Clone Name | bart59f07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_194214.1| Oryza sativa (japonica cultivar-group), mRNA Length = 909 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 56 cggcgggatcttggccgccgtcgtgtgcgcgctgctggtctttgccatctttcccctcct 115 |||||| || |||| |||||| |||||| |||||||||||| |||||||| |||||||| Sbjct: 12 cggcggcatgttgggcgccgtggtgtgcttgctgctggtcttcgccatcttccccctcct 71 Query: 116 cctatggcgccgccgttccgatgcc 140 ||| ||||||||||| ||||||||| Sbjct: 72 cctctggcgccgccgctccgatgcc 96 Score = 46.1 bits (23), Expect = 0.093 Identities = 44/51 (86%) Strand = Plus / Plus Query: 158 ccaccgcctcccgccccagccactccagggggaacgggtgcttcgtggcgg 208 |||||||||||| |||||||| ||||||| ||||| ||||| || ||||| Sbjct: 99 ccaccgcctcccaccccagccgctccaggacgaacgtgtgctccgcggcgg 149
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 56 cggcgggatcttggccgccgtcgtgtgcgcgctgctggtctttgccatctttcccctcct 115 |||||| || |||| |||||| |||||| |||||||||||| |||||||| |||||||| Sbjct: 198767 cggcggcatgttgggcgccgtggtgtgcttgctgctggtcttcgccatcttccccctcct 198708 Query: 116 cctatggcgccgccgttccgatgcc 140 ||| ||||||||||| ||||||||| Sbjct: 198707 cctctggcgccgccgctccgatgcc 198683 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 158 ccaccgcctcccgccccagccactccagg 186 |||||||||||| |||||||| ||||||| Sbjct: 198680 ccaccgcctcccaccccagccgctccagg 198652
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 56 cggcgggatcttggccgccgtcgtgtgcgcgctgctggtctttgccatctttcccctcct 115 |||||| || |||| |||||| |||||| |||||||||||| |||||||| |||||||| Sbjct: 33631 cggcggcatgttgggcgccgtggtgtgcttgctgctggtcttcgccatcttccccctcct 33572 Query: 116 cctatggcgccgccgttccgatgcc 140 ||| ||||||||||| ||||||||| Sbjct: 33571 cctctggcgccgccgctccgatgcc 33547 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 158 ccaccgcctcccgccccagccactccagg 186 |||||||||||| |||||||| ||||||| Sbjct: 33544 ccaccgcctcccaccccagccgctccagg 33516
>gb|BT017018.1| Zea mays clone EK07D2312B04.c mRNA sequence Length = 1095 Score = 87.7 bits (44), Expect = 3e-14 Identities = 97/114 (85%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 86 gctgctggtctttgccatctttcccctcctcctatggcgccgccgttccgatgccaccgg 145 |||| ||||||| |||||||| ||||||||||| ||||||||||| ||||||||| || Sbjct: 25 gctggtggtcttcgccatcttccccctcctcctctggcgccgccgctccgatgccgccac 84 Query: 146 cgcgggcgacaaccaccgcctcccgccccagccactccagggggaacgggtgct 199 ||| ||| ||||||||| ||||||||||||| ||||||| ||| | |||||| Sbjct: 85 cgc---cgataaccaccgcgtcccgccccagcccctccaggaggatcaggtgct 135
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 134 cgatgccaccggcgcgggcgac 155 |||||||||||||||||||||| Sbjct: 1266279 cgatgccaccggcgcgggcgac 1266258
>gb|AC117550.8| Mus musculus chromosome 1, clone RP24-571N3, complete sequence Length = 156349 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 338 gaaggagaggaagaggcaagagaggg 363 |||||||||||||||| ||||||||| Sbjct: 74800 gaaggagaggaagaggaaagagaggg 74825
>emb|AL731552.11| Mouse DNA sequence from clone RP23-113K24 on chromosome 2, complete sequence Length = 203304 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 354 caagagagggaagagcgggaggcaca 379 |||||||||| ||||||||||||||| Sbjct: 16951 caagagaggggagagcgggaggcaca 16976
>emb|AL844495.6| Mouse DNA sequence from clone RP23-252L9 on chromosome 2, complete sequence Length = 174818 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Minus Query: 337 agaaggagaggaagaggcaagagagggaag 366 ||||||||||||| ||||||||||| |||| Sbjct: 95596 agaaggagaggaaaaggcaagagagtgaag 95567
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 ccaccgcctcccgccccagcc 178 ||||||||||||||||||||| Sbjct: 107579 ccaccgcctcccgccccagcc 107559
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 gatgccaccggcgcgggcgac 155 ||||||||||||||||||||| Sbjct: 3790863 gatgccaccggcgcgggcgac 3790883
>gb|AC115026.16| Mus musculus chromosome 1, clone RP24-238A19, complete sequence Length = 191726 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 349 agaggcaagagagggaagagcggga 373 |||||||||||||||||||| |||| Sbjct: 53388 agaggcaagagagggaagagaggga 53412
>gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, complete sequence Length = 178437 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 349 agaggcaagagagggaagagcggga 373 |||||||||||||||||||| |||| Sbjct: 158727 agaggcaagagagggaagagaggga 158751
>gb|BC044833.1| Mus musculus RAB11 family interacting protein 5 (class I), mRNA (cDNA clone IMAGE:5356365), partial cds Length = 3666 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 644 agagggaagagcgggaggcac 624
>gb|BC051063.1| Mus musculus RAB11 family interacting protein 5 (class I), mRNA (cDNA clone IMAGE:5356365), partial cds Length = 3666 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 644 agagggaagagcgggaggcac 624
>ref|NM_177466.4| Mus musculus RAB11 family interacting protein 5 (class I) (Rab11fip5), transcript variant 2, mRNA Length = 4137 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 1115 agagggaagagcgggaggcac 1095
>ref|NM_001003955.2| Mus musculus RAB11 family interacting protein 5 (class I) (Rab11fip5), transcript variant 1, mRNA Length = 6156 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 1115 agagggaagagcgggaggcac 1095
>gb|AC162869.3| Mus musculus chromosome 1, clone RP24-309N24, complete sequence Length = 169330 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 337 agaaggagaggaagaggcaagagagggaa 365 ||||||||||||||||| | ||||||||| Sbjct: 53143 agaaggagaggaagagggaggagagggaa 53115
>gb|AC155728.13| Mus musculus 6 BAC RP24-162H1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176377 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 41978 agagggaagagcgggaggcac 41998
>gb|AC163484.4| Mus musculus chromosome 1, clone RP23-432C4, complete sequence Length = 193216 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 349 agaggcaagagagggaagagcggga 373 |||||||||||||||||||| |||| Sbjct: 190097 agaggcaagagagggaagagaggga 190073
>ref|XM_992559.1| PREDICTED: Mus musculus RAB11 family interacting protein 5 (class I) (Rab11fip5), mRNA Length = 6019 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 1039 agagggaagagcgggaggcac 1019
>gb|AC116119.12| Mus musculus chromosome 12, clone RP23-76D19, complete sequence Length = 264410 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 338 gaaggagaggaagaggcaagagagggaag 366 |||||||||||||||||||| ||| |||| Sbjct: 90496 gaaggagaggaagaggcaagggagagaag 90524
>ref|XM_540423.2| PREDICTED: Canis familiaris similar to otopetrin 3 (LOC483304), mRNA Length = 1852 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 cgtgatgttgcagaggatgag 293 ||||||||||||||||||||| Sbjct: 1681 cgtgatgttgcagaggatgag 1661
>emb|Z70225.1|HSU165H7 Human DNA sequence from clone LL0XNC01-165H7 on chromosome X, complete sequence Length = 38461 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 aagagagggaagagcgggagg 375 ||||||||||||||||||||| Sbjct: 20179 aagagagggaagagcgggagg 20159
>emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 129/Sv, complete sequence Length = 167508 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 30521 agagggaagagcgggaggcac 30541
>gb|AC007550.70| Mus musculus strain 129S6/SvEvTac chromosome 11a2 clone rp21-434h10, complete sequence Length = 199956 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 338 gaaggagaggaagaggcaagagagggaagagcgggag 374 |||||||||||||||| | |||||||| ||| ||||| Sbjct: 154192 gaaggagaggaagagggaggagagggaggagagggag 154156
>dbj|AK145061.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830034E24 product:Rab11 interacting protein Rip11 homolog [Mus musculus], full insert sequence Length = 2065 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 628 agagggaagagcgggaggcac 608
>dbj|AK154922.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630111H10 product:Rab11 interacting protein Rip11 homolog [Mus musculus], full insert sequence Length = 6104 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 1098 agagggaagagcgggaggcac 1078
>gb|AC153579.10| Mus musculus 6 BAC RP23-21F2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228481 Score = 42.1 bits (21), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 331 gctccnagaaggagaggaagaggc 354 ||||| |||||||||||||||||| Sbjct: 85289 gctcccagaaggagaggaagaggc 85266
>dbj|AK129230.1| Mus musculus mRNA for mKIAA0857 protein Length = 6119 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 agagggaagagcgggaggcac 378 ||||||||||||||||||||| Sbjct: 1115 agagggaagagcgggaggcac 1095
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 ccaccgcctcccgccccagcc 178 ||||||||||||||||||||| Sbjct: 110071 ccaccgcctcccgccccagcc 110051
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 aggaagaggcaagagagggaagag 368 |||| ||||||||||||||||||| Sbjct: 5695 aggaggaggcaagagagggaagag 5672
>gb|AC152494.1| Zea mays BAC clone Z418K17, complete sequence Length = 195448 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 236 gccagctgcggcgagttcgtcggc 259 ||||||||||||||||||| |||| Sbjct: 32490 gccagctgcggcgagttcgccggc 32467
>ref|XM_511280.1| PREDICTED: Pan troglodytes similar to ankyrin repeat and FYVE domain containing 1 isoform 1; ankyrin repeat hooked to zinc finger motif (LOC454443), mRNA Length = 4010 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 1788 agaaggagaggaagaggctagaga 1811
>ref|XM_466354.1| Oryza sativa (japonica cultivar-group), mRNA Length = 207 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 gaggaagaggcaagagaggg 363 |||||||||||||||||||| Sbjct: 143 gaggaagaggcaagagaggg 162
>gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, complete sequence Length = 184672 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 agagagggaagagcgggagg 375 |||||||||||||||||||| Sbjct: 154836 agagagggaagagcgggagg 154855
>ref|XM_616692.2| PREDICTED: Bos taurus similar to heat shock 70kDa protein 4 isoform a, transcript variant 1 (LOC536558), mRNA Length = 2842 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cgttccgatgccaccggcgcgggcgaca 156 |||| ||||||| ||||||||||||||| Sbjct: 75 cgtttcgatgccgccggcgcgggcgaca 48
>ref|XM_878478.1| PREDICTED: Bos taurus similar to heat shock 70kDa protein 4 isoform a, transcript variant 9 (LOC536558), mRNA Length = 3167 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cgttccgatgccaccggcgcgggcgaca 156 |||| ||||||| ||||||||||||||| Sbjct: 271 cgtttcgatgccgccggcgcgggcgaca 244
>ref|XM_878447.1| PREDICTED: Bos taurus similar to heat shock 70kDa protein 4 isoform a, transcript variant 8 (LOC536558), mRNA Length = 3158 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cgttccgatgccaccggcgcgggcgaca 156 |||| ||||||| ||||||||||||||| Sbjct: 271 cgtttcgatgccgccggcgcgggcgaca 244
>ref|XM_866410.1| PREDICTED: Bos taurus similar to heat shock 70kDa protein 4 isoform a, transcript variant 2 (LOC536558), mRNA Length = 3164 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cgttccgatgccaccggcgcgggcgaca 156 |||| ||||||| ||||||||||||||| Sbjct: 271 cgtttcgatgccgccggcgcgggcgaca 244
>ref|XM_878367.1| PREDICTED: Bos taurus similar to heat shock 70kDa protein 4 isoform a, transcript variant 7 (LOC536558), mRNA Length = 3071 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cgttccgatgccaccggcgcgggcgaca 156 |||| ||||||| ||||||||||||||| Sbjct: 271 cgtttcgatgccgccggcgcgggcgaca 244
>ref|XM_878246.1| PREDICTED: Bos taurus similar to heat shock 70kDa protein 4 isoform a, transcript variant 4 (LOC536558), mRNA Length = 3248 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cgttccgatgccaccggcgcgggcgaca 156 |||| ||||||| ||||||||||||||| Sbjct: 358 cgtttcgatgccgccggcgcgggcgaca 331
>ref|XM_878213.1| PREDICTED: Bos taurus similar to heat shock 70kDa protein 4 isoform a, transcript variant 3 (LOC536558), mRNA Length = 892 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 129 cgttccgatgccaccggcgcgggcgaca 156 |||| ||||||| ||||||||||||||| Sbjct: 75 cgtttcgatgccgccggcgcgggcgaca 48
>ref|NM_016376.2| Homo sapiens ankyrin repeat and FYVE domain containing 1 (ANKFY1), transcript variant 1, mRNA Length = 7414 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 2298 agaaggagaggaagaggctagaga 2321
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 aggaagaggcaagagagggaagag 368 |||| ||||||||||||||||||| Sbjct: 849160 aggaggaggcaagagagggaagag 849137
>gb|AC145198.3| Mus musculus BAC clone RP23-396H3 from chromosome 16, complete sequence Length = 201219 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gcggcgctccggcacgccgc 224 |||||||||||||||||||| Sbjct: 95885 gcggcgctccggcacgccgc 95904
>ref|XM_991569.1| PREDICTED: Mus musculus otopetrin 3 (Otop3), mRNA Length = 2360 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 1706 gtgatgttgcagaggatgag 1687
>gb|AY386264.1| Orf virus strain OV-SA00, complete genome Length = 139962 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 ccgccgtcgtgtgcgcgctgctgg 93 ||||||||||| |||||||||||| Sbjct: 129520 ccgccgtcgtgcgcgcgctgctgg 129543
>gb|AC122911.4| Mus musculus BAC clone RP23-60K16 from 8, complete sequence Length = 150400 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 337 agaaggagaggaagaggcaagagaggga 364 ||||||||||| ||||| |||||||||| Sbjct: 114807 agaaggagagggagagggaagagaggga 114780
>gb|AC139029.10| Mus musculus chromosome 14, clone RP23-393A18, complete sequence Length = 204943 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gcctcccgccccagccactc 182 |||||||||||||||||||| Sbjct: 61096 gcctcccgccccagccactc 61115
>gb|BC060812.1| Homo sapiens cDNA clone IMAGE:30339773, containing frame-shift errors Length = 5047 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 2299 agaaggagaggaagaggctagaga 2322
>emb|AL591415.9| Human DNA sequence from clone RP11-520L11 on chromosome 1, complete sequence Length = 110220 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 gaggaagaggcaagagagggaaga 367 |||||||||||||||||| ||||| Sbjct: 66473 gaggaagaggcaagagagagaaga 66450
>gb|AC101835.7| Mus musculus, clone RP23-227D7, complete sequence Length = 208667 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 337 agaaggagaggaagaggcaagagaggga 364 ||||||||||||||||| |||||||||| Sbjct: 203895 agaaggagaggaagagg-aagagaggga 203869
>emb|AL359455.22| Human DNA sequence from clone RP11-444K11 on chromosome 9 Contains part of the RGS3 gene for the regulator of G-protein signalling 3 (C2PA, RGP3, FLJ20370, PDZ-RGS3), complete sequence Length = 85763 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 aggaagaggcaagagaggga 364 |||||||||||||||||||| Sbjct: 81873 aggaagaggcaagagaggga 81892
>emb|AL158075.11| Human DNA sequence from clone RP11-348K2 on chromosome 9q33.1-34.13 Contains two novel genes and part of the NR6A1 gene for nuclear receptor (subfamily 6, group A) member 1, complete sequence Length = 102867 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 340 aggagaggaagaggcaagagagggaaga 367 ||||||||| |||||||||||| ||||| Sbjct: 18807 aggagaggaggaggcaagagagagaaga 18780
>emb|X03020.1|MMGMCSFG Mouse gene for granulocyte-macrophage colony stimulating factor (GM-CSF) Length = 3637 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cccgccccagccactccagg 186 |||||||||||||||||||| Sbjct: 802 cccgccccagccactccagg 821
>emb|CR933717.1| Homo sapiens mRNA; cDNA DKFZp686M19106 (from clone DKFZp686M19106) Length = 9358 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 4119 agaaggagaggaagaggctagaga 4142
>gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, complete sequence Length = 184805 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagagaggga 364 ||||||||||||||||| |||||||||| Sbjct: 81077 agaaggagaggaagagg-aagagaggga 81103
>emb|AL596103.22| Mouse DNA sequence from clone RP23-309E16 on chromosome 11 Contains the P4ha2 gene for procollagen-proline 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase) alpha II polypeptide, a novel pseudogene, two novel genes, a diazepam binding inhibitor (Dbi) pseudogene, the Csf2 gene for colony stimulating factor 2 (granulocyte-macrophage), the Il3 gene for interleukin 3 and a CpG island, complete sequence Length = 199500 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cccgccccagccactccagg 186 |||||||||||||||||||| Sbjct: 154396 cccgccccagccactccagg 154377
>gb|AC087742.9| Homo sapiens chromosome 17, clone RP11-104O19, complete sequence Length = 168834 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 140035 agaaggagaggaagaggctagaga 140058
>gb|AF299253.2| Pseudomonas putida strain DOT-T1E putative regulatory protein TtgW (ttgW), putative regulatory protein TtgV (ttgV), periplasmic efflux pump component TtgG (ttgG), inner membrane efflux pump component TtgH (ttgH), and outer membrane efflux pump component TtgI (ttgI) genes, complete cds Length = 9366 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ggcgacaaccaccgcctccc 169 |||||||||||||||||||| Sbjct: 1811 ggcgacaaccaccgcctccc 1830
>gb|AC087292.14| Homo sapiens chromosome 17, clone RP11-810M2, complete sequence Length = 195144 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 166887 agaaggagaggaagaggctagaga 166864
>dbj|AK091008.1| Homo sapiens cDNA FLJ33689 fis, clone BRAWH2002911 Length = 2555 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 1954 agaaggagaggaagaggctagaga 1931
>dbj|AK057047.1| Homo sapiens cDNA FLJ32485 fis, clone SKNMC2001596, highly similar to Homo sapiens mRNA for ANKHZN Length = 3352 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 2182 agaaggagaggaagaggctagaga 2205
>gb|AC140322.4| Mus musculus BAC clone RP23-413F14 from chromosome 14, complete sequence Length = 205679 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gcctcccgccccagccactc 182 |||||||||||||||||||| Sbjct: 30089 gcctcccgccccagccactc 30070
>gb|AC023302.9| Homo sapiens chromosome 15, clone RP11-28H5, complete sequence Length = 151927 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 aagaggcaagagagggaaga 367 |||||||||||||||||||| Sbjct: 110285 aagaggcaagagagggaaga 110266
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 tggacgggtccggcgggatc 65 |||||||||||||||||||| Sbjct: 3693642 tggacgggtccggcgggatc 3693661 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cgatgccaccggcgcgggcg 153 |||||||||||||||||||| Sbjct: 3345751 cgatgccaccggcgcgggcg 3345770
>gb|DQ184476.1| Orf virus strain NZ2, complete genome Length = 137820 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 ccgccgtcgtgtgcgcgctgctgg 93 ||||||||||| |||||||||||| Sbjct: 128745 ccgccgtcgtgcgcgcgctgctgg 128768
>dbj|AK043266.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730078K24 product:hypothetical protein, full insert sequence Length = 2320 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 1667 gtgatgttgcagaggatgag 1648
>dbj|AK009293.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310011E08 product:RIKEN cDNA 2310011E08 gene, full insert sequence Length = 859 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 209 gtgatgttgcagaggatgag 190
>gb|AY186732.1| Orf virus strain D1701 ankyrin-repeat protein ANK-1 (ANK-1), interleukin 10 (IL-10), ankyrin-repeat protein ANK-2 (ANK-2), ankyrin-repeat protein ANK-3 (ANK-3), vaccinia virus F10L-like protein (F10L), vaccinia virus F9L-like protein (F9L), vascular endothelial growth factor-like protein (VEGF-E), and ORF3 genes, complete cds Length = 9979 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 ccgccgtcgtgtgcgcgctgctgg 93 ||||||||||| |||||||||||| Sbjct: 2684 ccgccgtcgtgcgcgcgctgctgg 2707
>dbj|AK027953.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110033B07 product:hypothetical protein, full insert sequence Length = 777 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gcggcgctccggcacgccgc 224 |||||||||||||||||||| Sbjct: 118 gcggcgctccggcacgccgc 137
>tpg|BK000630.1| TPA: TPA_exp: Mus musculus otopetrin 3 (Otop3) mRNA, complete cds Length = 2377 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 1724 gtgatgttgcagaggatgag 1705
>tpg|BK000629.1| TPA: TPA_exp: Mus musculus otopetrin 2 (Otop2) gene, complete cds Length = 53301 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 38799 gtgatgttgcagaggatgag 38780
>gb|AC158682.8| Mus musculus 6 BAC RP23-342D13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 214029 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 ggagaggaagaggcaagagaggga 364 ||||||||||||| |||||||||| Sbjct: 55372 ggagaggaagagggaagagaggga 55395
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 aggaagaggcaagagagggaagag 368 |||| ||||||||||||||||||| Sbjct: 849158 aggaggaggcaagagagggaagag 849135
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gaggaagaggcaagagaggg 363 |||||||||||||||||||| Sbjct: 21884592 gaggaagaggcaagagaggg 21884573
>ref|NM_027132.1| Mus musculus otopetrin 3 (Otop3), mRNA Length = 2377 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 1724 gtgatgttgcagaggatgag 1705
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 aggaagaggcaagagagggaagag 368 |||| ||||||||||||||||||| Sbjct: 144705 aggaggaggcaagagagggaagag 144682
>emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chromosome 2, complete sequence Length = 195442 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 aggagaggaagaggcaagagaggg 363 ||||||||| |||||||||||||| Sbjct: 43923 aggagaggaggaggcaagagaggg 43946
>dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689H05 Length = 135803 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gaggaagaggcaagagaggg 363 |||||||||||||||||||| Sbjct: 67877 gaggaagaggcaagagaggg 67858
>dbj|AK025483.1| Homo sapiens cDNA: FLJ21830 fis, clone HEP01485, highly similar to AB037360 Homo sapiens mRNA for ANKHZN Length = 3436 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 2298 agaaggagaggaagaggctagaga 2321
>gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence Length = 147102 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 ccccaatgtccccaaaggct 333 |||||||||||||||||||| Sbjct: 111582 ccccaatgtccccaaaggct 111601
>gb|AF061937.1|AF061937 Pseudomonas putida efflux pump regulator SrpS (srpS) and efflux pump regulator SrpR (srpR) genes, complete cds Length = 1566 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ggcgacaaccaccgcctccc 169 |||||||||||||||||||| Sbjct: 1112 ggcgacaaccaccgcctccc 1093
>gb|AF063586.1|AF063586 Homo sapiens glial derived neurotrophic factor (GDNF) gene, partial cds Length = 7892 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cggcgggatcttggccgccg 75 |||||||||||||||||||| Sbjct: 2372 cggcgggatcttggccgccg 2391
>dbj|AB087505.1| Mus musculus mRNA for hypothetical protein containing twelve transmembrane-spanning domain, complete cds Length = 2343 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 1667 gtgatgttgcagaggatgag 1648
>dbj|AB087501.1| Mus musculus js genes for Jackson shaker and hypothetical protein, complete and partial cds Length = 72195 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 68086 gtgatgttgcagaggatgag 68067
>emb|CT030238.7| Mouse DNA sequence from clone RP23-428E20 on chromosome 14, complete sequence Length = 194408 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 agaggaagaggcaagagagg 362 |||||||||||||||||||| Sbjct: 47367 agaggaagaggcaagagagg 47348
>emb|AL603828.9| Mouse DNA sequence from clone RP23-117K15 on chromosome 11, complete sequence Length = 210982 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgatgttgcagaggatgag 293 |||||||||||||||||||| Sbjct: 146021 gtgatgttgcagaggatgag 146002
>emb|CT010569.11| Mouse DNA sequence from clone RP23-237G24 on chromosome 16, complete sequence Length = 238459 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 ggagaggaagaggcaagagaggga 364 ||||||||||||| |||||||||| Sbjct: 160640 ggagaggaagagggaagagaggga 160663
>gb|AC154239.3| Mus musculus BAC clone RP24-164C12 from chromosome 14, complete sequence Length = 161815 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 agaaggagaggaagaggcaagagagggaagag 368 |||||||||||||| | |||||||||||||| Sbjct: 80323 agaaggagaggaaggaggaagagagggaagag 80292
>emb|AL512802.2|CNS07EFG Human chromosome 14 DNA sequence BAC C-2319J18 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 97862 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 accgcctcccgccccagccactcc 183 ||||||||||||||||||| |||| Sbjct: 55265 accgcctcccgccccagcccctcc 55288
>dbj|AB037360.1| Homo sapiens mRNA for ANKHZN, complete cds Length = 5921 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 2283 agaaggagaggaagaggctagaga 2306
>dbj|AB033081.2| Homo sapiens mRNA for KIAA1255 protein, partial cds Length = 6457 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 agaaggagaggaagaggcaagaga 360 |||||||||||||||||| ||||| Sbjct: 2526 agaaggagaggaagaggctagaga 2549 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,115,618 Number of Sequences: 3902068 Number of extensions: 3115618 Number of successful extensions: 79886 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 79379 Number of HSP's gapped (non-prelim): 508 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)