>DNAE2_COREF (Q8FRX6) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1073

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +3

Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELARGE 401
           G   H G  SG   + D P  DVVPTE AR E
Sbjct: 525 GQPRHLGIHSGGMVICDRPIADVVPTEWARME 556

>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)|
          Length = 657

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -3

Query: 190 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 101
           T+AA  + ++ VRRTA G   +S+VVS TR
Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415

>INCE_HUMAN (Q9NQS7) Inner centromere protein|
          Length = 923

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 397 PRASSVGT---TSKAGWSRTSPGPENAPRWWEMPW 302
           P+   VGT    SK   ++ SPGP ++P + + PW
Sbjct: 243 PKGQGVGTGRSASKLRIAQVSPGPRDSPAFPDSPW 277

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 400 SPRASSVGTTSKAGWSRTSPGPENAPRWW 314
           SP +SS G++  +G    SPGP  APR W
Sbjct: 174 SPASSSSGSSGSSG----SPGPSAAPRRW 198

>SYS_HUMAN (P49591) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 513

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 111 ETTSDDQGPPNAVLLTQDDQSDAAAEVTLPALLTPAVAVDEGVLRLPSHR 260
           E   DD+  P  VL   D  +DA A + +  +    + +DE +L+  + R
Sbjct: 71  EPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAER 120

>ZN446_HUMAN (Q9NWS9) Zinc finger protein 446|
          Length = 450

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
 Frame = +3

Query: 99  CRVLETTSDDQGPPNAVLLTQDDQSDAAAEVTLPALLTPAVAVDEGVLRLPSHRRP---- 266
           CR L + ++ +GPP             AA   L    TPA  V  G   +P+   P    
Sbjct: 262 CRSLRSGNESEGPPGCPEAQPPQGPGPAAWEGLSGAATPAPTVRPGTPPVPTQPTPAETR 321

Query: 267 ------------CXXXXXXXXXXXXGISHHRGAFSGPG 344
                       C             + HHR   SGPG
Sbjct: 322 LEPAATPRKPYTCEQCGRGFDWKSVFVIHHRTHTSGPG 359

>QUEF_XANOR (Q5GV34) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 271

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +3

Query: 96  SCRVLETTSDDQGPPNAVLLTQDDQSDAAAEVTLPALL 209
           S   L+ + DD GPPNA  LT   Q     EV   ALL
Sbjct: 137 SIDALDVSIDDYGPPNAAYLTAQAQ-PVVEEVLTSALL 173

>PROB_THIDA (Q3SJS7) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 374

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 117 TSDDQGPPNAVLLTQDDQSDAAAEVTLPALLTPAVAVDEGVLRLPSHRRP 266
           T+D +G  +A L    +Q  A AE     +L  + A+ EG+ RL   +RP
Sbjct: 22  TADGRGLDHAALSRWAEQIAALAEQGKEVVLVSSGAIAEGIARLGWKKRP 71

>DNAE2_CORDI (Q6NJ04) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1039

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELAR 395
           G   H G  +G   + D P  DVVPTE AR
Sbjct: 495 GQPRHLGIHAGGMVICDRPIADVVPTEWAR 524

>AGPA_RHIME (Q9X4Y1) Periplasmic alpha-galactoside-binding protein precursor|
          Length = 693

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -2

Query: 401 FPAGKLGGHDVE 366
           FPAGKLGG DVE
Sbjct: 483 FPAGKLGGRDVE 494

>DNAE2_NOCFA (Q5Z1D1) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1146

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELAR 395
           G+  H G  SG   + D P  DV P E AR
Sbjct: 586 GLPRHMGIHSGGMVICDRPIADVCPVEWAR 615

>UCRI_CHRVI (O31214) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC|
           1.10.2.2) (Rieske iron-sulfur protein) (RISP)
          Length = 207

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 400 SPRASSVGTTSKAGWSRTSPGPENAPRWWEMPWWCAH 290
           S RA + G   +A  S+  PG     +W  MP W  H
Sbjct: 50  SARARAAGAPVEADISKLEPGALLRVKWRGMPVWVVH 86

>BCCP_SHIFL (P0ABE1) Biotin carboxyl carrier protein of acetyl-CoA carboxylase|
           (BCCP)
          Length = 156

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 144 AVLLTQDDQSDAAAEVTLPALLTPAVAVDEG-VLRLP 251
           A ++ Q  QS+AAA  T+P++  PA A   G ++R P
Sbjct: 50  APMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSP 86

>BCCP_ECOLI (P0ABD8) Biotin carboxyl carrier protein of acetyl-CoA carboxylase|
           (BCCP)
          Length = 156

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 144 AVLLTQDDQSDAAAEVTLPALLTPAVAVDEG-VLRLP 251
           A ++ Q  QS+AAA  T+P++  PA A   G ++R P
Sbjct: 50  APMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSP 86

>BCCP_ECOL6 (P0ABD9) Biotin carboxyl carrier protein of acetyl-CoA carboxylase|
           (BCCP)
          Length = 156

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 144 AVLLTQDDQSDAAAEVTLPALLTPAVAVDEG-VLRLP 251
           A ++ Q  QS+AAA  T+P++  PA A   G ++R P
Sbjct: 50  APMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSP 86

>BCCP_ECO57 (P0ABE0) Biotin carboxyl carrier protein of acetyl-CoA carboxylase|
           (BCCP)
          Length = 156

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 144 AVLLTQDDQSDAAAEVTLPALLTPAVAVDEG-VLRLP 251
           A ++ Q  QS+AAA  T+P++  PA A   G ++R P
Sbjct: 50  APMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSP 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,801,550
Number of Sequences: 219361
Number of extensions: 465585
Number of successful extensions: 1490
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)