, complete sequence Length = 211821 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cgcccgcacgcccgcacgcc 80 |||||||||||||||||||| Sbjct: 150983 cgcccgcacgcccgcacgcc 151002
>gb|AC091503.2| Rattus norvegicus strain Brown Norway clone RP31-446A15, complete sequence Length = 178963 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 57 cgcacgcccgcacgcccgcacgcctccc 84 ||||||| ||||||| |||||||||||| Sbjct: 15857 cgcacgcacgcacgcacgcacgcctccc 15884
>gb|AC087262.2| Rattus norvegicus strain Brown Norway clone RP31-151E23, complete sequence Length = 132809 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 57 cgcacgcccgcacgcccgcacgcctccc 84 ||||||| ||||||| |||||||||||| Sbjct: 101585 cgcacgcacgcacgcacgcacgcctccc 101612
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 ctcccctgaccgccggaatccgcc 103 ||||||||||||||| |||||||| Sbjct: 92802 ctcccctgaccgccgaaatccgcc 92779
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 cgcacgcccgcacgcccgcacgcc 80 ||||||| |||||||||||||||| Sbjct: 23161 cgcacgcacgcacgcccgcacgcc 23184
>emb|CR753867.11| Zebrafish DNA sequence from clone DKEY-165I4 in linkage group 5, complete sequence Length = 125222 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 gcctcacctgctggcgctgc 133 |||||||||||||||||||| Sbjct: 42361 gcctcacctgctggcgctgc 42342
>emb|CR735112.10| Zebrafish DNA sequence from clone CH211-222C11 in linkage group 5, complete sequence Length = 156543 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 gcctcacctgctggcgctgc 133 |||||||||||||||||||| Sbjct: 63502 gcctcacctgctggcgctgc 63483
>emb|AL732483.8| Mouse DNA sequence from clone RP23-70K10 on chromosome 2, complete sequence Length = 201542 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgc 79 |||||||||||||||| ||||||| Sbjct: 174950 ccgcacgcccgcacgcacgcacgc 174973
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 cgcacgcccgcacgcccgcacgcc 80 ||||||| |||||||||||||||| Sbjct: 23580480 cgcacgcacgcacgcccgcacgcc 23580503 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cacgcccgcacgcctcccct 86 |||||||||||||||||||| Sbjct: 21359185 cacgcccgcacgcctcccct 21359204
>gb|BC039908.1| Mus musculus, clone IMAGE:2582171, mRNA Length = 2123 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cgcccgcacgcccgcacgcc 80 |||||||||||||||||||| Sbjct: 150 cgcccgcacgcccgcacgcc 131
>ref|XM_573462.1| PREDICTED: Rattus norvegicus similar to CDNA sequence BC042698 (LOC498239), mRNA Length = 1684 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 cgcccgcacgcccgcacgcc 80 |||||||||||||||||||| Sbjct: 242 cgcccgcacgcccgcacgcc 223
>gb|AC114542.9| Mus musculus chromosome 9, clone RP23-111F9, complete sequence Length = 235924 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgc 79 |||| ||||||||||||||||||| Sbjct: 99170 ccgcccgcccgcacgcccgcacgc 99193
>emb|CT030723.18| Mouse DNA sequence from clone RP23-33L24 on chromosome 16, complete sequence Length = 241451 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cagtgggtggaggcggcggtgatg 174 |||||||||||||||| ||||||| Sbjct: 64026 cagtgggtggaggcggtggtgatg 64049
>gb|AC154415.3| Mus musculus BAC clone RP24-232A21 from chromosome 16, complete sequence Length = 177893 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cagtgggtggaggcggcggtgatg 174 |||||||||||||||| ||||||| Sbjct: 80730 cagtgggtggaggcggtggtgatg 80753
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 cgcacgcccgcacgcccgcacgcc 80 ||||||| |||||||||||||||| Sbjct: 136383 cgcacgcacgcacgcccgcacgcc 136406
>emb|CT025653.7| Mouse DNA sequence from clone RP23-62D21 on chromosome 9, complete sequence Length = 256470 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 ccgcacgcccgcacgcccgcacgc 79 |||| ||||||||||||||||||| Sbjct: 168035 ccgcccgcccgcacgcccgcacgc 168058 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,982,077 Number of Sequences: 3902068 Number of extensions: 2982077 Number of successful extensions: 64314 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63806 Number of HSP's gapped (non-prelim): 488 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)