ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart59f06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 236 cgccaacccgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctc 295 |||| ||||||| ||||||| | |||||||| ||||| ||| ||||||||||||| || Sbjct: 11429343 cgccgacccgcggccggacgccgccggcgtgagctccacggacgtcaccgtcgacgcgtc 11429402 Query: 296 ccgcggcatctgggcgcgcgtcttcgcccc 325 ||||||| ||||||||||||||||| |||| Sbjct: 11429403 ccgcggcctctgggcgcgcgtcttcacccc 11429432 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcgg 373 |||||||||||||||||||||||||| Sbjct: 5846741 cccgtcgtcgtgtactaccacggcgg 5846766 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcgcg 383 |||||| |||| |||| ||||||||||||||||||| Sbjct: 11429485 cccgtcatcgtctacttccacggcggcggcttcgcg 11429520 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgtgtactaccacggcggcggcttc 380 ||||||||| |||||||||||||||| Sbjct: 5824599 tcgtgtacttccacggcggcggcttc 5824624
>dbj|AP006164.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1386G10 Length = 121827 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 236 cgccaacccgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctc 295 |||| ||||||| ||||||| | |||||||| ||||| ||| ||||||||||||| || Sbjct: 117052 cgccgacccgcggccggacgccgccggcgtgagctccacggacgtcaccgtcgacgcgtc 117111 Query: 296 ccgcggcatctgggcgcgcgtcttcgcccc 325 ||||||| ||||||||||||||||| |||| Sbjct: 117112 ccgcggcctctgggcgcgcgtcttcacccc 117141 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcgcg 383 |||||| |||| |||| ||||||||||||||||||| Sbjct: 117194 cccgtcatcgtctacttccacggcggcggcttcgcg 117229
>dbj|AK106075.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H11, full insert sequence Length = 1312 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 236 cgccaacccgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctc 295 |||| ||||||| ||||||| | |||||||| ||||| ||| ||||||||||||| || Sbjct: 208 cgccgacccgcggccggacgccgccggcgtgagctccacggacgtcaccgtcgacgcgtc 267 Query: 296 ccgcggcatctgggcgcgcgtcttcgcccc 325 ||||||| ||||||||||||||||| |||| Sbjct: 268 ccgcggcctctgggcgcgcgtcttcacccc 297 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcgcg 383 |||||| |||| |||| ||||||||||||||||||| Sbjct: 350 cccgtcatcgtctacttccacggcggcggcttcgcg 385
>dbj|AK099262.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004G05, full insert sequence Length = 1371 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 236 cgccaacccgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctc 295 |||| ||||||| ||||||| | |||||||| ||||| ||| ||||||||||||| || Sbjct: 220 cgccgacccgcggccggacgccgccggcgtgagctccacggacgtcaccgtcgacgcgtc 279 Query: 296 ccgcggcatctgggcgcgcgtcttcgcccc 325 ||||||| ||||||||||||||||| |||| Sbjct: 280 ccgcggcctctgggcgcgcgtcttcacccc 309 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcgcg 383 |||||| |||| |||| ||||||||||||||||||| Sbjct: 362 cccgtcatcgtctacttccacggcggcggcttcgcg 397
>dbj|AK070763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066M03, full insert sequence Length = 1378 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 236 cgccaacccgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctc 295 |||| ||||||| ||||||| | |||||||| ||||| ||| ||||||||||||| || Sbjct: 245 cgccgacccgcggccggacgccgccggcgtgagctccacggacgtcaccgtcgacgcgtc 304 Query: 296 ccgcggcatctgggcgcgcgtcttcgcccc 325 ||||||| ||||||||||||||||| |||| Sbjct: 305 ccgcggcctctgggcgcgcgtcttcacccc 334 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcgcg 383 |||||| |||| |||| ||||||||||||||||||| Sbjct: 387 cccgtcatcgtctacttccacggcggcggcttcgcg 422
>ref|XM_479313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1044 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 259 ccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgtct 318 ||||||| |||||| |||| ||||| |||||||||| |||||| ||||||||||||||| Sbjct: 164 ccggcgtccgctccgtcgacgtcaccatcgacgcctcacgcggcctctgggcgcgcgtct 223 Query: 319 tcgccccg 326 || ||||| Sbjct: 224 tctccccg 231 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 351 gtcgtcgtgtactaccacggcggcggcttcgcgctcttctcc 392 |||||||| | || ||||||||||||||||| |||||||||| Sbjct: 268 gtcgtcgtcttcttccacggcggcggcttcgtgctcttctcc 309
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 259 ccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgtct 318 ||||||| |||||| |||| ||||| |||||||||| |||||| ||||||||||||||| Sbjct: 26726672 ccggcgtccgctccgtcgacgtcaccatcgacgcctcacgcggcctctgggcgcgcgtct 26726731 Query: 319 tcgccccg 326 || ||||| Sbjct: 26726732 tctccccg 26726739 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctc 386 |||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct: 26738143 gccgctccccgtcgtcgtctacttccacggcggcggcttcgcgctc 26738098 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 259 ccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgt 316 ||||||| |||||| |||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 26730734 ccggcgtccgctccgtcgacgtcaccatcgacgcctcccgcggcctctgggcgcgcgt 26730677 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 357 gtgtactaccacggcggcggcttcgcgctcttctccccggccatcggccccttcaacggc 416 |||||||||||||||||||| |||||||| ||||| ||||| | | || ||| ||||| Sbjct: 26743527 gtgtactaccacggcggcgggttcgcgctgttctcgccggcggtggcgccgttcgacggc 26743468 Query: 417 gtgtgccgccgcctctgcagcgacgtcggcgccgtggtcgt 457 ||||||||| | || ||| ||||||| |||| ||| ||||| Sbjct: 26743467 gtgtgccgcaggctgtgcggcgacgttggcgtcgtcgtcgt 26743427 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 267 cgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgtcttcgc 322 ||||||| |||||||||| |||||||| | |||||| ||||||||||||| ||||| Sbjct: 26743626 cgctccttcgacttcaccatcgacgccgcgcgcggcctctgggcgcgcgtgttcgc 26743571 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 334 cggcggtgccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctcttctccc 393 |||||||| ||| || |||||||| |||| ||||||||||||||||| |||||||||| Sbjct: 26730653 cggcggtgaagctcccggtcgtcgtctacttccacggcggcggcttcgtgctcttctccg 26730594 Query: 394 cggc 397 |||| Sbjct: 26730593 cggc 26730590 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 115 tgccgctgggggtgcggctccagctggcggggctcacggcggccatcgacgccgtggagc 174 |||||||||| || ||||||||||| |||||| ||||||| |||||||| ||||||| Sbjct: 26743787 tgccgctgggcctgaggctccagctgatcgggctctcggcggcgatcgacgcggtggagc 26743728 Query: 175 gcagcgacggcaccgtcaaccgc 197 | ||||||| || ||||||||| Sbjct: 26743727 ggcgcgacgggacggtcaaccgc 26743705 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcgcgctcttctccccggcc 398 ||||||||||| |||| |||||||||||||||| |||| |||||| ||||| Sbjct: 26740651 cccgtcgtcgtctacttccacggcggcggcttcacgctgttctccgcggcc 26740601 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 167 cgtggagcgcagcgacggcaccgtcaaccgctgcctct 204 |||| ||||| ||||||||||||||||||||| ||||| Sbjct: 26738323 cgtgcagcgcggcgacggcaccgtcaaccgcttcctct 26738286 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 244 cgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggca 303 |||||||||||| | |||||| |||||| ||| ||||||||||||| |||||||| Sbjct: 26738252 cgcgcccggacgcccacggcgtccgctccggcgatgtcaccgtcgacgcgtcccgcgggc 26738193 Query: 304 tctgggcgcgcgtcttcgcccc 325 | ||||||||||| ||| |||| Sbjct: 26738192 tgtgggcgcgcgtgttctcccc 26738171 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 351 gtcgtcgtgtactaccacggcggcggcttcgcgctcttctcc 392 |||||||| | || ||||||||||||||||| |||||||||| Sbjct: 26726776 gtcgtcgtcttcttccacggcggcggcttcgtgctcttctcc 26726817 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 280 tcaccgtcgacgcctcccgcggcatctgggcgcgcgt 316 ||||||||||||| || |||||| ||||||||||||| Sbjct: 26740716 tcaccgtcgacgcttcgcgcggcctctgggcgcgcgt 26740680 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||||||||| |||||||||| ||||| Sbjct: 20546379 cccgtcgtcgtgtacttccacggcggctgcttc 20546347 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 178 gcgacggcaccgtcaaccgctgcctc 203 ||||||||||||||||||||| |||| Sbjct: 24878401 gcgacggcaccgtcaaccgcttcctc 24878426 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||| |||| |||||||||||||||| Sbjct: 3365999 cccgtcgtcgcctacttccacggcggcggcttc 3365967
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_C06 Length = 143168 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 259 ccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgtct 318 ||||||| |||||| |||| ||||| |||||||||| |||||| ||||||||||||||| Sbjct: 73529 ccggcgtccgctccgtcgacgtcaccatcgacgcctcacgcggcctctgggcgcgcgtct 73588 Query: 319 tcgccccg 326 || ||||| Sbjct: 73589 tctccccg 73596 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctc 386 |||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct: 85000 gccgctccccgtcgtcgtctacttccacggcggcggcttcgcgctc 84955 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 259 ccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgt 316 ||||||| |||||| |||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 77591 ccggcgtccgctccgtcgacgtcaccatcgacgcctcccgcggcctctgggcgcgcgt 77534 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 357 gtgtactaccacggcggcggcttcgcgctcttctccccggccatcggccccttcaacggc 416 |||||||||||||||||||| |||||||| ||||| ||||| | | || ||| ||||| Sbjct: 90384 gtgtactaccacggcggcgggttcgcgctgttctcgccggcggtggcgccgttcgacggc 90325 Query: 417 gtgtgccgccgcctctgcagcgacgtcggcgccgtggtcgt 457 ||||||||| | || ||| ||||||| |||| ||| ||||| Sbjct: 90324 gtgtgccgcaggctgtgcggcgacgttggcgtcgtcgtcgt 90284 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 267 cgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgtcttcgc 322 ||||||| |||||||||| |||||||| | |||||| ||||||||||||| ||||| Sbjct: 90483 cgctccttcgacttcaccatcgacgccgcgcgcggcctctgggcgcgcgtgttcgc 90428 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 334 cggcggtgccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctcttctccc 393 |||||||| ||| || |||||||| |||| ||||||||||||||||| |||||||||| Sbjct: 77510 cggcggtgaagctcccggtcgtcgtctacttccacggcggcggcttcgtgctcttctccg 77451 Query: 394 cggc 397 |||| Sbjct: 77450 cggc 77447 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 115 tgccgctgggggtgcggctccagctggcggggctcacggcggccatcgacgccgtggagc 174 |||||||||| || ||||||||||| |||||| ||||||| |||||||| ||||||| Sbjct: 90644 tgccgctgggcctgaggctccagctgatcgggctctcggcggcgatcgacgcggtggagc 90585 Query: 175 gcagcgacggcaccgtcaaccgc 197 | ||||||| || ||||||||| Sbjct: 90584 ggcgcgacgggacggtcaaccgc 90562 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcgcgctcttctccccggcc 398 ||||||||||| |||| |||||||||||||||| |||| |||||| ||||| Sbjct: 87508 cccgtcgtcgtctacttccacggcggcggcttcacgctgttctccgcggcc 87458 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 167 cgtggagcgcagcgacggcaccgtcaaccgctgcctct 204 |||| ||||| ||||||||||||||||||||| ||||| Sbjct: 85180 cgtgcagcgcggcgacggcaccgtcaaccgcttcctct 85143 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 244 cgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggca 303 |||||||||||| | |||||| |||||| ||| ||||||||||||| |||||||| Sbjct: 85109 cgcgcccggacgcccacggcgtccgctccggcgatgtcaccgtcgacgcgtcccgcgggc 85050 Query: 304 tctgggcgcgcgtcttcgcccc 325 | ||||||||||| ||| |||| Sbjct: 85049 tgtgggcgcgcgtgttctcccc 85028 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 351 gtcgtcgtgtactaccacggcggcggcttcgcgctcttctcc 392 |||||||| | || ||||||||||||||||| |||||||||| Sbjct: 73633 gtcgtcgtcttcttccacggcggcggcttcgtgctcttctcc 73674 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 280 tcaccgtcgacgcctcccgcggcatctgggcgcgcgt 316 ||||||||||||| || |||||| ||||||||||||| Sbjct: 87573 tcaccgtcgacgcttcgcgcggcctctgggcgcgcgt 87537
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 259 ccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgtct 318 ||||||| |||||| |||| ||||| |||||||||| |||||| ||||||||||||||| Sbjct: 144276 ccggcgtccgctccgtcgacgtcaccatcgacgcctcacgcggcctctgggcgcgcgtct 144335 Query: 319 tcgccccg 326 || ||||| Sbjct: 144336 tctccccg 144343 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 351 gtcgtcgtgtactaccacggcggcggcttcgcgctcttctcc 392 |||||||| | || ||||||||||||||||| |||||||||| Sbjct: 144380 gtcgtcgtcttcttccacggcggcggcttcgtgctcttctcc 144421
>ref|NM_188843.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1165 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctc 386 |||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct: 312 gccgctccccgtcgtcgtctacttccacggcggcggcttcgcgctc 357 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 244 cgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggca 303 |||||||||||| | |||||| |||||| ||| ||||||||||||| |||||||| Sbjct: 203 cgcgcccggacgcccacggcgtccgctccggcgatgtcaccgtcgacgcgtcccgcgggc 262 Query: 304 tctgggcgcgcgtcttcgcccc 325 | ||||||||||| ||| |||| Sbjct: 263 tgtgggcgcgcgtgttctcccc 284 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 167 cgtggagcgcagcgacggcaccgtcaaccgctgcctct 204 |||| ||||| ||||||||||||||||||||| ||||| Sbjct: 132 cgtgcagcgcggcgacggcaccgtcaaccgcttcctct 169
>ref|NM_188838.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1684 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 259 ccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgt 316 ||||||| |||||| |||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 250 ccggcgtccgctccgtcgacgtcaccatcgacgcctcccgcggcctctgggcgcgcgt 307 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 334 cggcggtgccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctcttctccc 393 |||||||| ||| || |||||||| |||| ||||||||||||||||| |||||||||| Sbjct: 331 cggcggtgaagctcccggtcgtcgtctacttccacggcggcggcttcgtgctcttctccg 390 Query: 394 cggc 397 |||| Sbjct: 391 cggc 394
>dbj|AK109437.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-B02, full insert sequence Length = 1171 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctc 386 |||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct: 318 gccgctccccgtcgtcgtctacttccacggcggcggcttcgcgctc 363 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 244 cgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggca 303 |||||||||||| | |||||| |||||| ||| ||||||||||||| |||||||| Sbjct: 209 cgcgcccggacgcccacggcgtccgctccggcgatgtcaccgtcgacgcgtcccgcgggc 268 Query: 304 tctgggcgcgcgtcttcgcccc 325 | ||||||||||| ||| |||| Sbjct: 269 tgtgggcgcgcgtgttctcccc 290 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 167 cgtggagcgcagcgacggcaccgtcaaccgctgcctct 204 |||| ||||| ||||||||||||||||||||| ||||| Sbjct: 138 cgtgcagcgcggcgacggcaccgtcaaccgcttcctct 175
>dbj|AK111373.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A08, full insert sequence Length = 1139 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctc 386 |||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct: 748 gccgctccccgtcgtcgtctacttccacggcggcggcttcgcgctc 703 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 167 cgtggagcgcagcgacggcaccgtcaaccgctgcctct 204 |||| ||||| ||||||||||||||||||||| ||||| Sbjct: 928 cgtgcagcgcggcgacggcaccgtcaaccgcttcctct 891 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 244 cgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggca 303 |||||||||||| | |||||| |||||| ||| ||||||||||||| |||||||| Sbjct: 857 cgcgcccggacgcccacggcgtccgctccggcgatgtcaccgtcgacgcgtcccgcgggc 798 Query: 304 tctgggcgcgcgtcttcgcccc 325 | ||||||||||| ||| |||| Sbjct: 797 tgtgggcgcgcgtgttctcccc 776
>dbj|AK109004.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H02, full insert sequence Length = 1684 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 259 ccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgt 316 ||||||| |||||| |||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 250 ccggcgtccgctccgtcgacgtcaccatcgacgcctcccgcggcctctgggcgcgcgt 307 Score = 63.9 bits (32), Expect = 4e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 334 cggcggtgccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctcttctccc 393 |||||||| ||| || |||||||| |||| ||||||||||||||||| |||||||||| Sbjct: 331 cggcggtgaagctcccggtcgtcgtctacttccacggcggcggcttcgtgctcttctccg 390 Query: 394 cggc 397 |||| Sbjct: 391 cggc 394
>dbj|AK061012.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B04, full insert sequence Length = 1165 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcgctc 386 |||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct: 312 gccgctccccgtcgtcgtctacttccacggcggcggcttcgcgctc 357 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Plus Query: 244 cgcgcccggacggctccggcgtgcgctcctacgacttcaccgtcgacgcctcccgcggca 303 |||||||||||| | |||||| |||||| ||| ||||||||||||| |||||||| Sbjct: 203 cgcgcccggacgcccacggcgtccgctccggcgatgtcaccgtcgacgcgtcccgcgggc 262 Query: 304 tctgggcgcgcgtcttcgcccc 325 | ||||||||||| ||| |||| Sbjct: 263 tgtgggcgcgcgtgttctcccc 284 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 167 cgtggagcgcagcgacggcaccgtcaaccgctgcctct 204 |||| ||||| ||||||||||||||||||||| ||||| Sbjct: 132 cgtgcagcgcggcgacggcaccgtcaaccgcttcctct 169
>ref|XM_479314.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1320 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 357 gtgtactaccacggcggcggcttcgcgctcttctccccggccatcggccccttcaacggc 416 |||||||||||||||||||| |||||||| ||||| ||||| | | || ||| ||||| Sbjct: 406 gtgtactaccacggcggcgggttcgcgctgttctcgccggcggtggcgccgttcgacggc 465 Query: 417 gtgtgccgccgcctctgcagcgacgtcggcgccgtggtcgt 457 ||||||||| | || ||| ||||||| |||| ||| ||||| Sbjct: 466 gtgtgccgcaggctgtgcggcgacgttggcgtcgtcgtcgt 506 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 267 cgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgtcttcgc 322 ||||||| |||||||||| |||||||| | |||||| ||||||||||||| ||||| Sbjct: 307 cgctccttcgacttcaccatcgacgccgcgcgcggcctctgggcgcgcgtgttcgc 362 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 115 tgccgctgggggtgcggctccagctggcggggctcacggcggccatcgacgccgtggagc 174 |||||||||| || ||||||||||| |||||| ||||||| |||||||| ||||||| Sbjct: 146 tgccgctgggcctgaggctccagctgatcgggctctcggcggcgatcgacgcggtggagc 205 Query: 175 gcagcgacggcaccgtcaaccgc 197 | ||||||| || ||||||||| Sbjct: 206 ggcgcgacgggacggtcaaccgc 228
>dbj|AK109637.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E04, full insert sequence Length = 1320 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 357 gtgtactaccacggcggcggcttcgcgctcttctccccggccatcggccccttcaacggc 416 |||||||||||||||||||| |||||||| ||||| ||||| | | || ||| ||||| Sbjct: 406 gtgtactaccacggcggcgggttcgcgctgttctcgccggcggtggcgccgttcgacggc 465 Query: 417 gtgtgccgccgcctctgcagcgacgtcggcgccgtggtcgt 457 ||||||||| | || ||| ||||||| |||| ||| ||||| Sbjct: 466 gtgtgccgcaggctgtgcggcgacgttggcgtcgtcgtcgt 506 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 267 cgctcctacgacttcaccgtcgacgcctcccgcggcatctgggcgcgcgtcttcgc 322 ||||||| |||||||||| |||||||| | |||||| ||||||||||||| ||||| Sbjct: 307 cgctccttcgacttcaccatcgacgccgcgcgcggcctctgggcgcgcgtgttcgc 362 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 115 tgccgctgggggtgcggctccagctggcggggctcacggcggccatcgacgccgtggagc 174 |||||||||| || ||||||||||| |||||| ||||||| |||||||| ||||||| Sbjct: 146 tgccgctgggcctgaggctccagctgatcgggctctcggcggcgatcgacgcggtggagc 205 Query: 175 gcagcgacggcaccgtcaaccgc 197 | ||||||| || ||||||||| Sbjct: 206 ggcgcgacgggacggtcaaccgc 228
>ref|NM_188844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1041 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcgcgctcttctccccggcc 398 ||||||||||| |||| |||||||||||||||| |||| |||||| ||||| Sbjct: 262 cccgtcgtcgtctacttccacggcggcggcttcacgctgttctccgcggcc 312 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 280 tcaccgtcgacgcctcccgcggcatctgggcgcgcgt 316 ||||||||||||| || |||||| ||||||||||||| Sbjct: 197 tcaccgtcgacgcttcgcgcggcctctgggcgcgcgt 233
>ref|XM_482926.1| Oryza sativa (japonica cultivar-group), mRNA Length = 990 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcg 381 |||||||||||||||| ||||||||||||||||| Sbjct: 217 cccgtcgtcgtgtacttccacggcggcggcttcg 250
>gb|BT018514.1| Zea mays clone EL01N0430E04.d mRNA sequence Length = 1271 Score = 60.0 bits (30), Expect = 7e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 344 gctgcccgtcgtcgtgtactaccacggcggcggcttcg 381 ||||||||||||||||||| ||||||||||||||||| Sbjct: 299 gctgcccgtcgtcgtgtacgtccacggcggcggcttcg 336
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcg 381 |||||||||||||||| ||||||||||||||||| Sbjct: 23402163 cccgtcgtcgtgtacttccacggcggcggcttcg 23402130 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 344 gctgcccgtcgtcgtgtactaccacggcgg 373 ||||||||||||||||||| ||||||||| Sbjct: 23410147 gctgcccgtcgtcgtgtacctccacggcgg 23410176 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 360 tactaccacggcggcggcttcgcgctcttctcc 392 |||| ||||||||||||||||| ||||||||| Sbjct: 27467504 tacttccacggcggcggcttcgtcctcttctcc 27467472
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451G12 Length = 142182 Score = 60.0 bits (30), Expect = 7e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttcg 381 |||||||||||||||| ||||||||||||||||| Sbjct: 84000 cccgtcgtcgtgtacttccacggcggcggcttcg 83967 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 344 gctgcccgtcgtcgtgtactaccacggcgg 373 ||||||||||||||||||| ||||||||| Sbjct: 91984 gctgcccgtcgtcgtgtacctccacggcgg 92013
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||||| |||| ||||||||||||||||||||| Sbjct: 1484774 gccgctgcccgtgctcgtctactaccacggcggcggcttc 1484735
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||||| |||| ||||||||||||||||||||| Sbjct: 2715289 gccgctgcccgtgctcgtctactaccacggcggcggcttc 2715250
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||||| |||| ||||||||||||||||||||| Sbjct: 1668180 gccgctgcccgtgctcgtctactaccacggcggcggcttc 1668219
>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24, complete sequence Length = 136104 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 89031 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 89073 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 57715 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 57757
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 57711 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 57753 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 26395 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 26437
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 7413083 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 7413041 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 7381767 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 7381725
>dbj|AK120858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024E02, full insert sequence Length = 1315 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 237 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 279
>dbj|AK061589.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G12, full insert sequence Length = 1437 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 359 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 401
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 7483169 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 7483127 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttcgcg 383 ||||||||||||||| |||| || |||||||||||| |||||| Sbjct: 7451853 gccgctgcccgtcgtggtgttcttccacggcggcgggttcgcg 7451811
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcgg 373 |||||||||||||||||||||||||| Sbjct: 162270 cccgtcgtcgtgtactaccacggcgg 162295 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgtgtactaccacggcggcggcttc 380 ||||||||| |||||||||||||||| Sbjct: 140128 tcgtgtacttccacggcggcggcttc 140153
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcgg 373 |||||||||||||||||||||||||| Sbjct: 47516 cccgtcgtcgtgtactaccacggcgg 47541 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgtgtactaccacggcggcggcttc 380 ||||||||| |||||||||||||||| Sbjct: 25374 tcgtgtacttccacggcggcggcttc 25399
>dbj|AK109407.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C01, full insert sequence Length = 1270 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcgg 373 |||||||||||||||||||||||||| Sbjct: 315 cccgtcgtcgtgtactaccacggcgg 340
>dbj|AK109351.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G08, full insert sequence Length = 1265 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcgg 373 |||||||||||||||||||||||||| Sbjct: 310 cccgtcgtcgtgtactaccacggcgg 335
>dbj|AK098967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084E12, full insert sequence Length = 1264 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcgg 373 |||||||||||||||||||||||||| Sbjct: 313 cccgtcgtcgtgtactaccacggcgg 338
>dbj|AK070299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047F19, full insert sequence Length = 1315 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcgg 373 |||||||||||||||||||||||||| Sbjct: 364 cccgtcgtcgtgtactaccacggcgg 389
>ref|XM_478487.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1320 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||||||||| |||||||||| ||||| Sbjct: 247 cccgtcgtcgtgtacttccacggcggctgcttc 279
>dbj|AP005169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077J18 Length = 180944 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||||||||| |||||||||| ||||| Sbjct: 127489 cccgtcgtcgtgtacttccacggcggctgcttc 127457
>dbj|AP004990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0007H12 Length = 150881 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||||||||| |||||||||| ||||| Sbjct: 37458 cccgtcgtcgtgtacttccacggcggctgcttc 37426
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 357 gtgtactaccacggcggcggcttc 380 |||||||||||||||||||||||| Sbjct: 2410199 gtgtactaccacggcggcggcttc 2410222
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Minus Query: 342 ccgctgcccgtcgtcgtgtactaccacggcggcggcttcg 381 ||||| ||||||||||||||| ||||||||| ||||||| Sbjct: 1578967 ccgctccccgtcgtcgtgtacgcccacggcggtggcttcg 1578928
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 343 cgctgcccgtcgtcgtgtactaccacggcggcggcttcg 381 ||||||||||||| | |||| ||||||||||||||||| Sbjct: 2591225 cgctgcccgtcgtgctttacttccacggcggcggcttcg 2591187 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 ggtgccgctgcccgtcgtcgt 358 ||||||||||||||||||||| Sbjct: 750026 ggtgccgctgcccgtcgtcgt 750046
>ref|XM_482928.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 344 gctgcccgtcgtcgtgtactaccacggcgg 373 ||||||||||||||||||| ||||||||| Sbjct: 216 gctgcccgtcgtcgtgtacctccacggcgg 245
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 344 gctgcccgtcgtcgtgtactaccacggcggcggcttcg 381 ||||||||||||| | || | ||||||||||||||||| Sbjct: 4121489 gctgcccgtcgtcctctatttccacggcggcggcttcg 4121452
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgtgtactaccacggcggcggcttc 380 ||||||||| |||||||||||||||| Sbjct: 17370161 tcgtgtacttccacggcggcggcttc 17370186 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 140 ggcggggctcacggcggccatc 161 |||||||||||||||||||||| Sbjct: 1868550 ggcggggctcacggcggccatc 1868529 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 368 cggcggcggcttcgcgctcttctcc 392 |||||||||| |||||||||||||| Sbjct: 20230763 cggcggcggcatcgcgctcttctcc 20230739
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 178 gcgacggcaccgtcaaccgctgcctc 203 ||||||||||||||||||||| |||| Sbjct: 62033 gcgacggcaccgtcaaccgcttcctc 62058
>gb|AF244574.1|AF244574 Streptomyces spectabilis spectinomycin resistance gene cluster, complete sequence Length = 5548 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 gcgcccggacggctccggcgtgcgct 270 |||||||| ||||||||||||||||| Sbjct: 2640 gcgcccgggcggctccggcgtgcgct 2665
>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0054F02 Length = 180651 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgtgtactaccacggcggcggcttc 380 ||||||||| |||||||||||||||| Sbjct: 94074 tcgtgtacttccacggcggcggcttc 94099
>dbj|AP005725.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0025H18 Length = 176201 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 140 ggcggggctcacggcggccatc 161 |||||||||||||||||||||| Sbjct: 17718 ggcggggctcacggcggccatc 17697
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 178 gcgacggcaccgtcaaccgctgcctc 203 ||||||||||||||||||||| |||| Sbjct: 112852 gcgacggcaccgtcaaccgcttcctc 112877
>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1227_D07 Length = 118358 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 140 ggcggggctcacggcggccatc 161 |||||||||||||||||||||| Sbjct: 107212 ggcggggctcacggcggccatc 107191
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 344 gctgcccgtcgtcgtgtactaccacggcgg 373 ||||||||||||||||||| ||||||||| Sbjct: 1562 gctgcccgtcgtcgtgtacctccacggcgg 1591
>dbj|AK109579.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-A03, full insert sequence Length = 1204 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 178 gcgacggcaccgtcaaccgctgcctc 203 ||||||||||||||||||||| |||| Sbjct: 166 gcgacggcaccgtcaaccgcttcctc 191
>dbj|AK108359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C08, full insert sequence Length = 1059 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgtgtactaccacggcggcggcttc 380 ||||||||| |||||||||||||||| Sbjct: 249 tcgtgtacttccacggcggcggcttc 274
>dbj|AK108107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B08, full insert sequence Length = 1131 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgtgtactaccacggcggcggcttc 380 ||||||||| |||||||||||||||| Sbjct: 286 tcgtgtacttccacggcggcggcttc 311
>gb|AF170704.1|AF170704 Streptomyces spectabilis SpcC (spcC) gene, partial cds; SpcB (spcB), SpcA (spcA), SpcT (spcT), SpcN (spcN), and SpcZ (spcZ) genes, complete cds; and unknown gene, partial cds Length = 6682 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 gcgcccggacggctccggcgtgcgct 270 |||||||| ||||||||||||||||| Sbjct: 2135 gcgcccgggcggctccggcgtgcgct 2160
>ref|XM_483651.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1296 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 360 tactaccacggcggcggcttcgcgctcttctcc 392 |||| ||||||||||||||||| ||||||||| Sbjct: 297 tacttccacggcggcggcttcgtcctcttctcc 329
>ref|XM_450125.1| Oryza sativa (japonica cultivar-group), mRNA Length = 369 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 ggcggggctcacggcggccat 160 ||||||||||||||||||||| Sbjct: 21 ggcggggctcacggcggccat 1
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 336 gcggtgccgctgcccgtcgtcgtgtactaccacggcggcggcttc 380 |||| ||||||||||| |||| |||||||| |||||||||||| Sbjct: 2243558 gcggagccgctgcccgcgctcgtctactaccatggcggcggcttc 2243514
>ref|NM_190740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2940 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 ccgccgcctctgcagcgacgtcggc 446 |||||||||||||| |||||||||| Sbjct: 564 ccgccgcctctgcaccgacgtcggc 588
>ref|NM_186419.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1248 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||| |||| |||||||||||||||| Sbjct: 290 cccgtcgtcgcctacttccacggcggcggcttc 322
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 ggtgccgctgcccgtcgtcgt 358 ||||||||||||||||||||| Sbjct: 1070250 ggtgccgctgcccgtcgtcgt 1070230
>ref|NM_002236.4| Homo sapiens potassium voltage-gated channel, subfamily F, member 1 (KCNF1), mRNA Length = 2304 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 104 gccggcgccgctgccgctgggggtgcggc 132 |||| ||||||||||||||||||| |||| Sbjct: 442 gccgccgccgctgccgctgggggtccggc 414
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 cgatgccggcgccgctgccgc 120 ||||||||||||||||||||| Sbjct: 12222689 cgatgccggcgccgctgccgc 12222709 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 acggcggccatcgacgccgtggag 173 ||||||||| |||||||||||||| Sbjct: 27300598 acggcggccctcgacgccgtggag 27300621
>emb|CR749176.14| Zebrafish DNA sequence from clone DKEY-43B13 in linkage group 19, complete sequence Length = 237649 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 ggtgatcgaccgcctgctcag 229 ||||||||||||||||||||| Sbjct: 223628 ggtgatcgaccgcctgctcag 223608
>emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on chromosome 9 Contains the 5' end of the SMARCA2 gene for SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily a member 2 (SNF2LA), a novel gene and two CpG islands, complete sequence Length = 138859 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgccaacccgcgcccggacgg 256 ||||||||||||||||||||| Sbjct: 7594 cgccaacccgcgcccggacgg 7614
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 ttcggcggtgccgctgcccgt 352 ||||||||||||||||||||| Sbjct: 18121 ttcggcggtgccgctgcccgt 18101
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 ggtgccgctgcccgtcgtcgt 358 ||||||||||||||||||||| Sbjct: 2387764 ggtgccgctgcccgtcgtcgt 2387744
>gb|BC026110.2| Homo sapiens potassium voltage-gated channel, subfamily F, member 1, mRNA (cDNA clone MGC:33316 IMAGE:4797827), complete cds Length = 2306 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 104 gccggcgccgctgccgctgggggtgcggc 132 |||| ||||||||||||||||||| |||| Sbjct: 444 gccgccgccgctgccgctgggggtccggc 416
>emb|BX640548.14| Zebrafish DNA sequence from clone CH211-198E12 in linkage group 11, complete sequence Length = 231587 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 ggtgatcgaccgcctgctcag 229 ||||||||||||||||||||| Sbjct: 80052 ggtgatcgaccgcctgctcag 80072
>gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0076E06, from chromosome 3, complete sequence Length = 126323 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 cgatgccggcgccgctgccgc 120 ||||||||||||||||||||| Sbjct: 115298 cgatgccggcgccgctgccgc 115318
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 ggtgccgctgcccgtcgtcgt 358 ||||||||||||||||||||| Sbjct: 427536 ggtgccgctgcccgtcgtcgt 427556
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 cgatgccggcgccgctgccgc 120 ||||||||||||||||||||| Sbjct: 12219452 cgatgccggcgccgctgccgc 12219472 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 acggcggccatcgacgccgtggag 173 ||||||||| |||||||||||||| Sbjct: 27391921 acggcggccctcgacgccgtggag 27391944
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 ccgccgcctctgcagcgacgtcggc 446 |||||||||||||| |||||||||| Sbjct: 37451036 ccgccgcctctgcaccgacgtcggc 37451060
>gb|AF029780.1|AF029780 Homo sapiens potassium channel mRNA, complete cds Length = 2090 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 104 gccggcgccgctgccgctgggggtgcggc 132 |||| ||||||||||||||||||| |||| Sbjct: 200 gccgccgccgctgccgctgggggtccggc 172
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 gcgacggcaccgtcaaccgct 198 ||||||||||||||||||||| Sbjct: 8303021 gcgacggcaccgtcaaccgct 8303041 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 cgtcgacgcctcccgcggcat 304 ||||||||||||||||||||| Sbjct: 3398214 cgtcgacgcctcccgcggcat 3398194
>gb|AC079587.4| Homo sapiens BAC clone RP11-245G13 from 2, complete sequence Length = 53801 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 104 gccggcgccgctgccgctgggggtgcggc 132 |||| ||||||||||||||||||| |||| Sbjct: 52252 gccgccgccgctgccgctgggggtccggc 52224
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 ccgccgcctctgcagcgacgtcggc 446 |||||||||||||| |||||||||| Sbjct: 45573 ccgccgcctctgcaccgacgtcggc 45597
>gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete sequence Length = 183358 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 104 gccggcgccgctgccgctgggggtgcggc 132 |||| ||||||||||||||||||| |||| Sbjct: 451 gccgccgccgctgccgctgggggtccggc 423
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 368 cggcggcggcttcgcgctcttctcc 392 |||||||||| |||||||||||||| Sbjct: 9890 cggcggcggcatcgcgctcttctcc 9866
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 368 cggcggcggcttcgcgctcttctcc 392 |||||||||| |||||||||||||| Sbjct: 124263 cggcggcggcatcgcgctcttctcc 124239
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||| |||| |||||||||||||||| Sbjct: 5819 cccgtcgtcgcctacttccacggcggcggcttc 5787
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 360 tactaccacggcggcggcttcgcgctcttctcc 392 |||| ||||||||||||||||| ||||||||| Sbjct: 94299 tacttccacggcggcggcttcgtcctcttctcc 94267
>dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1112_E06 Length = 95069 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 360 tactaccacggcggcggcttcgcgctcttctcc 392 |||| ||||||||||||||||| ||||||||| Sbjct: 30753 tacttccacggcggcggcttcgtcctcttctcc 30721
>dbj|AK106054.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F06, full insert sequence Length = 1297 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 360 tactaccacggcggcggcttcgcgctcttctcc 392 |||| ||||||||||||||||| ||||||||| Sbjct: 297 tacttccacggcggcggcttcgtcctcttctcc 329
>dbj|AK104112.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-G09, full insert sequence Length = 1019 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 368 cggcggcggcttcgcgctcttctcc 392 |||||||||| |||||||||||||| Sbjct: 55 cggcggcggcatcgcgctcttctcc 79
>dbj|AK099677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070F08, full insert sequence Length = 3405 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 ccgccgcctctgcagcgacgtcggc 446 |||||||||||||| |||||||||| Sbjct: 254 ccgccgcctctgcaccgacgtcggc 278
>dbj|AK068033.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129B18, full insert sequence Length = 2979 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 ccgccgcctctgcagcgacgtcggc 446 |||||||||||||| |||||||||| Sbjct: 206 ccgccgcctctgcaccgacgtcggc 230
>dbj|AK066238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059J01, full insert sequence Length = 1199 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 368 cggcggcggcttcgcgctcttctcc 392 |||||||||| |||||||||||||| Sbjct: 69 cggcggcggcatcgcgctcttctcc 93
>dbj|AK060082.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D11, full insert sequence Length = 1248 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||| |||| |||||||||||||||| Sbjct: 290 cccgtcgtcgcctacttccacggcggcggcttc 322
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 348 cccgtcgtcgtgtactaccacggcggcggcttc 380 |||||||||| |||| |||||||||||||||| Sbjct: 175692 cccgtcgtcgcctacttccacggcggcggcttc 175660
>dbj|AB078331.1| Pyrobaculum calidifontis Pc-est gene for esterase, complete cds Length = 942 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 357 gtgtactaccacggcggcggcttcg 381 ||||||||||||||||| ||||||| Sbjct: 238 gtgtactaccacggcgggggcttcg 262
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 acggcggcggcttcgcgctc 386 |||||||||||||||||||| Sbjct: 45937 acggcggcggcttcgcgctc 45956
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 acggcggccatcgacgccgtggag 173 ||||||||| |||||||||||||| Sbjct: 3797 acggcggccctcgacgccgtggag 3774
>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete sequence Length = 138345 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 acggcggccatcgacgccgtggag 173 ||||||||| |||||||||||||| Sbjct: 805 acggcggccctcgacgccgtggag 828
>gb|AC120085.5| Rattus norvegicus 10 BAC CH230-490B8 (Children's Hospital Oakland Research Institute) complete sequence Length = 157493 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 agaggagatcggaggagaggcaga 37 ||||||||| |||||||||||||| Sbjct: 143926 agaggagatgggaggagaggcaga 143949
>ref|XM_852665.1| PREDICTED: Canis familiaris KIAA1416, transcript variant 4 (LOC486968), mRNA Length = 3231 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gctccagctggcggggctca 150 |||||||||||||||||||| Sbjct: 1471 gctccagctggcggggctca 1490
>ref|XM_544097.2| PREDICTED: Canis familiaris KIAA1416, transcript variant 1 (LOC486968), mRNA Length = 10221 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gctccagctggcggggctca 150 |||||||||||||||||||| Sbjct: 8461 gctccagctggcggggctca 8480
>ref|XM_852581.1| PREDICTED: Canis familiaris KIAA1416, transcript variant 3 (LOC486968), mRNA Length = 8070 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gctccagctggcggggctca 150 |||||||||||||||||||| Sbjct: 6310 gctccagctggcggggctca 6329
>ref|XM_001000076.1| PREDICTED: Mus musculus tripartite motif protein 3 (Trim3), mRNA Length = 3141 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gccggcgccgctgccgctgg 123 |||||||||||||||||||| Sbjct: 267 gccggcgccgctgccgctgg 248
>ref|XM_741307.1| Aspergillus fumigatus Af293 NAD binding Rossmann fold oxidoreductase (Afu4g00560) partial mRNA Length = 1431 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 catcgacgccgtggagcgca 177 |||||||||||||||||||| Sbjct: 489 catcgacgccgtggagcgca 508
>ref|XM_539953.2| PREDICTED: Canis familiaris similar to solute carrier family 20, member 2, transcript variant 1 (LOC482838), mRNA Length = 2405 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 gccgcgggtcatggacagcgcccg 101 |||| ||||||||||||||||||| Sbjct: 1403 gccgtgggtcatggacagcgcccg 1380
>ref|XM_799383.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053503713.50) partial mRNA Length = 455 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 gcggtgccgctgcccgtcgtcgtg 359 ||||||||||| |||||||||||| Sbjct: 139 gcggtgccgctacccgtcgtcgtg 162
>gb|BC041467.1| Homo sapiens cDNA clone IMAGE:5215233 Length = 2043 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 99 ccgatgccggcgccgctgccgctgggggtgcg 130 |||||||||||||||| ||||| |||| |||| Sbjct: 176 ccgatgccggcgccgccgccgccggggatgcg 207
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 cgatgccggcgccgctgccg 119 |||||||||||||||||||| Sbjct: 2895159 cgatgccggcgccgctgccg 2895178 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cgcgccaacccgcgcccgga 253 |||||||||||||||||||| Sbjct: 243513 cgcgccaacccgcgcccgga 243532
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 cggccatcggccccttcaacggcg 417 ||||||||||||||||||| |||| Sbjct: 306869 cggccatcggccccttcaagggcg 306892
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 cggccatcggccccttcaacggcg 417 ||||||||||||||||||| |||| Sbjct: 225755 cggccatcggccccttcaagggcg 225778
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 394 cggccatcggccccttcaacggcg 417 ||||||||||||||||||| |||| Sbjct: 22919 cggccatcggccccttcaagggcg 22896
>emb|BX571867.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 9/17 Length = 336609 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 cttcggcggtgccgctgccc 350 |||||||||||||||||||| Sbjct: 308663 cttcggcggtgccgctgccc 308682
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 351 gtcgtcgtgtactaccacggcggcggcttcgc 382 |||||||||| || | |||||||||||||||| Sbjct: 95538 gtcgtcgtgtccttctacggcggcggcttcgc 95569
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 ggcgccgctgccgctgggggtgcg 130 ||||||||||| |||||||||||| Sbjct: 3338489 ggcgccgctgctgctgggggtgcg 3338512
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 343 cgctgcccgtcgtcgtgtactaccacggcggcggct 378 ||||||| ||||| |||||| |||||||||||||| Sbjct: 3253717 cgctgccggtcgttctgtacttccacggcggcggct 3253682
>ref|XM_944146.1| PREDICTED: Homo sapiens similar to hypothetical protein LOC339210 (LOC650311), mRNA Length = 1234 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 99 ccgatgccggcgccgctgccgctgggggtgcg 130 |||||||||||||||| ||||| |||| |||| Sbjct: 252 ccgatgccggcgccgccgccgccggggatgcg 283
>ref|XM_939391.1| PREDICTED: Homo sapiens chromosome 17 open reading frame 67 (C17orf67), mRNA Length = 2000 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 99 ccgatgccggcgccgctgccgctgggggtgcg 130 |||||||||||||||| ||||| |||| |||| Sbjct: 170 ccgatgccggcgccgccgccgccggggatgcg 201
>ref|XM_932863.1| PREDICTED: Homo sapiens similar to hypothetical protein LOC339210 (LOC645383), mRNA Length = 1234 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 99 ccgatgccggcgccgctgccgctgggggtgcg 130 |||||||||||||||| ||||| |||| |||| Sbjct: 252 ccgatgccggcgccgccgccgccggggatgcg 283
>ref|XM_378687.3| PREDICTED: Homo sapiens chromosome 17 open reading frame 67 (C17orf67), mRNA Length = 2000 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 99 ccgatgccggcgccgctgccgctgggggtgcg 130 |||||||||||||||| ||||| |||| |||| Sbjct: 170 ccgatgccggcgccgccgccgccggggatgcg 201
>gb|AC125227.6| Mus musculus BAC clone RP23-42I13 from chromosome 7, complete sequence Length = 211209 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gccggcgccgctgccgctgg 123 |||||||||||||||||||| Sbjct: 144842 gccggcgccgctgccgctgg 144861
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 434 cagcgacgtcggcgccgtggtcgt 457 |||||||||||| ||||||||||| Sbjct: 583315 cagcgacgtcggggccgtggtcgt 583338
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 acggcggcggcttcgcgctc 386 |||||||||||||||||||| Sbjct: 24531755 acggcggcggcttcgcgctc 24531774
>gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, complete sequence Length = 118172 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 99 ccgatgccggcgccgctgccgctgggggtgcg 130 |||||||||||||||| ||||| |||| |||| Sbjct: 20986 ccgatgccggcgccgccgccgccggggatgcg 20955
>gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, complete sequence Length = 160484 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 99 ccgatgccggcgccgctgccgctgggggtgcg 130 |||||||||||||||| ||||| |||| |||| Sbjct: 5172 ccgatgccggcgccgccgccgccggggatgcg 5203
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ggcggtgccgctgcccgtcg 354 |||||||||||||||||||| Sbjct: 3595899 ggcggtgccgctgcccgtcg 3595918
>gb|AC090286.16| Homo sapiens chromosome 17, clone RP11-28B23, complete sequence Length = 168956 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ggagaggcagagtgattgag 46 |||||||||||||||||||| Sbjct: 44469 ggagaggcagagtgattgag 44450
>gb|AC003957.1|AC003957 Homo sapiens chromosome 17, clone hCIT.457_L_16, complete sequence Length = 126581 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ggagaggcagagtgattgag 46 |||||||||||||||||||| Sbjct: 72977 ggagaggcagagtgattgag 72958
>dbj|AK101848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069K04, full insert sequence Length = 3514 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 acggcggccatcgacgccgtggag 173 ||||||||| |||||||||||||| Sbjct: 453 acggcggccctcgacgccgtggag 430
>dbj|AK101451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039N10, full insert sequence Length = 3421 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 acggcggccatcgacgccgtggag 173 ||||||||| |||||||||||||| Sbjct: 470 acggcggccctcgacgccgtggag 447
>dbj|AK101402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037F15, full insert sequence Length = 2902 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 acggcggccatcgacgccgtggag 173 ||||||||| |||||||||||||| Sbjct: 466 acggcggccctcgacgccgtggag 443
>gb|AF136745.1|AF136745 Homo sapiens diacylglycerol kinase epsilon gene, promoter and partial cds Length = 5800 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 99 ccgatgccggcgccgctgccgctgggggtgcg 130 |||||||||||||||| ||||| |||| |||| Sbjct: 3733 ccgatgccggcgccgccgccgccggggatgcg 3702
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 agcgcccgatgccggcgccg 113 |||||||||||||||||||| Sbjct: 803091 agcgcccgatgccggcgccg 803110
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 341 gccgctgcccgtcgtcgtgtactaccacggcggcggcttc 380 ||||||||||| |||| ||||| ||||||||||||||| Sbjct: 2428154 gccgctgcccgcgctcgtctactatcacggcggcggcttc 2428193
>emb|AJ009617.5|HSAJ9617 Homo sapiens chromosome 17 sequence from PAC RP1-149D14 and cosmid 40M01, complete sequence Length = 153609 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ggagaggcagagtgattgag 46 |||||||||||||||||||| Sbjct: 112836 ggagaggcagagtgattgag 112817
>gb|AF016485.1| Halobacterium sp. NRC-1 plasmid pNRC100, complete sequence Length = 191346 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 ggggctcacggcggccatcgacgc 166 ||||||| |||||||||||||||| Sbjct: 113998 ggggctcgcggcggccatcgacgc 114021 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,720,820 Number of Sequences: 3902068 Number of extensions: 2720820 Number of successful extensions: 70559 Number of sequences better than 10.0: 133 Number of HSP's better than 10.0 without gapping: 142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65373 Number of HSP's gapped (non-prelim): 5182 length of query: 467 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 445 effective length of database: 17,147,199,772 effective search space: 7630503898540 effective search space used: 7630503898540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
