ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59e09 |
|---|---|
| Clone Library Name | barley_pub |
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 94.0 bits (232), Expect = 1e-19 Identities = 48/93 (51%), Positives = 62/93 (66%), Gaps = 3/93 (3%) Frame = +3 Query: 117 PAAAFG---DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFV 287 P+A G DTT TK+FVGGL + T +LR++FE FGDI EAV+I+D+ TG+S+GYGFV Sbjct: 19 PSAMHGSRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 78 Query: 288 TFXXXXXXXXXXXXGTPVINGRRANCNLASLGA 386 T P+I+GR+AN NLA LGA Sbjct: 79 TMADRAAADRACKDPNPIIDGRKANVNLAYLGA 111
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 93.2 bits (230), Expect = 2e-19 Identities = 45/84 (53%), Positives = 58/84 (69%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXX 314 DTT TK+FVGGL + T +LR++FE FGDI EAV+I+D+ TG+S+GYGFVT Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66 Query: 315 XXXXXGTPVINGRRANCNLASLGA 386 P+I+GR+AN NLA LGA Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA 90
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 66.2 bits (160), Expect = 3e-11 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXX 329 K+FVGGL+WET ++ L +F RFGDI++ V++ + +GRS+G+GFVTF Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 330 GTPVINGRRAN---CNLASL 380 G ++GR + CN +L Sbjct: 68 GPHTLDGRTIDPKPCNPRTL 87 Score = 44.3 bits (103), Expect = 1e-04 Identities = 20/48 (41%), Positives = 31/48 (64%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 KVF+GGL + LR F R+G + E VI+ D+ +S+G+GF++F Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF 144
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 64.3 bits (155), Expect = 1e-10 Identities = 25/48 (52%), Positives = 39/48 (81%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL+W+T D+LR++F +FG+I E +++ D T RS+G+GFVTF Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69 Score = 57.0 bits (136), Expect = 2e-08 Identities = 30/91 (32%), Positives = 48/91 (52%) Frame = +3 Query: 102 PQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 P++ QP T K+FVGGL+ T + ++++FE+FG + +A+++ DK T R +G+G Sbjct: 98 PRRAQPKMV---TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFG 154 Query: 282 FVTFXXXXXXXXXXXXGTPVINGRRANCNLA 374 FVTF IN + C A Sbjct: 155 FVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 64.3 bits (155), Expect = 1e-10 Identities = 25/48 (52%), Positives = 39/48 (81%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL+W+T D+LR++F +FG+I E +++ D T RS+G+GFVTF Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69 Score = 57.0 bits (136), Expect = 2e-08 Identities = 30/91 (32%), Positives = 48/91 (52%) Frame = +3 Query: 102 PQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 P++ QP T K+FVGGL+ T + ++++FE+FG + +A+++ DK T R +G+G Sbjct: 98 PRRAQPKMV---TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFG 154 Query: 282 FVTFXXXXXXXXXXXXGTPVINGRRANCNLA 374 FVTF IN + C A Sbjct: 155 FVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 63.9 bits (154), Expect = 2e-10 Identities = 27/48 (56%), Positives = 39/48 (81%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + FVGGLAW T+ ++L + F +FGDI ++ II+D+ TGRS+G+GFVTF Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTF 54
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 63.5 bits (153), Expect = 2e-10 Identities = 25/48 (52%), Positives = 40/48 (83%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL+W+T ++ LRE+F +FG++ E +++ D LT RS+G+GFVTF Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 56.6 bits (135), Expect = 3e-08 Identities = 30/91 (32%), Positives = 47/91 (51%) Frame = +3 Query: 102 PQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 P++ QP T K+FVGGL+ T + ++ +FE+FG + +A+++ DK T R +G+G Sbjct: 97 PRRAQPKMV---TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG 153 Query: 282 FVTFXXXXXXXXXXXXGTPVINGRRANCNLA 374 FVTF IN + C A Sbjct: 154 FVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 63.5 bits (153), Expect = 2e-10 Identities = 25/48 (52%), Positives = 40/48 (83%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL+W+T ++ LRE+F +FG++ E +++ D LT RS+G+GFVTF Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 56.6 bits (135), Expect = 3e-08 Identities = 30/91 (32%), Positives = 47/91 (51%) Frame = +3 Query: 102 PQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 P++ QP T K+FVGGL+ T + ++ +FE+FG + +A+++ DK T R +G+G Sbjct: 97 PRRAQPKMV---TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG 153 Query: 282 FVTFXXXXXXXXXXXXGTPVINGRRANCNLA 374 FVTF IN + C A Sbjct: 154 FVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 63.5 bits (153), Expect = 2e-10 Identities = 25/48 (52%), Positives = 40/48 (83%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL+W+T ++ LRE+F +FG++ E +++ D LT RS+G+GFVTF Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68 Score = 57.4 bits (137), Expect = 1e-08 Identities = 30/91 (32%), Positives = 48/91 (52%) Frame = +3 Query: 102 PQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 P++ QP T K+FVGGL+ T + ++++FE+FG + +A+++ DK T R +G+G Sbjct: 97 PRRAQPKMV---TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFG 153 Query: 282 FVTFXXXXXXXXXXXXGTPVINGRRANCNLA 374 FVTF IN + C A Sbjct: 154 FVTFESEDIVEKVCEIHFHEINNKMVECKKA 184
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 63.2 bits (152), Expect = 3e-10 Identities = 25/48 (52%), Positives = 38/48 (79%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + FVGGLAW T+ +TL + F FG ++++ +I+D+ TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTF 56
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 63.2 bits (152), Expect = 3e-10 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF-XXXXXXXXXX 323 TK+F+GGL+W T +LR+ F FGD+++A +I D+ TGRS+G+GFV F Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94 Query: 324 XXGTPVINGRRANCNLAS 377 +NGR N A+ Sbjct: 95 EMDGKELNGRHIRVNPAN 112
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 62.8 bits (151), Expect = 4e-10 Identities = 26/50 (52%), Positives = 40/50 (80%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 L K+F+GGL++ET D+LREHFE++G + + V++ D T RS+G+GFVT+ Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83 Score = 52.0 bits (123), Expect = 6e-07 Identities = 28/93 (30%), Positives = 48/93 (51%) Frame = +3 Query: 93 LGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSK 272 + + V+P A T+ K+FVGG+ +T + LR++FE++G I ++ D+ +G+ + Sbjct: 111 VSREDSVKPGAHL---TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 273 GYGFVTFXXXXXXXXXXXXGTPVINGRRANCNL 371 G+ FVTF ING NC + Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGH--NCEV 198
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 62.8 bits (151), Expect = 4e-10 Identities = 26/50 (52%), Positives = 40/50 (80%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 L K+F+GGL++ET D+LREHFE++G + + V++ D T RS+G+GFVT+ Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83 Score = 52.0 bits (123), Expect = 6e-07 Identities = 28/93 (30%), Positives = 48/93 (51%) Frame = +3 Query: 93 LGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSK 272 + + V+P A T+ K+FVGG+ +T + LR++FE++G I ++ D+ +G+ + Sbjct: 111 VSREDSVKPGAHL---TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 273 GYGFVTFXXXXXXXXXXXXGTPVINGRRANCNL 371 G+ FVTF ING NC + Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGH--NCEV 198
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 62.8 bits (151), Expect = 4e-10 Identities = 25/54 (46%), Positives = 40/54 (74%) Frame = +3 Query: 132 GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 G + K+FVGGL W T ++TLR +F ++G++++ VI+ DK T +S+G+GFV F Sbjct: 5 GGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 48.1 bits (113), Expect = 9e-06 Identities = 24/63 (38%), Positives = 37/63 (58%) Frame = +3 Query: 105 QQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGF 284 QQ +P ++ K+FVGG+ + L+E+F RFG + E V+I D R +G+GF Sbjct: 102 QQKEPRTE--NSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGF 159 Query: 285 VTF 293 +TF Sbjct: 160 ITF 162
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 62.8 bits (151), Expect = 4e-10 Identities = 26/50 (52%), Positives = 40/50 (80%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 L K+F+GGL++ET D+LREHFE++G + + V++ D T RS+G+GFVT+ Sbjct: 34 LRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83 Score = 52.0 bits (123), Expect = 6e-07 Identities = 28/93 (30%), Positives = 48/93 (51%) Frame = +3 Query: 93 LGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSK 272 + + V+P A T+ K+FVGG+ +T + LR++FE++G I ++ D+ +G+ + Sbjct: 111 VSREDSVKPGAHL---TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR 167 Query: 273 GYGFVTFXXXXXXXXXXXXGTPVINGRRANCNL 371 G+ FVTF ING NC + Sbjct: 168 GFAFVTFDDHDTVDKIVVQKYHTINGH--NCEV 198
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 62.4 bits (150), Expect = 5e-10 Identities = 25/54 (46%), Positives = 40/54 (74%) Frame = +3 Query: 132 GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 G + K+FVGGL W T ++TLR +F ++G++++ VI+ DK T +S+G+GFV F Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 49.3 bits (116), Expect = 4e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 6/71 (8%) Frame = +3 Query: 99 QPQQVQPAAAF------GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLT 260 QP++ +P + ++ K+FVGG+ + LRE+F++FG + E V+I D Sbjct: 91 QPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK 150 Query: 261 GRSKGYGFVTF 293 R +G+GF+TF Sbjct: 151 QRPRGFGFITF 161
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/78 (35%), Positives = 50/78 (64%) Frame = +3 Query: 60 ASRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAV 239 AS+ + + P+ + AAA + K+F+GGL+W+T K L+++F +FG++++ Sbjct: 70 ASKNEEDEGHSNSSPRHTEAAAAQREEW--KMFIGGLSWDTTKKDLKDYFSKFGEVVDCT 127 Query: 240 IISDKLTGRSKGYGFVTF 293 + D +TGRS+G+GFV F Sbjct: 128 LKLDPITGRSRGFGFVLF 145 Score = 43.5 bits (101), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+ +T ++ +RE+F FG++ + D T + +G+ F+TF Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 62.4 bits (150), Expect = 5e-10 Identities = 26/50 (52%), Positives = 40/50 (80%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 L K+F+GGL++ET D+LREHFE++G + + V++ D T RS+G+GFVT+ Sbjct: 26 LRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75 Score = 48.5 bits (114), Expect = 7e-06 Identities = 20/51 (39%), Positives = 35/51 (68%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T+ K+FVGG+ +T + LR++FE +G I ++ D+ +G+ +G+ FVTF Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTF 166
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 62.4 bits (150), Expect = 5e-10 Identities = 26/50 (52%), Positives = 40/50 (80%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 L K+F+GGL++ET D+LREHFE++G + + V++ D T RS+G+GFVT+ Sbjct: 26 LRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75 Score = 46.6 bits (109), Expect = 3e-05 Identities = 24/77 (31%), Positives = 40/77 (51%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LR++ E +G I ++ D+ +G+ +G+ FVTF Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 175 Query: 321 XXXGTPVINGRRANCNL 371 ING NC + Sbjct: 176 VVQKYHTINGH--NCEV 190
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 62.4 bits (150), Expect = 5e-10 Identities = 25/54 (46%), Positives = 40/54 (74%) Frame = +3 Query: 132 GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 G + K+FVGGL W T ++TLR +F ++G++++ VI+ DK T +S+G+GFV F Sbjct: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 48.9 bits (115), Expect = 5e-06 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Frame = +3 Query: 99 QPQQVQPAAAF------GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLT 260 QP++ +P + + K+FVGG+ + LRE+F++FG + E V+I D Sbjct: 91 QPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK 150 Query: 261 GRSKGYGFVTF 293 R +G+GF+TF Sbjct: 151 QRPRGFGFITF 161
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/78 (35%), Positives = 49/78 (62%) Frame = +3 Query: 60 ASRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAV 239 AS+ + + P+ + A A + K+F+GGL+W+T K L+++F +FGD+++ Sbjct: 68 ASKNEEDEGHSNSSPRHTEAATAQREEW--KMFIGGLSWDTTKKDLKDYFSKFGDVVDCT 125 Query: 240 IISDKLTGRSKGYGFVTF 293 + D +TGRS+G+GFV F Sbjct: 126 LKLDPITGRSRGFGFVLF 143 Score = 43.5 bits (101), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+ +T ++ +RE+F FG++ + D T + +G+ F+TF Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 228
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 62.0 bits (149), Expect = 6e-10 Identities = 25/48 (52%), Positives = 39/48 (81%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + FVGGLAW T+ + L+ F +FGD++++ II+D+ +GRS+G+GFVTF Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 60.5 bits (145), Expect = 2e-09 Identities = 29/77 (37%), Positives = 48/77 (62%) Frame = +3 Query: 63 SRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVI 242 +R RP + P+ Q A+ + K+FVGGL+W+T K L+++F +FG++++ I Sbjct: 41 ARPPRPRAGIRTAPRD-QINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 99 Query: 243 ISDKLTGRSKGYGFVTF 293 D TGRS+G+GF+ F Sbjct: 100 KMDPNTGRSRGFGFILF 116 Score = 36.2 bits (82), Expect = 0.035 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = +3 Query: 120 AAAFGDTTLTKVFVGGLAWETH-KDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 A A + K+FVGGL E+ ++ +RE+F FG+I + D + +G+ F+TF Sbjct: 143 AMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 201
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 60.5 bits (145), Expect = 2e-09 Identities = 22/48 (45%), Positives = 38/48 (79%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL+W+T K L+++F +FG++++ + D +TGRS+G+GFV F Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145 Score = 43.5 bits (101), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+ +T ++ +RE+F FG++ + D T + +G+ F+TF Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 60.5 bits (145), Expect = 2e-09 Identities = 25/48 (52%), Positives = 37/48 (77%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + FVGGLAW T ++L F +G+IL++ +I+D+ TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTF 56
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 59.7 bits (143), Expect = 3e-09 Identities = 23/48 (47%), Positives = 37/48 (77%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL W+T +D LRE+F ++G + + I+ D TGRS+G+GF++F Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207 Score = 48.1 bits (113), Expect = 9e-06 Identities = 20/48 (41%), Positives = 33/48 (68%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGG+ + E F ++G I++A ++ DK TG+S+G+GFVT+ Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 59.7 bits (143), Expect = 3e-09 Identities = 26/70 (37%), Positives = 44/70 (62%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 L K+F+GGL++ET ++LREHFE++G + + V++ D + RS+G+GFVT+ Sbjct: 13 LRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAM 72 Query: 324 XXGTPVINGR 353 ++GR Sbjct: 73 TARPHKVDGR 82 Score = 53.9 bits (128), Expect = 2e-07 Identities = 23/51 (45%), Positives = 38/51 (74%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T+ K+FVGG+ +T +D LRE+FE++G I I++D+ +G+ +G+ FVTF Sbjct: 103 TVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 59.7 bits (143), Expect = 3e-09 Identities = 23/48 (47%), Positives = 37/48 (77%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+W+T K L+++F +FG++++ I D TGRS+G+GF+ F Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = +3 Query: 120 AAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 A A + K+FVGGL E ++ +RE+F +FG+I + D + +G+ F+TF Sbjct: 150 AMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITF 207
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 59.7 bits (143), Expect = 3e-09 Identities = 25/48 (52%), Positives = 38/48 (79%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + FVGGLAW T + +L F +FG+++++ II+D+ TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTF 56
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 59.3 bits (142), Expect = 4e-09 Identities = 25/71 (35%), Positives = 41/71 (57%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXX 329 K+FVGGL+WET + LR+HF ++G+I + +D TGRS+G+ F+ F Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116 Query: 330 GTPVINGRRAN 362 +IN ++ + Sbjct: 117 DEHIINSKKVD 127 Score = 43.5 bits (101), Expect = 2e-04 Identities = 19/48 (39%), Positives = 31/48 (64%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL E + ++ +F +FG+I+E + DK + KG+ F+TF Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF 184
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 59.3 bits (142), Expect = 4e-09 Identities = 25/48 (52%), Positives = 36/48 (75%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + FVGGLAW T L F ++GD++++ II+D+ TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 58.9 bits (141), Expect = 5e-09 Identities = 25/48 (52%), Positives = 36/48 (75%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + FVGGLAW T L F ++G++L++ II+D+ TGRS+G+GFVTF Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTF 56
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 58.9 bits (141), Expect = 5e-09 Identities = 26/70 (37%), Positives = 43/70 (61%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 L K+F+GGL++ET ++LR HFE++G + + V++ D T RS+G+GFVT+ Sbjct: 12 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71 Query: 324 XXGTPVINGR 353 ++GR Sbjct: 72 NARPHKVDGR 81 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LR++FE++G I I++D+ +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 321 XXXGTPVINGRRANCNL 371 +NG NC + Sbjct: 162 VIQKYHTVNGH--NCEV 176
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 58.9 bits (141), Expect = 5e-09 Identities = 26/70 (37%), Positives = 43/70 (61%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 L K+F+GGL++ET ++LR HFE++G + + V++ D T RS+G+GFVT+ Sbjct: 12 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71 Query: 324 XXGTPVINGR 353 ++GR Sbjct: 72 NARPHKVDGR 81 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LR++FE++G I I++D+ +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 321 XXXGTPVINGRRANCNL 371 +NG NC + Sbjct: 162 VIQKYHTVNGH--NCEV 176
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 58.9 bits (141), Expect = 5e-09 Identities = 26/70 (37%), Positives = 43/70 (61%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 L K+F+GGL++ET ++LR HFE++G + + V++ D T RS+G+GFVT+ Sbjct: 12 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAM 71 Query: 324 XXGTPVINGR 353 ++GR Sbjct: 72 NARPHKVDGR 81 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LR++FE++G I I++D+ +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 161 Query: 321 XXXGTPVINGRRANCNL 371 +NG NC + Sbjct: 162 VIQKYHTVNGH--NCEV 176
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 58.9 bits (141), Expect = 5e-09 Identities = 26/70 (37%), Positives = 43/70 (61%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 L K+F+GGL++ET ++LR HFE++G + + V++ D T RS+G+GFVT+ Sbjct: 12 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71 Query: 324 XXGTPVINGR 353 ++GR Sbjct: 72 NARPHKVDGR 81 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LR++FE++G I I++D+ +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 321 XXXGTPVINGRRANCNL 371 +NG NC + Sbjct: 162 VIQKYHTVNGH--NCEV 176
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 58.9 bits (141), Expect = 5e-09 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Frame = +3 Query: 66 RKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVII 245 +K++ + +P ++ + + T T VFVG L+W L + FE +G I+ A +I Sbjct: 237 KKRKAEPASEERPAKITKPSQDSNETCT-VFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295 Query: 246 SDKLTGRSKGYGFVTFXX-XXXXXXXXXXGTPVINGRRANCNLAS 377 D +GRSKGYG+V F GT I+GR N +L++ Sbjct: 296 MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340 Score = 43.9 bits (102), Expect = 2e-04 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Frame = +3 Query: 99 QPQQVQPAAAFGDTTLTK---VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRS 269 QP Q A FGD VFVG L++ +D L F GDI + +D +GR Sbjct: 347 QPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRL 406 Query: 270 KGYGFVTF 293 KG+G+VTF Sbjct: 407 KGFGYVTF 414
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 58.9 bits (141), Expect = 5e-09 Identities = 26/70 (37%), Positives = 43/70 (61%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 L K+F+GGL++ET ++LR HFE++G + + V++ D T RS+G+GFVT+ Sbjct: 12 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 71 Query: 324 XXGTPVINGR 353 ++GR Sbjct: 72 NARPHKVDGR 81 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LR++FE++G I I++D+ +G+ +G+ FVTF Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Query: 321 XXXGTPVINGRRANCNL 371 +NG NC + Sbjct: 162 VIQKYHTVNGH--NCEV 176
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 58.9 bits (141), Expect = 5e-09 Identities = 25/48 (52%), Positives = 36/48 (75%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + FVGGLAW T L F +FG+++++ II+D+ TGRS+G+GFVTF Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTF 54
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 58.2 bits (139), Expect = 9e-09 Identities = 26/70 (37%), Positives = 42/70 (60%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 L K+F+GGL + T D L+ HFE++G+I++ V++ D T RS+G+GF+T+ Sbjct: 23 LRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQ 82 Query: 324 XXGTPVINGR 353 I+GR Sbjct: 83 NARPHKIDGR 92 Score = 52.4 bits (124), Expect = 5e-07 Identities = 23/51 (45%), Positives = 36/51 (70%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T+ K+FVGGL + ++ LRE+F+ FG I+ I+SDK TG+ +G+ F+ F Sbjct: 113 TVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 57.8 bits (138), Expect = 1e-08 Identities = 27/77 (35%), Positives = 42/77 (54%) Frame = +3 Query: 123 AAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXX 302 A+ L K+FVGGL T D +RE + +FG+I + +++ D T RS+G+GFVTF Sbjct: 15 ASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGK 74 Query: 303 XXXXXXXXXGTPVINGR 353 +I+G+ Sbjct: 75 TEVDAAMKQRPHIIDGK 91 Score = 46.6 bits (109), Expect = 3e-05 Identities = 21/71 (29%), Positives = 40/71 (56%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXX 329 +++V G+ + +D L E+F ++G + ++ II DK T + +G+GFVTF Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174 Query: 330 GTPVINGRRAN 362 + ++NG R + Sbjct: 175 KSHMVNGHRCD 185
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 57.4 bits (137), Expect = 1e-08 Identities = 21/48 (43%), Positives = 39/48 (81%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL + T ++L++HFE++G+I++ V++ D T RS+G+GF+T+ Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 65 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 4/69 (5%) Frame = +3 Query: 99 QPQQVQPAAAFG----DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGR 266 +P++ P G T+ K+FVGG+ E ++ LR++F+++G ++ A I+ DK T + Sbjct: 88 EPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRK 147 Query: 267 SKGYGFVTF 293 +G+ FV F Sbjct: 148 KRGFAFVEF 156
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 57.4 bits (137), Expect = 1e-08 Identities = 24/48 (50%), Positives = 34/48 (70%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL + T + L +HF FG I E V++ D+ T RS+G+GF+TF Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITF 54
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 57.4 bits (137), Expect = 1e-08 Identities = 24/48 (50%), Positives = 34/48 (70%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL + T + L +HF FG I E V++ D+ T RS+G+GF+TF Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITF 54
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 57.4 bits (137), Expect = 1e-08 Identities = 24/48 (50%), Positives = 37/48 (77%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL +ET++D L + F ++G I E V++ D+ T RS+G+GFVTF Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTF 53
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 57.4 bits (137), Expect = 1e-08 Identities = 30/78 (38%), Positives = 42/78 (53%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LRE+FE +G I II+DK +G+ +G+GFVTF Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKI 157 Query: 321 XXXGTPVINGRRANCNLA 374 ING A A Sbjct: 158 VLQKYHTINGHNAEVRKA 175 Score = 55.5 bits (132), Expect = 6e-08 Identities = 24/68 (35%), Positives = 42/68 (61%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXX 329 K+F+GGL++ET +++LR +E++G + + V++ D + RS+G+GFVTF Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 330 GTPVINGR 353 I+GR Sbjct: 70 RPHTIDGR 77
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 57.0 bits (136), Expect = 2e-08 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 + K+F+GGL + T + L+ HFE++G+I++ V++ D T RS+G+GF+T+ Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 89 Query: 324 XXGTPVINGR 353 I+GR Sbjct: 90 KSRPHKIDGR 99 Score = 48.5 bits (114), Expect = 7e-06 Identities = 20/51 (39%), Positives = 36/51 (70%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T+ K+FVG L + + ++R++F+ FG+I++ I+ DK TG+ +G+ FV F Sbjct: 120 TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEF 170
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 57.0 bits (136), Expect = 2e-08 Identities = 23/48 (47%), Positives = 38/48 (79%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+++T++ +L + F ++G I E V++ D+ T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 57.0 bits (136), Expect = 2e-08 Identities = 23/48 (47%), Positives = 38/48 (79%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+++T++ +L + F ++G I E V++ D+ T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 56.6 bits (135), Expect = 3e-08 Identities = 24/68 (35%), Positives = 43/68 (63%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXX 329 K+F+GGL++ET +++LR ++E++G + + V++ D + RS+G+GFVTF Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 330 GTPVINGR 353 I+GR Sbjct: 70 RPHSIDGR 77 Score = 53.9 bits (128), Expect = 2e-07 Identities = 28/78 (35%), Positives = 42/78 (53%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LR++FE +G I II+D+ +G+ +G+GFVTF Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157 Query: 321 XXXGTPVINGRRANCNLA 374 ING A A Sbjct: 158 VLQKYHTINGHNAEVRKA 175
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 56.6 bits (135), Expect = 3e-08 Identities = 24/68 (35%), Positives = 43/68 (63%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXX 329 K+F+GGL++ET +++LR ++E++G + + V++ D + RS+G+GFVTF Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 330 GTPVINGR 353 I+GR Sbjct: 82 RPHSIDGR 89 Score = 53.9 bits (128), Expect = 2e-07 Identities = 28/78 (35%), Positives = 42/78 (53%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LR++FE +G I II+D+ +G+ +G+GFVTF Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169 Query: 321 XXXGTPVINGRRANCNLA 374 ING A A Sbjct: 170 VLQKYHTINGHNAEVRKA 187
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 56.6 bits (135), Expect = 3e-08 Identities = 23/48 (47%), Positives = 37/48 (77%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+++T++ L + F ++G I E V++ D+ T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 56.6 bits (135), Expect = 3e-08 Identities = 23/48 (47%), Positives = 37/48 (77%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+++T++ L + F ++G I E V++ D+ T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 56.6 bits (135), Expect = 3e-08 Identities = 23/48 (47%), Positives = 37/48 (77%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+++T++ L + F ++G I E V++ D+ T RS+G+GFVTF Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 56.2 bits (134), Expect = 3e-08 Identities = 24/68 (35%), Positives = 43/68 (63%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXX 329 K+F+GGL++ET +++LR ++E++G + + V++ D + RS+G+GFVTF Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 330 GTPVINGR 353 I+GR Sbjct: 70 RPHTIDGR 77 Score = 54.3 bits (129), Expect = 1e-07 Identities = 29/78 (37%), Positives = 41/78 (52%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXX 320 T+ K+FVGG+ +T + LRE+FE +G I II+DK +G+ +G+ FVTF Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKI 157 Query: 321 XXXGTPVINGRRANCNLA 374 ING A A Sbjct: 158 VLQKYHTINGHNAEVRKA 175
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 53.1 bits (126), Expect = 3e-07 Identities = 24/58 (41%), Positives = 39/58 (67%) Frame = +3 Query: 120 AAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 A +G ++FVGG+ ++T++ LR+ F ++G + E I++D+ G SKGYGFVTF Sbjct: 24 APRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTF 80
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 53.1 bits (126), Expect = 3e-07 Identities = 24/58 (41%), Positives = 39/58 (67%) Frame = +3 Query: 120 AAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 A +G ++FVGG+ ++T++ LR+ F ++G + E I++D+ G SKGYGFVTF Sbjct: 24 APRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTF 80
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 53.1 bits (126), Expect = 3e-07 Identities = 22/49 (44%), Positives = 37/49 (75%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 TK+++GGL+ T + +L++ F F + EA ++++K+TGRS+GYGFV F Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 52.4 bits (124), Expect = 5e-07 Identities = 22/55 (40%), Positives = 39/55 (70%) Frame = +3 Query: 129 FGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +G ++FVGG+ ++T+++ LR+ F ++G + E I++D+ G SKGYGF+TF Sbjct: 27 YGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITF 80
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/48 (47%), Positives = 34/48 (70%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL + + L EHF +FG + +A II+DK +G+ +G+GFV F Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYF 146 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXX 314 ++ L K+F+GGL +T + LR HFE FG + + V++ + T RS+ +GFVT+ Sbjct: 3 NSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62 Query: 315 XXXXXGTPVING 350 ++G Sbjct: 63 AAMAASPHAVDG 74
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/47 (51%), Positives = 31/47 (65%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L + L E FER G++ +I DKLTGRS+G+GFVT Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVT 134 Score = 49.7 bits (117), Expect = 3e-06 Identities = 20/48 (41%), Positives = 33/48 (68%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +V+VG LAW +D L F G +++A ++ D+ +GRS+G+GFVT+ Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTY 236
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 50.4 bits (119), Expect = 2e-06 Identities = 24/47 (51%), Positives = 31/47 (65%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L + L E FER G++ +I DKLTGRS+G+GFVT Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVT 134 Score = 49.7 bits (117), Expect = 3e-06 Identities = 20/48 (41%), Positives = 33/48 (68%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +V+VG LAW +D L F G +++A ++ D+ +GRS+G+GFVT+ Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTY 242
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 50.1 bits (118), Expect = 2e-06 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXX-XXXXXXXXX 326 +V+VG L W+ L + F G ++ A ++SD+ TGRS+G+GFVT Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209 Query: 327 XGTPVINGRRANCNLA 374 ++GR N+A Sbjct: 210 LDGQTLDGRAVRVNVA 225 Score = 37.0 bits (84), Expect = 0.021 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L ++ + L F+ G + A +I ++ T RS+G+GFVT Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 50.1 bits (118), Expect = 2e-06 Identities = 24/48 (50%), Positives = 32/48 (66%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +++VG L + +D LR FE FG I V++ D TGRSKGYGF+TF Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF 311 Score = 29.6 bits (65), Expect = 3.3 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF LA L + F G + + IISD+ + RSKG +V F Sbjct: 168 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 214
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 49.7 bits (117), Expect = 3e-06 Identities = 35/123 (28%), Positives = 54/123 (43%) Frame = +3 Query: 3 VVHRHSAPSSCCVVEVGT*ASRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWET 182 ++H A V V K++ D T +V+ A + + V GL W+T Sbjct: 60 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ----KTSDLIVLGLPWKT 115 Query: 183 HKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXGTPVINGRRAN 362 + L+E+F FG++L + D TG SKG+GFV F +I+GR + Sbjct: 116 TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 174 Query: 363 CNL 371 C L Sbjct: 175 CKL 177 Score = 32.7 bits (73), Expect = 0.39 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 KVFVG + +D LRE F ++GD+++ I + + FVTF Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTF 234
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 49.7 bits (117), Expect = 3e-06 Identities = 27/77 (35%), Positives = 41/77 (53%) Frame = +3 Query: 60 ASRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAV 239 A R RP+ P+ +PA +V+VG L W+ L + F G ++EA Sbjct: 227 APRGSRPERA----PRVYEPAF--------RVYVGNLPWDVDNGRLEQLFSEHGKVVEAR 274 Query: 240 IISDKLTGRSKGYGFVT 290 ++ D+ TGRS+G+GFVT Sbjct: 275 VVYDRETGRSRGFGFVT 291 Score = 40.4 bits (93), Expect = 0.002 Identities = 19/47 (40%), Positives = 31/47 (65%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG LA++ + L FE+ G + A +I ++ T +S+G+GFVT Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 197
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 48.9 bits (115), Expect = 5e-06 Identities = 20/51 (39%), Positives = 36/51 (70%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++ K+FVGGL ++ LRE+F +FG+++ +++DK TG+ +G+ FV F Sbjct: 121 SVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF 171 Score = 48.5 bits (114), Expect = 7e-06 Identities = 22/77 (28%), Positives = 42/77 (54%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXX 323 L K+F+GGLA T ++ L+ + ++G +++ V++ D T RS+G+GF+T+ Sbjct: 31 LRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQ 90 Query: 324 XXGTPVINGRRANCNLA 374 +I+G+ A Sbjct: 91 ENRPHIIDGKTVEAKRA 107
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 48.5 bits (114), Expect = 7e-06 Identities = 24/59 (40%), Positives = 35/59 (59%) Frame = +3 Query: 117 PAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 PA + ++FVGG T + LREHFE+F + + ++ L G+SKGYGF+TF Sbjct: 57 PAPPTYELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVK-SLDGQSKGYGFITF 114
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 48.5 bits (114), Expect = 7e-06 Identities = 34/123 (27%), Positives = 54/123 (43%) Frame = +3 Query: 3 VVHRHSAPSSCCVVEVGT*ASRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWET 182 ++H A V V K++ D T +V+ A + + V GL W+T Sbjct: 60 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQ----KTSDLIVLGLPWKT 115 Query: 183 HKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXGTPVINGRRAN 362 + L+++F FG++L + D TG SKG+GFV F +I+GR + Sbjct: 116 TEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 174 Query: 363 CNL 371 C L Sbjct: 175 CKL 177
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 48.1 bits (113), Expect = 9e-06 Identities = 20/48 (41%), Positives = 34/48 (70%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL ET++ L F ++G I+E +++ D+ T +S+G+ FVTF Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTF 56
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 48.1 bits (113), Expect = 9e-06 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF-XXXXXXXXXXXX 329 +FVG L+W + L++ FE G ++ A +I ++ T RS+GYG+V F Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 330 GTPVINGRRANCNLAS 377 I+GR NC++++ Sbjct: 230 QGKEIDGRPINCDMST 245 Score = 35.8 bits (81), Expect = 0.046 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Frame = +3 Query: 120 AAAFGDTTLTK---VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 A FGDT +F+G L++ +D + E F + G+++ I + T + KG+G+V Sbjct: 255 AKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQ 314 Query: 291 F 293 F Sbjct: 315 F 315
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 47.8 bits (112), Expect = 1e-05 Identities = 20/48 (41%), Positives = 34/48 (70%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL ET++ L F ++G I+E +++ D+ T +S+G+ FVTF Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTF 56
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 47.8 bits (112), Expect = 1e-05 Identities = 23/47 (48%), Positives = 34/47 (72%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ ++ +R +FE++G + E II+D+ TG SKGYGFV+F Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSF 83
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 47.8 bits (112), Expect = 1e-05 Identities = 19/48 (39%), Positives = 34/48 (70%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +V+VG L+W L+E F G++++A ++ D+ +GRS+G+GFVT+ Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTY 256 Score = 45.1 bits (105), Expect = 8e-05 Identities = 22/47 (46%), Positives = 30/47 (63%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L + L FER G++ +I DKL+GRS+G+GFVT Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVT 135
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 47.8 bits (112), Expect = 1e-05 Identities = 23/48 (47%), Positives = 31/48 (64%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +++VG L + +D LR FE FG I ++ D TGRSKGYGF+TF Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF LA L E F G + + +ISD+ + RS+G +V F Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEF 201
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 47.8 bits (112), Expect = 1e-05 Identities = 23/48 (47%), Positives = 31/48 (64%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +++VG L + +D LR FE FG I ++ D TGRSKGYGF+TF Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298 Score = 29.6 bits (65), Expect = 3.3 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF LA L E F G + + +ISD+ + RSKG +V F Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEF 201
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 47.8 bits (112), Expect = 1e-05 Identities = 19/48 (39%), Positives = 34/48 (70%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +V+VG L+W L+E F G++++A ++ D+ +GRS+G+GFVT+ Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTY 255 Score = 47.0 bits (110), Expect = 2e-05 Identities = 23/47 (48%), Positives = 30/47 (63%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L + L FER G++ +I DKLTGRS+G+GFVT Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVT 134
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG L+ E + ++ F FG I +A ++ D TG+SKGYGFV+F Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V+ GG+A +R+ F FG I+E + + KGY FV F Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRF 264
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG L+ E + ++ F FG I +A ++ D TG+SKGYGFV+F Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V+ GG+A +R+ F FG I+E + + KGY FV F Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRF 247
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 47.0 bits (110), Expect = 2e-05 Identities = 21/48 (43%), Positives = 31/48 (64%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +V+VG L+W L F G ++EA +I D+ +GRSKG+GFVT+ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252 Score = 45.1 bits (105), Expect = 8e-05 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L + L + FE G++ +I DK+TGRS+G+GFVT Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVT 138
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 46.6 bits (109), Expect = 3e-05 Identities = 22/47 (46%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG L+ E + ++ F FG I +A ++ D TG+SKGYGFV+F Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V+ GG+ + +R+ F FG I+E + D KGY FV F Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRF 256
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 46.2 bits (108), Expect = 3e-05 Identities = 19/47 (40%), Positives = 33/47 (70%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+F+GGL ET++ L F ++G I+E +++ D+ T +S+G+ FVT Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVT 55
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 45.8 bits (107), Expect = 4e-05 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + +R F R+G + E II+D+ TG SKGYGFV+F Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 45.8 bits (107), Expect = 4e-05 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + +R F R+G + E II+D+ TG SKGYGFV+F Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 45.8 bits (107), Expect = 4e-05 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + +R F R+G + E II+D+ TG SKGYGFV+F Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 45.4 bits (106), Expect = 6e-05 Identities = 22/50 (44%), Positives = 33/50 (66%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 LT + + L+++T + LR FER+GDI + I DK + +SKG+GFV F Sbjct: 18 LTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 45.4 bits (106), Expect = 6e-05 Identities = 18/47 (38%), Positives = 33/47 (70%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+G L ++ + L+++F +FG+I + I+ DK+T +SKGY F+ F Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF 155
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 45.4 bits (106), Expect = 6e-05 Identities = 21/47 (44%), Positives = 31/47 (65%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L++ L + FE G++ +I DK+TGRS+G+GFVT Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146 Score = 45.1 bits (105), Expect = 8e-05 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 132 GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 G + +++VG L+W L F G ++EA +I D+ +GRSKG+GFVT Sbjct: 252 GSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVT 304
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 45.4 bits (106), Expect = 6e-05 Identities = 21/47 (44%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG L+ + + ++ F FG I +A ++ D TG+SKGYGFV+F Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V+ GG+ + +R+ F FG I+E + D KGY FV F Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRF 256
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 45.1 bits (105), Expect = 8e-05 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXG 332 VFVG L ++ + + +HF G I+ I+ DK+TG KG+G+V F Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348 Query: 333 TPVINGRR 356 + GR+ Sbjct: 349 NSELMGRK 356
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 45.1 bits (105), Expect = 8e-05 Identities = 23/47 (48%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + +R F R+G + E II+D+ TG SKGYGFV+F Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 44.7 bits (104), Expect = 1e-04 Identities = 26/72 (36%), Positives = 37/72 (51%) Frame = +3 Query: 78 PDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKL 257 P T G + A +G ++FVGG++ +T + L F +G + II D+ Sbjct: 10 PSATPGGGLETPLAAPKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR- 68 Query: 258 TGRSKGYGFVTF 293 G SKGYGFVTF Sbjct: 69 AGVSKGYGFVTF 80
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/53 (33%), Positives = 32/53 (60%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D +L VFVG + +E ++ L++ F G ++ ++ D+ TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 44.3 bits (103), Expect = 1e-04 Identities = 18/53 (33%), Positives = 32/53 (60%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D +L VFVG + +E ++ L++ F G ++ ++ D+ TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 43.9 bits (102), Expect = 2e-04 Identities = 18/53 (33%), Positives = 32/53 (60%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D +L VFVG + +E ++ L++ F G ++ ++ D+ TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/77 (29%), Positives = 39/77 (50%) Frame = +3 Query: 60 ASRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAV 239 A R RP+ P+ QP +++VG + W+ L + F G ++ A Sbjct: 174 APRGSRPERA----PRTFQPTY--------RIYVGNIPWDIDDARLEQVFSEHGKVVSAR 221 Query: 240 IISDKLTGRSKGYGFVT 290 ++ D+ +GRS+G+GFVT Sbjct: 222 VVFDRESGRSRGFGFVT 238 Score = 38.5 bits (88), Expect = 0.007 Identities = 18/47 (38%), Positives = 31/47 (65%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L ++ + L + F++ G + A +I ++ T RS+G+GFVT Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVT 144
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 43.9 bits (102), Expect = 2e-04 Identities = 18/53 (33%), Positives = 32/53 (60%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D +L VFVG + +E ++ L++ F G ++ ++ D+ TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 43.9 bits (102), Expect = 2e-04 Identities = 18/53 (33%), Positives = 32/53 (60%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D +L VFVG + +E ++ L++ F G ++ ++ D+ TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 43.9 bits (102), Expect = 2e-04 Identities = 18/53 (33%), Positives = 32/53 (60%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D +L VFVG + +E ++ L++ F G ++ ++ D+ TG+ KGYGF + Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 43.5 bits (101), Expect = 2e-04 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +3 Query: 105 QQVQPAAAFGDTTLTKV-FVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 QQV+ G T V +VG L + L+ +FE+FG +L + K TG SKGYG Sbjct: 30 QQVKKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYG 89 Query: 282 FVTF 293 FV F Sbjct: 90 FVEF 93
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 43.5 bits (101), Expect = 2e-04 Identities = 17/47 (36%), Positives = 29/47 (61%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +++VG + W L + F G ++ A ++ D+ TGRS+G+GFVT Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVT 277 Score = 37.4 bits (85), Expect = 0.016 Identities = 18/47 (38%), Positives = 30/47 (63%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 K+FVG L ++ + L FE+ G + A +I ++ T +S+G+GFVT Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVT 183
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 43.5 bits (101), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+ +T ++ +RE+F FG++ + D T + +G+ F+TF Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 220
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 43.5 bits (101), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+FVGGL+ +T ++ +RE+F FG++ + D T + +G+ F+TF Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 82
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 43.5 bits (101), Expect = 2e-04 Identities = 23/47 (48%), Positives = 33/47 (70%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV GL+ +T ++TLRE FE + A I++D+ TG SKG+GFV F Sbjct: 555 LFVRGLSEDTTEETLRESFE---GSISARIVTDRDTGSSKGFGFVDF 598
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 43.1 bits (100), Expect = 3e-04 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXX 329 K++V L+W LR+ F + A +I D+ +GRS+G+GF+TF Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 330 GTPV-INGRRANCNLA 374 V + GR N+A Sbjct: 278 MNEVELEGRPLRLNVA 293 Score = 36.2 bits (82), Expect = 0.035 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +++VG L + L E F G + I+ D++T RS+G+ FVT Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVT 161
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 43.1 bits (100), Expect = 3e-04 Identities = 23/52 (44%), Positives = 30/52 (57%) Frame = +3 Query: 138 TTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T T V+V LA T D L+ F +G I AV++ D G+SKG+GFV F Sbjct: 212 TKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNF 262 Score = 36.2 bits (82), Expect = 0.035 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = +3 Query: 120 AAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 A FG+T+L +VG L + L + F + G ++ + D +T RS GYG+V F Sbjct: 30 ATQFGNTSL---YVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNF 84 Score = 32.3 bits (72), Expect = 0.51 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L L + F FG+I+ + D +G+SKGYGFV + Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQY 171
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/48 (41%), Positives = 33/48 (68%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL ET++ L+ F + G I E ++I D+ T +S+G+ F+TF Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITF 55
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 42.7 bits (99), Expect = 4e-04 Identities = 19/49 (38%), Positives = 33/49 (67%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T+VFVG + + ++D L FE+ G I + ++ D L+G+++GY F+TF Sbjct: 165 TEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITF 213
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 42.4 bits (98), Expect = 5e-04 Identities = 18/52 (34%), Positives = 33/52 (63%) Frame = +3 Query: 138 TTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++ K+FVG + ++ +R +FE+ G++LE +I DK TG+ +G FV + Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168 Score = 32.7 bits (73), Expect = 0.39 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 10/104 (9%) Frame = +3 Query: 12 RHSAPSSCCVVEVGT*-----ASRKKRPDMTMLGQPQQVQPAAAFGD-----TTLTKVFV 161 R CC V+ T A R +T+ G VQ A G+ T K+FV Sbjct: 156 RTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFV 215 Query: 162 GGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 G L + + + E F +FG + + ++ D+ +S+G GFV + Sbjct: 216 GSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKY 258
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 42.4 bits (98), Expect = 5e-04 Identities = 22/47 (46%), Positives = 33/47 (70%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV GL+ +T ++TL+E FE + A I++D+ TG SKG+GFV F Sbjct: 570 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDF 613
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 42.4 bits (98), Expect = 5e-04 Identities = 22/47 (46%), Positives = 33/47 (70%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV GL+ +T ++TL+E FE + A I++D+ TG SKG+GFV F Sbjct: 576 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDF 619
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 42.4 bits (98), Expect = 5e-04 Identities = 26/72 (36%), Positives = 38/72 (52%) Frame = +3 Query: 78 PDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKL 257 PD GQ QP+ T++FVG + + +D L FE+ G I + ++ D L Sbjct: 59 PDSVYSGQ----QPSVG------TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPL 108 Query: 258 TGRSKGYGFVTF 293 TG ++GY FVTF Sbjct: 109 TGLNRGYAFVTF 120
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 42.4 bits (98), Expect = 5e-04 Identities = 26/72 (36%), Positives = 38/72 (52%) Frame = +3 Query: 78 PDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKL 257 PD GQ QP+ T++FVG + + +D L FE+ G I + ++ D L Sbjct: 149 PDSVYSGQ----QPSVG------TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPL 198 Query: 258 TGRSKGYGFVTF 293 TG ++GY FVTF Sbjct: 199 TGLNRGYAFVTF 210
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 42.4 bits (98), Expect = 5e-04 Identities = 26/72 (36%), Positives = 38/72 (52%) Frame = +3 Query: 78 PDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKL 257 PD GQ QP+ T++FVG + + +D L FE+ G I + ++ D L Sbjct: 149 PDSVYSGQ----QPSVG------TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPL 198 Query: 258 TGRSKGYGFVTF 293 TG ++GY FVTF Sbjct: 199 TGLNRGYAFVTF 210
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 42.4 bits (98), Expect = 5e-04 Identities = 22/47 (46%), Positives = 33/47 (70%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV GL+ +T ++TL+E FE + A I++D+ TG SKG+GFV F Sbjct: 573 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDF 616
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 42.0 bits (97), Expect = 6e-04 Identities = 19/45 (42%), Positives = 29/45 (64%) Frame = +3 Query: 159 VGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V L+ +T ++ LR+ F RFG I + DK TGR+KG+ FV++ Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 42.0 bits (97), Expect = 6e-04 Identities = 20/66 (30%), Positives = 38/66 (57%) Frame = +3 Query: 96 GQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKG 275 G+P + A + +FVG L+++ D LR+HF+ GDI++ + + + +G+ KG Sbjct: 222 GRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKG 281 Query: 276 YGFVTF 293 + F+ F Sbjct: 282 FAFIDF 287
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 42.0 bits (97), Expect = 6e-04 Identities = 20/47 (42%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVG L +ET L+EHF + G I +++ + TG+ KG+GFV F Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 41.6 bits (96), Expect = 8e-04 Identities = 24/53 (45%), Positives = 33/53 (62%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D LT++FV T +D LRE F+ +GDI II +K+TG SKG G+V + Sbjct: 117 DEELTRIFVMIPKSYTEED-LREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY 168 Score = 36.2 bits (82), Expect = 0.035 Identities = 18/38 (47%), Positives = 22/38 (57%) Frame = +3 Query: 180 THKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T + LRE F FGDI + ++ DK T SKG FV F Sbjct: 36 TSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKF 73
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 41.6 bits (96), Expect = 8e-04 Identities = 24/53 (45%), Positives = 33/53 (62%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D LT++FV T +D LRE F+ +GDI II +K+TG SKG G+V + Sbjct: 117 DEELTRIFVMIPKSYTEED-LREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY 168 Score = 37.4 bits (85), Expect = 0.016 Identities = 18/38 (47%), Positives = 22/38 (57%) Frame = +3 Query: 180 THKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T + LRE F FGDI + ++ DK T SKG FV F Sbjct: 36 TPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKF 73
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 41.6 bits (96), Expect = 8e-04 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXG 332 VFVG L + + L EHF G I+ I+ + LTG +G+G+V F Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 346 Query: 333 TPVINGRR 356 + GR+ Sbjct: 347 NSELMGRK 354
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 41.6 bits (96), Expect = 8e-04 Identities = 21/54 (38%), Positives = 28/54 (51%) Frame = +3 Query: 132 GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 GD T + V L +D LR F G++ A +I DK+ G S GYGFV + Sbjct: 15 GDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68 Score = 34.3 bits (77), Expect = 0.13 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +++ GL + + + F RFG I+ + ++ D+ TG S+G F+ F Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154 Score = 32.0 bits (71), Expect = 0.67 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +F+ L + + L + F FG + +I D T + KG+GFVT Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/47 (44%), Positives = 33/47 (70%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV GL+ +T ++TL+E F+ + A I++D+ TG SKG+GFV F Sbjct: 574 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDF 617
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/47 (44%), Positives = 33/47 (70%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV GL+ +T ++TL+E F+ + A I++D+ TG SKG+GFV F Sbjct: 573 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDF 616
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/47 (44%), Positives = 33/47 (70%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV GL+ +T ++TL+E F+ + A I++D+ TG SKG+GFV F Sbjct: 575 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDF 618
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF-XXXXXXXXX 320 +T + V L + T DTLR FE++G + + I D+ T S+G+ FV F Sbjct: 12 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 71 Query: 321 XXXGTPVINGRRANCNLASLG 383 V++GR +A G Sbjct: 72 DAMDGAVLDGRELRVQMARYG 92
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF-XXXXXXXXX 320 +T + V L + T DTLR FE++G + + I D+ T S+G+ FV F Sbjct: 12 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 71 Query: 321 XXXGTPVINGRRANCNLASLG 383 V++GR +A G Sbjct: 72 DAMDGAVLDGRELRVQMARYG 92
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF-XXXXXXXXX 320 +T + V L + T DTLR FE++G + + I D+ T S+G+ FV F Sbjct: 12 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 71 Query: 321 XXXGTPVINGRRANCNLASLG 383 V++GR +A G Sbjct: 72 DAMDGAVLDGRELRVQMARYG 92
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF-XXXXXXXXX 320 +T + V L + T DTLR FE++G + + I D+ T S+G+ FV F Sbjct: 12 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 71 Query: 321 XXXGTPVINGRRANCNLASLG 383 V++GR +A G Sbjct: 72 DAMDGAVLDGRELRVQMARYG 92
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXG 332 VFVG L ++ L EHF G I+ I+ + LTG +G+G+V F Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 352 Query: 333 TPVINGRR 356 + GR+ Sbjct: 353 NSELMGRK 360
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 41.2 bits (95), Expect = 0.001 Identities = 32/91 (35%), Positives = 47/91 (51%) Frame = +3 Query: 21 APSSCCVVEVGT*ASRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLR 200 A SC E+ R R + + G PQ + TL FV GL+ +T ++TL+ Sbjct: 466 AMDSCNNTEI---EGRSIRLEFSQGGGPQGGGRGGSAQSKTL---FVRGLSEDTTEETLK 519 Query: 201 EHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 E F+ + A I++D+ TG SKG+GFV F Sbjct: 520 EAFD---GSVNARIVTDRDTGASKGFGFVDF 547
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF-XXXXXXXXX 320 +T + V L + T DTLR FE++G + + I D+ T S+G+ FV F Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72 Query: 321 XXXGTPVINGRRANCNLASLG 383 V++GR +A G Sbjct: 73 DAMDGAVLDGRELRVQMARYG 93
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/53 (43%), Positives = 33/53 (62%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D LT++FV T +D LRE F+ +GDI +I +K+TG SKG G+V + Sbjct: 117 DEELTRIFVMIPKSYTEED-LREKFKVYGDIEYCSVIKNKVTGESKGLGYVRY 168 Score = 40.8 bits (94), Expect = 0.001 Identities = 19/38 (50%), Positives = 23/38 (60%) Frame = +3 Query: 180 THKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T + LREHF FGDI + ++ DK T SKG FV F Sbjct: 36 TSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKF 73
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 40.8 bits (94), Expect = 0.001 Identities = 21/47 (44%), Positives = 28/47 (59%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG L +E +++L +HFE GDI II D T KG+ +V F Sbjct: 361 VFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQF 407
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 40.8 bits (94), Expect = 0.001 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFV + ++ +++L HF +FG + A+ + DK TG +KG FV F Sbjct: 292 VFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338 Score = 32.7 bits (73), Expect = 0.39 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV + + + L + F F I AV++ D RS+G+GFV+F Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDT-NKRSRGFGFVSF 73
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/47 (42%), Positives = 28/47 (59%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVG L +E +++L +HFE GDI II D T KG+ +V F Sbjct: 281 IFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQF 327
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = +3 Query: 132 GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 G T +FVGG+ + ++ +RE F ++G + E II+ + G KGYGFV F Sbjct: 42 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYR-GGICKGYGFVYF 94
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/64 (34%), Positives = 33/64 (51%) Frame = +3 Query: 102 PQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 P +Q AA D+ T + V L ++ R F G+I ++ DK+TG+S GYG Sbjct: 37 PSPMQTGAATDDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95 Query: 282 FVTF 293 FV + Sbjct: 96 FVNY 99 Score = 35.4 bits (80), Expect = 0.061 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + L + F ++G I+ + I+ D++TG S+G GF+ F Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV L+ ++ + L + F FG + +I D T + KG+GFVT Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 349
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/64 (34%), Positives = 33/64 (51%) Frame = +3 Query: 102 PQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 P +Q AA D+ T + V L ++ R F G+I ++ DK+TG+S GYG Sbjct: 25 PSPMQTGAATDDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 83 Query: 282 FVTF 293 FV + Sbjct: 84 FVNY 87 Score = 35.4 bits (80), Expect = 0.061 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + L + F ++G I+ + I+ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV L+ ++ + L + F FG + +I D T + KG+GFVT Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 337
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/47 (42%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVG L +TLR F+ F L ++ D TG S+GYGFV+F Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 209
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + + F R+G + E II+++ TG SKGYGFV+F Sbjct: 372 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 417 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + + F R+G + E II+++ TG SKGYGFV+F Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 252 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + + F R+G + E II+++ TG SKGYGFV+F Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + + F R+G + E II+++ TG SKGYGFV+F Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + + F R+G + E II+++ TG SKGYGFV+F Sbjct: 207 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 252 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + + F R+G + E II+++ TG SKGYGFV+F Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 40.0 bits (92), Expect = 0.002 Identities = 17/47 (36%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVGGL +E + + F ++G+I+ ++ DK TG+SKG+ F+ + Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCY 84
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +3 Query: 132 GDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 GD T + V L ++ LR F G++ A +I DK+ G S GYGFV + Sbjct: 15 GDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68 Score = 34.3 bits (77), Expect = 0.13 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +++ GL + + + F RFG I+ + ++ D+ TG S+G F+ F Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154 Score = 32.0 bits (71), Expect = 0.67 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +F+ L + + L + F FG + +I D T + KG+GFVT Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 40.0 bits (92), Expect = 0.002 Identities = 17/35 (48%), Positives = 26/35 (74%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++L F +G++LE+ II D+ T RS+G+GFVTF Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTF 35
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = +3 Query: 96 GQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKG 275 G+P V+P ++F+G L E K L++ F+ FG+++E I S G+ Sbjct: 321 GEPGDVEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQNFGNVVELRINSG---GKLPN 377 Query: 276 YGFVTF 293 +GFV F Sbjct: 378 FGFVVF 383
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 40.0 bits (92), Expect = 0.002 Identities = 19/45 (42%), Positives = 27/45 (60%) Frame = +3 Query: 159 VGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V L E ++D LR+ F + G ++ I DK+TG KG+ FVTF Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 40.0 bits (92), Expect = 0.002 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVGG+ + + F R+G + E II+++ TG SKGYGFV+F Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 39.7 bits (91), Expect = 0.003 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D + T + V L +D + F GDI ++ DK+TG+S GYGFV + Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87 Score = 34.3 bits (77), Expect = 0.13 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV L+ E + L + F FG + +I D T + KG+GFVT Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 331 Score = 34.3 bits (77), Expect = 0.13 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + + + F ++G I+ + I+ D+ TG S+G GF+ F Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 39.7 bits (91), Expect = 0.003 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D + T + V L +D + F GDI ++ DK+TG+S GYGFV + Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87 Score = 35.0 bits (79), Expect = 0.079 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + + + F ++G I+ + I+ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173 Score = 34.3 bits (77), Expect = 0.13 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV L+ E + L + F FG + +I D T + KG+GFVT Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 331
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 39.7 bits (91), Expect = 0.003 Identities = 21/63 (33%), Positives = 33/63 (52%) Frame = +3 Query: 105 QQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGF 284 + +QP D +V L+ +T + L+E F FG I + DK TG+SKG+ F Sbjct: 227 ESMQPNRRADDNATIRVT--NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAF 284 Query: 285 VTF 293 ++F Sbjct: 285 ISF 287
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 39.7 bits (91), Expect = 0.003 Identities = 21/63 (33%), Positives = 33/63 (52%) Frame = +3 Query: 105 QQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGF 284 + +QP D +V L+ +T + L+E F FG I + DK TG+SKG+ F Sbjct: 227 ESMQPNRRADDNATIRVT--NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAF 284 Query: 285 VTF 293 ++F Sbjct: 285 ISF 287
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 39.7 bits (91), Expect = 0.003 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHF-ERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVG LA + L E F R+ A I+ D++TG SKGYGFV F Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKF 212 Score = 38.1 bits (87), Expect = 0.009 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 72 KRPDMTMLGQPQQVQPAAA-FGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIIS 248 KR M+ P Q QP+ F D T VF+GGL+ +D LR +F+ FG I+ I Sbjct: 287 KRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPV 346 Query: 249 DKLTG 263 K G Sbjct: 347 GKCCG 351
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 39.3 bits (90), Expect = 0.004 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVG + + + + +HF+ G I ++ D+ TG KGYG++ F Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEF 112
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 39.3 bits (90), Expect = 0.004 Identities = 16/47 (34%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV G+A +D L++ F +FG + I+ + +T S+G+GF++F Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 39.3 bits (90), Expect = 0.004 Identities = 20/47 (42%), Positives = 28/47 (59%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFV LA L + FE+ G + +A I+ DK++GRSKG +V F Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVGG+A L F ++G IL +I DK G GYGF+++ Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISY 243
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 38.9 bits (89), Expect = 0.005 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +++G + ++ LRE+F +FG + + K TG SKGY +V F Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 38.9 bits (89), Expect = 0.005 Identities = 25/70 (35%), Positives = 34/70 (48%) Frame = +3 Query: 84 MTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTG 263 M +G QP F DT + VFVGGL+ ++ L+ F+ FG+I+ I Sbjct: 282 MPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI------P 335 Query: 264 RSKGYGFVTF 293 KG GFV F Sbjct: 336 PGKGCGFVQF 345 Score = 29.6 bits (65), Expect = 3.3 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHF-ERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVG L+ ++ + F R+ A I++D T S+GYGFV F Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 38.9 bits (89), Expect = 0.005 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Frame = +3 Query: 90 MLGQPQQVQPAAAFGDT--TLTKVFVGGLAWETHKDTLREHFERFGDILEAV-IISDKLT 260 + G+P +V A+A +F+G L E + L + F FG IL+ I+ D T Sbjct: 79 LYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT 138 Query: 261 GRSKGYGFVTF 293 G SKGY F+ F Sbjct: 139 GNSKGYAFINF 149 Score = 37.4 bits (85), Expect = 0.016 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V+VGGL + + L E F + G ++ + D++TG+ +GYGFV F Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 38.9 bits (89), Expect = 0.005 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = +3 Query: 99 QPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGY 278 Q QVQ A + +V+VG +++E +DT+R F FG I + D +T + KG+ Sbjct: 116 QRTQVQRQQALA--LMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGF 173 Query: 279 GFVTF 293 FV + Sbjct: 174 AFVEY 178 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/65 (24%), Positives = 29/65 (44%) Frame = +3 Query: 99 QPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGY 278 Q QQV + +++V + + ++ ++ FE FG IL + KGY Sbjct: 211 QAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGY 270 Query: 279 GFVTF 293 GF+ + Sbjct: 271 GFIEY 275
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 38.9 bits (89), Expect = 0.005 Identities = 19/49 (38%), Positives = 29/49 (59%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T ++V L D L + F ++G+I++ I+ DKLTGR +G FV F Sbjct: 188 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRF 236
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 38.9 bits (89), Expect = 0.005 Identities = 16/47 (34%), Positives = 31/47 (65%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+GGL +E + + F ++G+I+ ++ DK TG+SKG+ F+ + Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCY 84
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 38.5 bits (88), Expect = 0.007 Identities = 19/45 (42%), Positives = 28/45 (62%) Frame = +3 Query: 159 VGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V GL+ T + LRE F R+G + ++ D+ TGRS+G+ FV F Sbjct: 121 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 165
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 38.5 bits (88), Expect = 0.007 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V+VG + + + L+ HF G + I+ DK TG KG+ ++ F Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 38.5 bits (88), Expect = 0.007 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Frame = +3 Query: 120 AAAFGDTTLTK-------VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGY 278 AAA TTL +F+ LA ET + L + F FG + I+ D T + KGY Sbjct: 386 AAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGY 445 Query: 279 GFVT 290 GFV+ Sbjct: 446 GFVS 449
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 38.5 bits (88), Expect = 0.007 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V L H+ L ++F +FGD+ E + +K TG S+ YGF+ F Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEF 139
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 38.5 bits (88), Expect = 0.007 Identities = 19/45 (42%), Positives = 28/45 (62%) Frame = +3 Query: 159 VGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V GL+ T + LRE F R+G + ++ D+ TGRS+G+ FV F Sbjct: 123 VFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYF 167
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 38.5 bits (88), Expect = 0.007 Identities = 21/64 (32%), Positives = 32/64 (50%) Frame = +3 Query: 102 PQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYG 281 P +Q A D+ T + V L ++ R F G+I ++ DK+TG+S GYG Sbjct: 32 PSPMQTGATTDDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90 Query: 282 FVTF 293 FV + Sbjct: 91 FVNY 94 Score = 35.4 bits (80), Expect = 0.061 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + L + F ++G I+ + I+ D++TG S+G GF+ F Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV L+ ++ + L + F FG + +I D T + KG+GFVT Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVT 344
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 38.5 bits (88), Expect = 0.007 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Frame = +3 Query: 120 AAAFGDTTLTK-------VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGY 278 AAA TTL +F+ LA ET + L + F FG + I+ D T + KGY Sbjct: 422 AAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGY 481 Query: 279 GFVT 290 GFV+ Sbjct: 482 GFVS 485
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 38.1 bits (87), Expect = 0.009 Identities = 21/47 (44%), Positives = 25/47 (53%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L L E F FG IL + D +TGRSKGYGFV F Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQF 183
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 37.7 bits (86), Expect = 0.012 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T ++V L D L + F ++G+I++ I+ DKLTG+ +G FV F Sbjct: 171 TNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRF 219
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 37.7 bits (86), Expect = 0.012 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V++ + + L+E F +FG L +++D+ +G+SKG+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 32.3 bits (72), Expect = 0.51 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + ++VG L + + L E F G IL + D +T RS GY +V F Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + LR+ F FG I A ++ + GRSKG+GFV F Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340 Score = 32.0 bits (71), Expect = 0.67 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L L + F FG+IL ++ D+ SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 37.7 bits (86), Expect = 0.012 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V++ + + L+E F +FG L +++D+ +G+SKG+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 32.3 bits (72), Expect = 0.51 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + ++VG L + + L E F G IL + D +T RS GY +V F Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + LR+ F FG I A ++ + GRSKG+GFV F Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340 Score = 32.0 bits (71), Expect = 0.67 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L L + F FG+IL ++ D+ SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 37.4 bits (85), Expect = 0.016 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V++ E ++L+E F +FG L ++ D G+SKG+GFV++ Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSY 238 Score = 33.5 bits (75), Expect = 0.23 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 123 AAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 AA + ++VG L + + L E F G +L + D +T RS GY +V F Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF 59 Score = 32.3 bits (72), Expect = 0.51 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + LR+ F FG I A ++ + GRSKG+GFV F Sbjct: 308 EKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+ L L + F FG+IL ++ D+ SKGY FV F Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHF 145
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/47 (44%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+ L L E F FG IL + D + GRSKGYGFV F Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQF 179
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/52 (40%), Positives = 27/52 (51%) Frame = +3 Query: 138 TTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 TT ++VGGLA E L F FGDI + I D T + +G+ FV F Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 54
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/52 (40%), Positives = 27/52 (51%) Frame = +3 Query: 138 TTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 TT ++VGGLA E L F FGDI + I D T + +G+ FV F Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 54
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 37.0 bits (84), Expect = 0.021 Identities = 21/47 (44%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV L T D L F RFG IL +I DK TG S Y F+ F Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEF 310
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 37.0 bits (84), Expect = 0.021 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL + D ++E FG + ++ D TG SKGY F + Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 37.0 bits (84), Expect = 0.021 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL + D ++E FG + ++ D TG SKGY F + Sbjct: 260 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY 307
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 36.6 bits (83), Expect = 0.027 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T + V L ++ L+ F G+I ++ DK+TG+S GYGFV + Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 35.4 bits (80), Expect = 0.061 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + L + F ++G I+ + I+ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173 Score = 33.5 bits (75), Expect = 0.23 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV LA + + L + F FG + +I D T + KG+GFVT Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 324
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 36.6 bits (83), Expect = 0.027 Identities = 16/49 (32%), Positives = 31/49 (63%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V++ + + L++ F +FG L +++D+ +G+SKG+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 32.3 bits (72), Expect = 0.51 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + ++VG L + + L E F G IL + D +T RS GY +V F Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + LR+ F FG I A ++ + GRSKG+GFV F Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340 Score = 32.0 bits (71), Expect = 0.67 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L L + F FG+IL ++ D+ SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 36.6 bits (83), Expect = 0.027 Identities = 16/49 (32%), Positives = 31/49 (63%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V++ + + L++ F +FG L +++D+ +G+SKG+GFV+F Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 32.3 bits (72), Expect = 0.51 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + ++VG L + + L E F G IL + D +T RS GY +V F Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + LR+ F FG I A ++ + GRSKG+GFV F Sbjct: 308 ERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340 Score = 32.0 bits (71), Expect = 0.67 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L L + F FG+IL ++ D+ SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 36.6 bits (83), Expect = 0.027 Identities = 18/69 (26%), Positives = 33/69 (47%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXX 326 +++F+ L++ +D +REHF +FG ++E + D G SKG+ + + Sbjct: 308 SRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDS-KGHSKGFAMIRYEKPASALAAFQ 366 Query: 327 XGTPVINGR 353 V GR Sbjct: 367 TDGTVFQGR 375
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 36.6 bits (83), Expect = 0.027 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG + ++ + + E F + G + ++ D TG KGYGF F Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 36.6 bits (83), Expect = 0.027 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +3 Query: 96 GQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKG 275 GQPQ + ++ V + + LR+ F +FG IL+ II ++ SKG Sbjct: 100 GQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKG 157 Query: 276 YGFVTF--XXXXXXXXXXXXGTPVINGRRANCNLAS 377 +GFVTF GT V+ GR+ N A+ Sbjct: 158 FGFVTFENSADADRAREKLHGT-VVEGRKIEVNNAT 192
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 36.6 bits (83), Expect = 0.027 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 K+F+GGL + D ++E FG + ++ D TG SKGY F + Sbjct: 208 KIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEY 255
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 36.6 bits (83), Expect = 0.027 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +++VG + + D LR E G I A ++ DK +GRS+ +GFVT Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVT 131
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 36.6 bits (83), Expect = 0.027 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V++ + LRE F FG+ L ++ D TGRS+G+GFV + Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNY 238 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D LR+ F +G I A ++++ G SKG+GFV F Sbjct: 308 DRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCF 340 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+ L L + F FG+IL ++ D+ S+GYGFV F Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHF 145 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 L ++VG L + + L E F G I+ + D T RS GY ++ F Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINF 59
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 36.6 bits (83), Expect = 0.027 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +3 Query: 96 GQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKG 275 GQPQ + ++ V + + LR+ F +FG IL+ II ++ SKG Sbjct: 99 GQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKG 156 Query: 276 YGFVTF--XXXXXXXXXXXXGTPVINGRRANCNLAS 377 +GFVTF GT V+ GR+ N A+ Sbjct: 157 FGFVTFENSADADRAREKLHGT-VVEGRKIEVNNAT 191
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 36.6 bits (83), Expect = 0.027 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T + V L ++ L+ F G+I ++ DK+TG+S GYGFV + Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 35.4 bits (80), Expect = 0.061 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + L + F ++G I+ + I+ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173 Score = 33.5 bits (75), Expect = 0.23 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV LA + + L + F FG + +I D T + KG+GFVT Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 323
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 36.6 bits (83), Expect = 0.027 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T + V L ++ L+ F G+I ++ DK+TG+S GYGFV + Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 35.4 bits (80), Expect = 0.061 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + L + F ++G I+ + I+ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173 Score = 33.5 bits (75), Expect = 0.23 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV LA + + L + F FG + +I D T + KG+GFVT Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 323
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 36.2 bits (82), Expect = 0.035 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L + L + F FGDIL + I +D+ G+SKG+GFV F Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHF 172 Score = 32.0 bits (71), Expect = 0.67 Identities = 21/77 (27%), Positives = 34/77 (44%) Frame = +3 Query: 63 SRKKRPDMTMLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVI 242 ++KK M +L + + +FV L + L E F +G I A + Sbjct: 293 AQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKV 352 Query: 243 ISDKLTGRSKGYGFVTF 293 + + G+SKG+GFV F Sbjct: 353 MRTE-NGKSKGFGFVCF 368
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 36.2 bits (82), Expect = 0.035 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Frame = +3 Query: 96 GQPQQVQPAA-AFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSK 272 GQ Q Q + + +T ++ V + + LR+ F +FG IL+ II ++ SK Sbjct: 103 GQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SK 160 Query: 273 GYGFVTF--XXXXXXXXXXXXGTPVINGRRANCNLAS 377 G+GFVTF GT V+ GR+ N A+ Sbjct: 161 GFGFVTFENSADADRAREKLHGT-VVEGRKIEVNNAT 196
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 36.2 bits (82), Expect = 0.035 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRS--KGYGFVTF 293 T +K+ V + ++ H +RE F FG+ L+ V + K+TG +G+GFV F Sbjct: 830 TTSKILVRNIPFQAHSREIRELFSTFGE-LKTVRLPKKMTGTGTHRGFGFVDF 881 Score = 35.8 bits (81), Expect = 0.046 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = +3 Query: 90 MLGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRS 269 +LG+ ++ + A G ++FV L + + ++ L + F ++G + E D LT + Sbjct: 388 ILGENEEEEDLAESG-----RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKP 442 Query: 270 KGYGFVTF 293 KG+ F+TF Sbjct: 443 KGFAFITF 450
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 36.2 bits (82), Expect = 0.035 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V++ + + + L+E F ++G L +++D G+SKG+GFV+F Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSF 238 Score = 33.1 bits (74), Expect = 0.30 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + ++VG L + + L E F G IL + D +T RS GY +V F Sbjct: 10 MASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 59 Score = 32.0 bits (71), Expect = 0.67 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L L + F FG+IL ++ D+ SKGYGFV F Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + LR+ F FG I A ++ + GRSKG+GFV F Sbjct: 308 ERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCF 340
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 36.2 bits (82), Expect = 0.035 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG L +E +++L +HF G I I+ D T KG+ +V F Sbjct: 230 VFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQF 276
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 36.2 bits (82), Expect = 0.035 Identities = 15/68 (22%), Positives = 28/68 (41%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXG 332 ++VG + + + L HF G + I+ DK +G KG+ ++ F Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 228 Query: 333 TPVINGRR 356 + GR+ Sbjct: 229 ESLFRGRQ 236
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 36.2 bits (82), Expect = 0.035 Identities = 15/68 (22%), Positives = 28/68 (41%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXG 332 ++VG + + + L HF G + I+ DK +G KG+ ++ F Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 232 Query: 333 TPVINGRR 356 + GR+ Sbjct: 233 ESLFRGRQ 240
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 36.2 bits (82), Expect = 0.035 Identities = 15/68 (22%), Positives = 28/68 (41%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXG 332 ++VG + + + L HF G + I+ DK +G KG+ ++ F Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 232 Query: 333 TPVINGRR 356 + GR+ Sbjct: 233 ESLFRGRQ 240
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 36.2 bits (82), Expect = 0.035 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG L +E +++L E F GD+ I+ D T KG+ +V F Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQF 322
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 36.2 bits (82), Expect = 0.035 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+G + + + + + EHF+ G I++ I DK T + K + ++ F Sbjct: 103 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEF 149
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 36.2 bits (82), Expect = 0.035 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 159 VGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V GL+ T + LRE F ++G I + I+ D+ + RS+G+ FV F Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 36.2 bits (82), Expect = 0.035 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 159 VGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V GL+ T + LRE F ++G I + I+ D+ + RS+G+ FV F Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 36.2 bits (82), Expect = 0.035 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 159 VGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V GL+ T + LRE F ++G I + I+ D+ + RS+G+ FV F Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 166
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 36.2 bits (82), Expect = 0.035 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Frame = +3 Query: 99 QPQQVQPAAAFGDTTLTKV------FVGGLAWETHKDTLREHFERFGDILEAVIISDKLT 260 QP++ P + + K+ F+ + + + ++ R+ F FG++ E + D T Sbjct: 323 QPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRT 382 Query: 261 GRSKGYGFVTF 293 G+SKG+ +V F Sbjct: 383 GQSKGFAYVLF 393
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 35.8 bits (81), Expect = 0.046 Identities = 18/47 (38%), Positives = 28/47 (59%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+ L E + L+ F FG I A I++D+ G+SKG+GFV + Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCY 411 Score = 33.5 bits (75), Expect = 0.23 Identities = 19/47 (40%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+ L L + F FG IL + D+L G +KGYGFV F Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHF 215 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T ++VG L + L E F G + + D +T RS GY +V F Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 35.8 bits (81), Expect = 0.046 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFV 287 ++VG L+++ + L F +G + + +D+ TGR +G+GFV Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFV 47
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 35.8 bits (81), Expect = 0.046 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T ++V L D L F ++G I++ I+ DKLTGR +G FV + Sbjct: 213 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 261
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 35.8 bits (81), Expect = 0.046 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T ++V L D L F ++G I++ I+ DKLTGR +G FV + Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRY 259
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 35.8 bits (81), Expect = 0.046 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Frame = +3 Query: 90 MLGQPQQVQPAAAF-GDTTL--TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLT 260 + G+P +V A+ G TL +FVG L + L + F G +++A ++ Sbjct: 77 LFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN 136 Query: 261 GRSKGYGFVTF 293 GRSKGYGFV++ Sbjct: 137 GRSKGYGFVSY 147
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 35.8 bits (81), Expect = 0.046 Identities = 19/49 (38%), Positives = 28/49 (57%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V+V + + L+E FE +G I ++S K G+SKG+GFV F Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMS-KEDGKSKGFGFVAF 230 Score = 34.3 bits (77), Expect = 0.13 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D LR F +G+I A +++D+ GRSKG+GFV F Sbjct: 301 DRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCF 334 Score = 33.5 bits (75), Expect = 0.23 Identities = 18/47 (38%), Positives = 25/47 (53%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+ L + + F FG+IL + +D+ G SKGYGFV F Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHF 137 Score = 33.1 bits (74), Expect = 0.30 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + ++VG L + ++ L + F G +L + D +T RS GY +V F Sbjct: 1 MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNF 50
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 35.8 bits (81), Expect = 0.046 Identities = 15/48 (31%), Positives = 29/48 (60%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++F+ +++E ++ R F ++G + E I D TG+SKG+ +V F Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQF 358
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 35.8 bits (81), Expect = 0.046 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +3 Query: 135 DTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFV 287 +T TK+FVG L +T +RE F+++G ++E I+ + YGFV Sbjct: 82 NTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFV 124 Score = 31.6 bits (70), Expect = 0.87 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFV 287 K+F+G L +T LR FE++G ++E ++ K YGFV Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFV 45
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 35.4 bits (80), Expect = 0.061 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FVG L D L E F + G + + ++++K + +G+G+VTF Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 51 Score = 32.0 bits (71), Expect = 0.67 Identities = 16/66 (24%), Positives = 29/66 (43%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXXXG 332 VF+ L++++ ++ L E ++FGD+ ++ T SKG F F Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 385 Query: 333 TPVING 350 +P G Sbjct: 386 SPEAEG 391
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 35.4 bits (80), Expect = 0.061 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T +++ GL T L + + +G I+ I DK T + KGYGFV F Sbjct: 62 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 35.4 bits (80), Expect = 0.061 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +3 Query: 63 SRKKRPDMTMLGQPQQVQPAAAFGDTTLT-KVFVGGLAWETHKDTLREHFERFGDILEAV 239 + +++P+ T + Q+ + + T ++F+ + + +D R+ F +G++ E Sbjct: 301 TEQQQPEETEVETSQESEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVH 360 Query: 240 IISDKLTGRSKGYGFVTF 293 I D TG+SKG+ +V F Sbjct: 361 IAVDTRTGQSKGFAYVLF 378
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 35.4 bits (80), Expect = 0.061 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T +++ GL T L + + +G I+ I DK T + KGYGFV F Sbjct: 62 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDF 110
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 35.4 bits (80), Expect = 0.061 Identities = 16/47 (34%), Positives = 29/47 (61%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++V GL + L + F ++G I+ + I+ D++TG S+G GF+ F Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173 Score = 34.7 bits (78), Expect = 0.10 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +3 Query: 186 KDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++ L+ F G+I ++ DK+TG+S GYGFV + Sbjct: 52 QEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Score = 33.5 bits (75), Expect = 0.23 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVT 290 +FV LA + + L + F FG + +I D T + KG+GFVT Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 323
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 35.4 bits (80), Expect = 0.061 Identities = 20/67 (29%), Positives = 36/67 (53%) Frame = +3 Query: 93 LGQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSK 272 LG+ ++ + A G ++FV L++ + ++ L + F +G + E D LT + K Sbjct: 387 LGENEEEEDLADSG-----RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPK 441 Query: 273 GYGFVTF 293 G+ FVTF Sbjct: 442 GFAFVTF 448 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRS--KGYGFVTF 293 T +K+ V + ++ ++ +RE F FG+ L+ V + K+TG +G+GFV F Sbjct: 822 TTSKILVRNIPFQANQREIRELFSTFGE-LKTVRLPKKMTGTGAHRGFGFVDF 873
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 35.0 bits (79), Expect = 0.079 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+G + + + + + EHF+ G I+ I DK T + K + ++ F Sbjct: 63 VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEF 109
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 35.0 bits (79), Expect = 0.079 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG L +E +++L +HF G I I+ D T KG+ +V F Sbjct: 261 VFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQF 307
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 35.0 bits (79), Expect = 0.079 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T V++ + LRE F FG+ L ++ D +GRS+G+GFV + Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNY 238 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+ L L + F FG+IL ++ D+ S+GYGFV F Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHF 145 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D LR+ F +G I A ++++ G SKG+GFV F Sbjct: 308 DRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCF 340
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 35.0 bits (79), Expect = 0.079 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV L T + L+ F RFG IL +I DK TG S Y F+ F Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEF 296
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 35.0 bits (79), Expect = 0.079 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = +3 Query: 96 GQPQQVQPAAAFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKG 275 G+ ++P ++F+G L E K L++ F+ +G+++E I S G+ Sbjct: 323 GEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSG---GKLPN 379 Query: 276 YGFVTF 293 +GFV F Sbjct: 380 FGFVVF 385
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 35.0 bits (79), Expect = 0.079 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++FVG L + ++ L+E F FG+++E I + + G+ +GFV F Sbjct: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 379
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 35.0 bits (79), Expect = 0.079 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +3 Query: 150 KVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++FVG L + ++ L+E F FG+++E I + + G+ +GFV F Sbjct: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 379
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 34.7 bits (78), Expect = 0.10 Identities = 15/47 (31%), Positives = 30/47 (63%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V++ + + L++ F +FG L +++D+ +G+SKG+GFV+F Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 + LR+ F FG I A ++ + GRSKG+GFV F Sbjct: 308 ERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCF 340 Score = 30.0 bits (66), Expect = 2.5 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV L + L + FG+IL ++ D+ SKGYGFV F Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHF 145
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 34.7 bits (78), Expect = 0.10 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F+G L ++ LR+ F+R+ A + D LT +S GYG++ F Sbjct: 113 LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNF 159
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 34.7 bits (78), Expect = 0.10 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T +++ GL T L + + +G I+ I DK T + KGYGFV F Sbjct: 56 TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 104
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/79 (25%), Positives = 35/79 (44%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTFXXXXXXXXXXX 326 T V++ + L+E F FG+ L ++ D +GRS+G+GFV + Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVT 249 Query: 327 XGTPVINGRRANCNLASLG 383 +NG+ N + +G Sbjct: 250 E----MNGKEVNGRMVYVG 264 Score = 32.3 bits (72), Expect = 0.51 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VF+ L L + F FGDIL ++ D+ S+GYGFV F Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHF 145 Score = 29.6 bits (65), Expect = 3.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 189 DTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 D LR+ F +G I ++++ G SKG+GFV F Sbjct: 308 DRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCF 340 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 L +++G L + + L E F G I+ + D T RS GY ++ F Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINF 59
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV L T + L F RFG IL +I DK TG S Y F+ F Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEF 296
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 34.7 bits (78), Expect = 0.10 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +FV L T + L F RFG IL +I DK TG S Y F+ F Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEF 296
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 34.7 bits (78), Expect = 0.10 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T +++ GL T L + + +G I+ I DK T + KGYGFV F Sbjct: 58 TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 106
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 34.7 bits (78), Expect = 0.10 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +++G + + L+E+F +FG + + K TG SKGY +V + Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 34.7 bits (78), Expect = 0.10 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T ++V L D L F ++G I++ I+ DKLTG+ +G FV F Sbjct: 196 TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRF 244
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 34.3 bits (77), Expect = 0.13 Identities = 15/56 (26%), Positives = 31/56 (55%) Frame = +3 Query: 126 AFGDTTLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 +F L +F+G L ++TL+ F+++ + A + D +T +S G+G++ F Sbjct: 84 SFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNF 139
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 34.3 bits (77), Expect = 0.13 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFVG LA+E ++ L +F G I I+ D T KG+ ++ F Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 34.3 bits (77), Expect = 0.13 Identities = 16/50 (32%), Positives = 30/50 (60%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 ++ ++V + ++ LR+HF + G I ++ D+ G+SKG+GFV F Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCF 351 Score = 32.7 bits (73), Expect = 0.39 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 VFV L L++ F++FG+I+ + + + G+S+GYGFV F Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQF 159 Score = 32.0 bits (71), Expect = 0.67 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +3 Query: 147 TKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T +++ L + +D LRE F FG I+ I D+ +GY FV F Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNF 248
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T T VFV + + + L+E F +G +I D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T T VFV + + + L+E F +G +I D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T T VFV + + + L+E F +G +I D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T T VFV + + + L+E F +G +I D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T T VFV + + + L+E F +G +I D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 141 TLTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T T VFV + + + L+E F +G +I D +G+SKG+GFV + Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRY 246
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 33.9 bits (76), Expect = 0.18 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = +3 Query: 153 VFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 V++G + ++ ++ + + G ++ ++ D TGRSKGY F+ F Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEF 66
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 33.9 bits (76), Expect = 0.18 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +3 Query: 180 THKDTLREHFERFGDILEAVIISDKLTGRSKGYGFVTF 293 T K L + F FG IL +++ +G SKGYGFV F Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +3 Query: 144 LTKVFVGGLAWETHKDTLREHFERFGDILEAVIISDKLTGRSKGYGFV 287 + K+F+G L E + +R FE++G +LE II K YGFV Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFV 40 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,175,884 Number of Sequences: 219361 Number of extensions: 452129 Number of successful extensions: 2081 Number of sequences better than 10.0: 332 Number of HSP's better than 10.0 without gapping: 1860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2052 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
