ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59f07 |
|---|---|
| Clone Library Name | barley_pub |
>ADRM1_HUMAN (Q16186) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) Length = 407 Score = 36.2 bits (82), Expect = 0.033 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Frame = +1 Query: 19 GEGHRTLRRWTGPAGSWPPSCARCWS---LPSFPSSYGAAVPMP--PARATTTASRPSHS 183 G G +L +GP GS S +R S PS +S A P P PA A+ T+ P+ S Sbjct: 188 GPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAAASATSPSPAPS 247 Query: 184 RGNGCFVAA 210 GNG AA Sbjct: 248 SGNGASTAA 256
>GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP)| Length = 1317 Score = 35.0 bits (79), Expect = 0.074 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Frame = +1 Query: 49 TGPAGSWPPSCARCWSLPSFPSSYGAAVPMPPAR--ATTTASRPSHSRGNGCFVAALRHA 222 + P + PP C P+ S Y ++ P P AR +T+ ASRPS N A HA Sbjct: 1158 SAPLSTNPPLAVACADQPNSSSDYASSDPSPCARNPSTSPASRPS----NLAISPAQLHA 1213 Query: 223 ACVGGQLRRVRRQHPPVVMLQRMSQGVTRRTPMSPKAP 336 GQ H P+ SQ + RT + + P Sbjct: 1214 TSSSGQ------SHQPM----SRSQKIRLRTKLGSRDP 1241
>ADRM1_RAT (Q9JMB5) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) Length = 407 Score = 34.3 bits (77), Expect = 0.13 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Frame = +1 Query: 19 GEGHRTLRRWTGPAGSWPPSCARCWS---LPSFPSSYGAAVPMP--PARATTTASRPSHS 183 G G +L +GP S S +R S PS +S A P P PA A+ T+ P+ S Sbjct: 188 GPGLASLLGSSGPPASSSSSSSRSQSAAVTPSSTTSSARATPAPSAPAAASATSPSPAPS 247 Query: 184 RGNGCFVAA 210 GNG AA Sbjct: 248 SGNGTSTAA 256
>ADRM1_MOUSE (Q9JKV1) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) (ARM-1) Length = 407 Score = 34.3 bits (77), Expect = 0.13 Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Frame = +1 Query: 19 GEGHRTLRRWTGPAGSWPPSCARCWS---LPSFPSSYGAAVPMP--PARATTTASRPSHS 183 G G +L +GP S S +R S PS +S A P P PA A+ T+ P+ S Sbjct: 188 GPGLASLLGSSGPPASSSSSSSRSQSAAVTPSSSTSSARATPAPSAPAAASATSPSPAPS 247 Query: 184 RGNGCFVAA 210 GNG AA Sbjct: 248 SGNGTSTAA 256
>YGER_ECOLI (Q46798) Hypothetical lipoprotein ygeR precursor| Length = 251 Score = 32.7 bits (73), Expect = 0.37 Identities = 20/64 (31%), Positives = 25/64 (39%) Frame = +1 Query: 55 PAGSWPPSCARCWSLPSFPSSYGAAVPMPPARATTTASRPSHSRGNGCFVAALRHAACVG 234 P SWPP RCW +P++ +P A S RG + A VG Sbjct: 114 PKSSWPPVGQRCW---LWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVG 170 Query: 235 GQLR 246 QLR Sbjct: 171 NQLR 174
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 31.2 bits (69), Expect = 1.1 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 6/50 (12%) Frame = +1 Query: 64 SWPPSCARCWSLP--SFPSSYGAAVPM----PPARATTTASRPSHSRGNG 195 S PP +R W+ P S PS+ AVPM PA A AS S R G Sbjct: 1238 STPPDSSRAWAAPGDSSPSTRRIAVPMSTGAAPATAIPQASLVSQERSRG 1287
>MAST2_MOUSE (Q60592) Microtubule-associated serine/threonine-protein kinase 2 (EC| 2.7.11.1) Length = 1734 Score = 31.2 bits (69), Expect = 1.1 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Frame = +1 Query: 94 SLPSFPSSYGAAVPMPPARATTTASRPSHSRGNG--CFVAALRHAACVGGQLRRVRRQHP 267 S S P S A P PPA A + PS G+G F L + +G QL R + P Sbjct: 1275 SAGSIPLSPLAHTPSPPATAASPQRSPSPLSGHGSQSFPTKLHLSPPLGRQLSRPKSAEP 1334 Query: 268 P 270 P Sbjct: 1335 P 1335
>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer| of yellow 3) Length = 2006 Score = 30.4 bits (67), Expect = 1.8 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 2/93 (2%) Frame = +1 Query: 52 GPAGSWPPSCARCWSLPSFPSSYG--AAVPMPPARATTTASRPSHSRGNGCFVAALRHAA 225 G G P C + S + G A+PMPP R R RG G +++ A Sbjct: 1112 GSTGGSQPDCHDEDNYTSALDNSGDETALPMPPTRGRGRGRRSRGGRGRGS--SSVDRAV 1169 Query: 226 CVGGQLRRVRRQHPPVVMLQRMSQGVTRRTPMS 324 VGG P + R + V + MS Sbjct: 1170 SVGGTASTTPATQPRAPRMSRGASAVAKAIAMS 1202
>KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (ELK2) (Brain-specific eag-like channel 1) (BEC1) Length = 1083 Score = 30.4 bits (67), Expect = 1.8 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 9/57 (15%) Frame = +1 Query: 46 WTGPAGSWPPSCARCWSLPSFPSS---------YGAAVPMPPARATTTASRPSHSRG 189 WT + S PP+ S PS P+S G A P+ A AT+T P S G Sbjct: 994 WTSTSDSEPPASGDLCSEPSTPASPPPSEEGARTGPAEPVSQAEATSTGEPPPGSGG 1050
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = +1 Query: 118 YGAAVPMPPARATTTASRPS-HSRGNGC----FVAALRHAACVGGQL 243 YG+AV PP A +A PS + G GC V + H AC G + Sbjct: 56 YGSAVANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPI 102
>CD8A_CANFA (P33706) T-cell surface glycoprotein CD8 alpha chain precursor| (CD8a antigen) Length = 239 Score = 30.4 bits (67), Expect = 1.8 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +1 Query: 133 PMPPARATTTASRPSHSRGNGCFVAA 210 P PP RA T AS+P RG C AA Sbjct: 147 PRPPTRAPTNASKPVSPRGETCRPAA 172
>TEAD3_MOUSE (P70210) Transcriptional enhancer factor TEF-5 (TEA domain family| member 3) (TEAD-3) (ETF-related factor 1) (ETFR-1) (DTEF-1) Length = 439 Score = 30.0 bits (66), Expect = 2.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +1 Query: 97 LPSFPSSYGAAVPMPPARATTTASRPS 177 LP +SY + P+PPA A+ TAS P+ Sbjct: 192 LPPALNSYESLAPLPPAAASATASAPA 218
>PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)| Length = 249 Score = 29.6 bits (65), Expect = 3.1 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +1 Query: 55 PAGSWPPSCARCWSLPSFPSSYGAAVPMPPARATTTASRPSHS 183 P GS+PP S P P S GA P PP A + + +++ Sbjct: 56 PGGSYPPPPPPGGSYPPPPPSTGAYAPPPPGPAIRSLPKEAYT 98
>KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (rElk2) (Brain-specific eag-like channel 1) (BEC1) Length = 1087 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 9/62 (14%) Frame = +1 Query: 31 RTLRRWTGPAGSWPPSCARCWSLPSFPSS---------YGAAVPMPPARATTTASRPSHS 183 R WT + S PP S PS P+S G P+ A AT+T P S Sbjct: 993 RATALWTSTSDSEPPGSGDLCSEPSTPASPPPPEEGARTGTPAPVSQAEATSTGEPPPGS 1052 Query: 184 RG 189 G Sbjct: 1053 GG 1054
>KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (mElk2) Length = 1087 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 9/62 (14%) Frame = +1 Query: 31 RTLRRWTGPAGSWPPSCARCWSLPSFPSS---------YGAAVPMPPARATTTASRPSHS 183 R WT + S PP S PS P+S G P+ A AT+T P S Sbjct: 993 RATALWTSTSDSEPPGSGDLCSEPSTPASPPPPEEGARTGTPAPVSQAEATSTGEPPPGS 1052 Query: 184 RG 189 G Sbjct: 1053 GG 1054
>FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hFz5) (FzE5)| Length = 585 Score = 29.6 bits (65), Expect = 3.1 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -2 Query: 156 CRPRRWHRNGGAIGGGE 106 CRPRR H++GGA+ G+ Sbjct: 539 CRPRRGHKSGGAMAAGD 555
>CFAH_HUMAN (P08603) Complement factor H precursor (H factor 1)| Length = 1231 Score = 29.6 bits (65), Expect = 3.1 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +1 Query: 13 GFGEGHRTLRRWTGPAGSWPPSCAR--CWSLPSFPSSYGAAVPM 138 GFG + + G S PPSC + C SLPSF + A+PM Sbjct: 962 GFGIDGPAIAKCLGEKWSHPPSCIKTDCLSLPSFEN----AIPM 1001
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D| (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) Length = 815 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 1 KQNRGFGEGHRTLRRWTGPAGSWPPSCARCWSLPSFPSSYGAA 129 +Q+RGFG R TG G++P + A + F +S GAA Sbjct: 766 QQSRGFGSEFRFPDAPTGTTGAFPGAAATVGGVDPFATSGGAA 808
>DLL3_MOUSE (O88516) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) (M-Delta-3) Length = 592 Score = 29.3 bits (64), Expect = 4.0 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Frame = +1 Query: 31 RTLRRWTGPAGSWPPSCARCW-SLPSFPSSYGAAVPMP-PARATTTASRPSHSRGNGCFV 204 R L WTGP + P S + C S P+S G +P P P A+ S S +G F Sbjct: 236 RCLEGWTGPLCTVPVSTSSCLNSRVPGPASTGCLLPGPGPCDGNPCANGGSCSETSGSFE 295 Query: 205 AA 210 A Sbjct: 296 CA 297
>LGE1_KLULA (Q6CVS3) Transcriptional regulatory protein LGE1| Length = 230 Score = 28.9 bits (63), Expect = 5.3 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 10/73 (13%) Frame = +1 Query: 4 QNRGFGEGHRT----LRRWTGPAGSWPP---SCARCWSLPSFPSSYGA-AVPM--PPARA 153 Q +G+G G T ++R T GS+ P S +R S ++ YG +VP PP+ A Sbjct: 57 QQQGYGYGQPTHAHGVQRQTYRGGSYHPYQHSDSRYGSNSTYRRPYGQQSVPPAPPPSTA 116 Query: 154 TTTASRPSHSRGN 192 ++ +S ++SRG+ Sbjct: 117 SSVSSSSAYSRGS 129
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%) Frame = +1 Query: 40 RRWTGPAGSWPPSCARCWSLPSF----PSSYGAAVPMPPARATTTASRPSHSR 186 RR PA +WPP C S P+ P + A P T + + P H R Sbjct: 63 RRSCSPAPTWPPLCCYPQSRPTASAAGPGACMRASGRPHGNTTASTAPPRHPR 115
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -2 Query: 144 RWHRNGGAIGGGERW 100 RW GG +GGG+RW Sbjct: 244 RWGGGGGGMGGGDRW 258
>NPDC1_MOUSE (Q64322) Neural proliferation differentiation and control protein 1| precursor (NPDC-1 protein) Length = 332 Score = 28.1 bits (61), Expect = 9.0 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 20/99 (20%) Frame = +1 Query: 100 PSFPSSYGAAVPMPPARATTTAS---------RPSHSRGNGCFV-----------AALRH 219 P PS++G + P+P ++ AS P GNG + AAL Sbjct: 148 PGLPSTHGTSSPIPHTSLSSRASSGPVQMSPLEPQGRHGNGLTLVLILAFCLASSAALAV 207 Query: 220 AACVGGQLRRVRRQHPPVVMLQRMSQGVTRRTPMSPKAP 336 AA +L+R R + Q+ T + P SP P Sbjct: 208 AALCWCRLQREIR------LTQKADYAATAKGPTSPSTP 240
>TRI16_HUMAN (O95361) Tripartite motif protein 16 (Estrogen-responsive B box| protein) Length = 564 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = -2 Query: 303 HSLTHPLQHHDWWMLPTNSPQLASYAC 223 H LT P++ H+W P + L+++ C Sbjct: 117 HLLTEPVKDHNWRYCPAHHSPLSAFCC 143
>TSSC4_MOUSE (Q9JHE7) Protein TSSC4| Length = 317 Score = 28.1 bits (61), Expect = 9.0 Identities = 19/65 (29%), Positives = 27/65 (41%) Frame = +1 Query: 133 PMPPARATTTASRPSHSRGNGCFVAALRHAACVGGQLRRVRRQHPPVVMLQRMSQGVTRR 312 P PP TTA +P H RG + H+ + L RQ P +S + R Sbjct: 63 PSPPTGTLTTAVQPFHLRGMSSTFSQRSHS--IFDCLESAARQAPCSAPQTSVSDNGSFR 120 Query: 313 TPMSP 327 P++P Sbjct: 121 RPVTP 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,682,235 Number of Sequences: 219361 Number of extensions: 1027559 Number of successful extensions: 3930 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3923 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
