ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart59e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
2gb|AF394552.1| Oryza sativa alpha-expansin OsEXPA16 (EXPA16) gen... 182 7e-43
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
4dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
5ref|XM_473658.1| Oryza sativa (japonica cultivar-group), predic... 48 0.026
6gb|AF247165.1| Oryza sativa alpha-expansin OsEXPA10 mRNA, comple... 48 0.026
7emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4,... 48 0.026
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
9dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
10dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
11gb|AY111047.1| Zea mays CL11344_1 mRNA sequence 48 0.026
12ref|XM_990617.1| PREDICTED: Mus musculus hypothetical protein LO... 46 0.10
13ref|XM_977096.1| PREDICTED: Mus musculus hypothetical protein LO... 46 0.10
14gb|AY105640.1| Zea mays PCO063012 mRNA sequence 46 0.10
15emb|AL845506.6| Mouse DNA sequence from clone RP23-401M24 on chr... 46 0.10
16dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.41
17gb|AY543533.1| Triticum aestivum expansin EXPA7 mRNA, complete cds 44 0.41
18gb|AF247163.1| Oryza sativa alpha-expansin OsEXPA6 mRNA, complet... 42 1.6
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
20gb|AC092788.3| Homo sapiens BAC clone RP11-333G13 from 7, comple... 42 1.6
21gb|DQ328857.1| Pseudomonas citronellolis probable short-chain de... 42 1.6
22gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
23gb|AE012000.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.6
24gb|AC147281.4| Pan troglodytes BAC clone RP43-98P12 from chromos... 42 1.6
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
26dbj|AB196980.1| Sagittaria pygmaea SpEXPA2 mRNA for expansin, co... 42 1.6
27dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
28gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.6
29gb|AY543528.1| Triticum aestivum expansin EXPA2 mRNA, complete cds 42 1.6
30ref|NM_190673.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
31ref|XM_516098.1| PREDICTED: Pan troglodytes similar to Wnt-10a p... 40 6.4
32ref|XM_473839.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
33gb|BC004329.1| Homo sapiens wingless-type MMTV integration site ... 40 6.4
34ref|XM_581305.2| PREDICTED: Bos taurus similar to wingless-relat... 40 6.4
35ref|NM_009526.2| Mus musculus wingless-related MMTV integration ... 40 6.4
36gb|AF512540.1| Gossypium hirsutum alpha-expansin precursor (Exp2... 40 6.4
37gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 6.4
38gb|BT009885.1| Synthetic construct Homo sapiens wingless-type MM... 40 6.4
39emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
40emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
41gb|BT007456.1| Homo sapiens wingless-type MMTV integration site ... 40 6.4
42gb|DQ100329.1| Eucalyptus globulus putative alpha-expansin (EXPA... 40 6.4
43gb|AE005980.1| Caulobacter crescentus CB15 section 306 of 359 of... 40 6.4
44gb|AE005686.1| Caulobacter crescentus CB15 section 12 of 359 of ... 40 6.4
45dbj|AK075522.1| Homo sapiens cDNA PSEC0220 fis, clone HEMBA10053... 40 6.4
46gb|AY189969.1| Gossypium hirsutum expansin mRNA, complete cds 40 6.4
47gb|DQ204495.1| Gossypium hirsutum alpha-expansin 1 mRNA, complet... 40 6.4
48emb|AL512584.13| Mouse DNA sequence from clone RP23-232D1 on chr... 40 6.4
49gb|AF288082.1|AF288082 Photorhabdus luminescens strain NC19; ATC... 40 6.4
50gb|AC011446.6|AC011446 Homo sapiens chromosome 19 clone CTC-250I... 40 6.4
51dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
52gb|DQ023525.1| Gossypium hirsutum cultivar CIM707 expansin mRNA,... 40 6.4
53dbj|AB196979.1| Sagittaria pygmaea SpEXPA1 mRNA for expansin, co... 40 6.4
54gb|AC073128.5| Homo sapiens BAC clone RP11-647O5 from 2, complet... 40 6.4
55gb|AC068291.6| Homo sapiens BAC clone RP11-670I21 from 2, comple... 40 6.4
56gb|AF315943.1|AF315943 Homo sapiens WNT6 (WNT6) gene, partial cd... 40 6.4
57ref|NM_006522.3| Homo sapiens wingless-type MMTV integration sit... 40 6.4
58ref|XM_237295.3| PREDICTED: Rattus norvegicus wingless-related M... 40 6.4
59dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
60dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
61gb|AY892163.1| Synthetic construct Homo sapiens clone FLH023678.... 40 6.4
62gb|AY889709.1| Synthetic construct Homo sapiens clone FLH023682.... 40 6.4
63dbj|AK102776.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
64gb|BC048700.1| Mus musculus wingless-related MMTV integration si... 40 6.4
65emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.4
66gb|AF043284.1|AF043284 Gossypium hirsutum expansin (GhEX1) mRNA,... 40 6.4 
>dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074I02, full
           insert sequence
          Length = 1156

 Score =  248 bits (125), Expect = 1e-62
 Identities = 242/281 (86%)
 Strand = Plus / Plus

                                                                       
Query: 187 ggcaatggcggctacgaggactggaggctgggcacggccacctacatcaaggagtcccag 246
           ||||||||||| || ||||| |||||| ||||| |||| ||||||||||||||||||| |
Sbjct: 254 ggcaatggcgggtatgaggagtggaggatgggctcggcgacctacatcaaggagtccctg 313

                                                                       
Query: 247 ggccacccgctcaacgacggtggcggcgcttgcgggtacggggacctggacatattcagg 306
           || |||||||| || || ||||| || || || |||||||| ||||||||||| ||||||
Sbjct: 314 gggcacccgctgaatgatggtggtggagcctgtgggtacggcgacctggacatcttcagg 373

                                                                       
Query: 307 tacgggaggtacacggccgggctgagcggcgcgctgttcgggcggggcagcgcctgcggc 366
           |||||||||||||| |||||  |||||||||||||||||||||| |||||||| ||||||
Sbjct: 374 tacgggaggtacaccgccggcgtgagcggcgcgctgttcgggcgcggcagcgcgtgcggc 433

                                                                       
Query: 367 ggctgctacgagctccggtgcgtgaacaacatcctctattgcctgcggggcagccccacc 426
           |||||||||||| | |||||||||||| || | || |  ||||| || |||||||| || 
Sbjct: 434 ggctgctacgaggtgcggtgcgtgaaccacgtgctgtggtgcctccgcggcagcccgacg 493

                                                    
Query: 427 gtcgtcgtgacggcgaccgacttctgcgcccccaacttcgg 467
           || || |||||||| |||||||||||||| |||||| ||||
Sbjct: 494 gtggtggtgacggccaccgacttctgcgcgcccaacctcgg 534
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>gb|AF394552.1| Oryza sativa alpha-expansin OsEXPA16 (EXPA16) gene, partial cds
          Length = 3267

 Score =  182 bits (92), Expect = 7e-43
 Identities = 164/188 (87%)
 Strand = Plus / Plus

                                                                       
Query: 280 gggtacggggacctggacatattcaggtacgggaggtacacggccgggctgagcggcgcg 339
           |||||||| ||||||||||| |||||||||||||||||||| |||||  |||||||||||
Sbjct: 193 gggtacggcgacctggacatcttcaggtacgggaggtacaccgccggcgtgagcggcgcg 252

                                                                       
Query: 340 ctgttcgggcggggcagcgcctgcggcggctgctacgagctccggtgcgtgaacaacatc 399
           ||||||||||| |||||||| |||||||||||||||||| | |||||||||||| || | 
Sbjct: 253 ctgttcgggcgcggcagcgcgtgcggcggctgctacgaggtgcggtgcgtgaaccacgtg 312

                                                                       
Query: 400 ctctattgcctgcggggcagccccaccgtcgtcgtgacggcgaccgacttctgcgccccc 459
           || |  ||||| || |||||||| || || || |||||||| |||||||||||||| |||
Sbjct: 313 ctgtggtgcctccgcggcagcccgacggtggtggtgacggccaccgacttctgcgcgccc 372

                   
Query: 460 aacttcgg 467
           ||| ||||
Sbjct: 373 aacctcgg 380
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  182 bits (92), Expect = 7e-43
 Identities = 164/188 (87%)
 Strand = Plus / Plus

                                                                            
Query: 280      gggtacggggacctggacatattcaggtacgggaggtacacggccgggctgagcggcgcg 339
                |||||||| ||||||||||| |||||||||||||||||||| |||||  |||||||||||
Sbjct: 24600227 gggtacggcgacctggacatcttcaggtacgggaggtacaccgccggcgtgagcggcgcg 24600286

                                                                            
Query: 340      ctgttcgggcggggcagcgcctgcggcggctgctacgagctccggtgcgtgaacaacatc 399
                ||||||||||| |||||||| |||||||||||||||||| | |||||||||||| || | 
Sbjct: 24600287 ctgttcgggcgcggcagcgcgtgcggcggctgctacgaggtgcggtgcgtgaaccacgtg 24600346

                                                                            
Query: 400      ctctattgcctgcggggcagccccaccgtcgtcgtgacggcgaccgacttctgcgccccc 459
                || |  ||||| || |||||||| || || || |||||||| |||||||||||||| |||
Sbjct: 24600347 ctgtggtgcctccgcggcagcccgacggtggtggtgacggccaccgacttctgcgcgccc 24600406

                        
Query: 460      aacttcgg 467
                ||| ||||
Sbjct: 24600407 aacctcgg 24600414



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                            
Query: 187      ggcaatggcggctacgaggactggaggctgggcacggccacctacatcaaggagtcccag 246
                ||||||||||| || ||||| |||||| ||||| |||| ||||||||||||||||||| |
Sbjct: 24598895 ggcaatggcgggtatgaggagtggaggatgggctcggcgacctacatcaaggagtccctg 24598954

                           
Query: 247      ggccacccgct 257
                || ||||||||
Sbjct: 24598955 gggcacccgct 24598965
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>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0040H10
          Length = 173301

 Score =  182 bits (92), Expect = 7e-43
 Identities = 164/188 (87%)
 Strand = Plus / Plus

                                                                         
Query: 280   gggtacggggacctggacatattcaggtacgggaggtacacggccgggctgagcggcgcg 339
             |||||||| ||||||||||| |||||||||||||||||||| |||||  |||||||||||
Sbjct: 83420 gggtacggcgacctggacatcttcaggtacgggaggtacaccgccggcgtgagcggcgcg 83479

                                                                         
Query: 340   ctgttcgggcggggcagcgcctgcggcggctgctacgagctccggtgcgtgaacaacatc 399
             ||||||||||| |||||||| |||||||||||||||||| | |||||||||||| || | 
Sbjct: 83480 ctgttcgggcgcggcagcgcgtgcggcggctgctacgaggtgcggtgcgtgaaccacgtg 83539

                                                                         
Query: 400   ctctattgcctgcggggcagccccaccgtcgtcgtgacggcgaccgacttctgcgccccc 459
             || |  ||||| || |||||||| || || || |||||||| |||||||||||||| |||
Sbjct: 83540 ctgtggtgcctccgcggcagcccgacggtggtggtgacggccaccgacttctgcgcgccc 83599

                     
Query: 460   aacttcgg 467
             ||| ||||
Sbjct: 83600 aacctcgg 83607



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                         
Query: 187   ggcaatggcggctacgaggactggaggctgggcacggccacctacatcaaggagtcccag 246
             ||||||||||| || ||||| |||||| ||||| |||| ||||||||||||||||||| |
Sbjct: 82088 ggcaatggcgggtatgaggagtggaggatgggctcggcgacctacatcaaggagtccctg 82147

                        
Query: 247   ggccacccgct 257
             || ||||||||
Sbjct: 82148 gggcacccgct 82158
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>ref|XM_473658.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 774

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 428 tcgtcgtgacggcgaccgacttctgcgcccccaacttcgg 467
           ||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct: 305 tcgtcgtcacggccaccaacttctgcgccccgaacttcgg 344
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>gb|AF247165.1| Oryza sativa alpha-expansin OsEXPA10 mRNA, complete cds
          Length = 1119

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 428 tcgtcgtgacggcgaccgacttctgcgcccccaacttcgg 467
           ||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct: 320 tcgtcgtcacggccaccaacttctgcgccccgaacttcgg 359
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>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01,
              complete sequence
          Length = 186325

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 428    tcgtcgtgacggcgaccgacttctgcgcccccaacttcgg 467
              ||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct: 132050 tcgtcgtcacggccaccaacttctgcgccccgaacttcgg 132089
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 428      tcgtcgtgacggcgaccgacttctgcgcccccaacttcgg 467
                ||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct: 29459034 tcgtcgtcacggccaccaacttctgcgccccgaacttcgg 29459073



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 422      ccaccgtcgtcgtgacggcg 441
                ||||||||||||||||||||
Sbjct: 30903644 ccaccgtcgtcgtgacggcg 30903625
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>dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067I11, full
           insert sequence
          Length = 3105

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 428 tcgtcgtgacggcgaccgacttctgcgcccccaacttcgg 467
           ||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct: 427 tcgtcgtcacggccaccaacttctgcgccccgaacttcgg 466
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>dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C11, full
           insert sequence
          Length = 1162

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 428 tcgtcgtgacggcgaccgacttctgcgcccccaacttcgg 467
           ||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct: 426 tcgtcgtcacggccaccaacttctgcgccccgaacttcgg 465
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>gb|AY111047.1| Zea mays CL11344_1 mRNA sequence
          Length = 927

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 430 gtcgtgacggcgaccgacttctgcgcccccaacttcggcc 469
           ||||| ||||||||| ||||||||||||| |||| |||||
Sbjct: 785 gtcgtcacggcgaccaacttctgcgccccgaactacggcc 746
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>ref|XM_990617.1| PREDICTED: Mus musculus hypothetical protein LOC672018 (LOC672018),
           mRNA
          Length = 360

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 167 gcggcggcgtcaggctggcgggc 189
           |||||||||||||||||||||||
Sbjct: 265 gcggcggcgtcaggctggcgggc 243
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>ref|XM_977096.1| PREDICTED: Mus musculus hypothetical protein LOC665459 (LOC665459),
           mRNA
          Length = 360

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 167 gcggcggcgtcaggctggcgggc 189
           |||||||||||||||||||||||
Sbjct: 265 gcggcggcgtcaggctggcgggc 243
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>gb|AY105640.1| Zea mays PCO063012 mRNA sequence
          Length = 1044

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 428 tcgtcgtgacggcgaccgacttctgcgcccccaacttcggcct 470
           ||||||| ||||| ||| ||||||||||||| |||| ||||||
Sbjct: 454 tcgtcgtcacggcaaccaacttctgcgccccaaactacggcct 496
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>emb|AL845506.6| Mouse DNA sequence from clone RP23-401M24 on chromosome 2, complete
             sequence
          Length = 92280

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 167   gcggcggcgtcaggctggcgggc 189
             |||||||||||||||||||||||
Sbjct: 74281 gcggcggcgtcaggctggcgggc 74259
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 339     gctgttcgggcggggcagcgcc 360
               ||||||||||||||||||||||
Sbjct: 4280934 gctgttcgggcggggcagcgcc 4280955
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>gb|AY543533.1| Triticum aestivum expansin EXPA7 mRNA, complete cds
          Length = 1031

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 337 gcgctgttcgggcggggcagcgcctgcggcggctgctacgag 378
           |||||||||| ||| |||  ||||||||| ||||||||||||
Sbjct: 279 gcgctgttcgagcgcggcgccgcctgcgggggctgctacgag 320
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>gb|AF247163.1| Oryza sativa alpha-expansin OsEXPA6 mRNA, complete cds
          Length = 1197

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 360 ctgcggcggctgctacgagctccggtgcg 388
           |||||||  ||||||||||||||||||||
Sbjct: 243 ctgcggctcctgctacgagctccggtgcg 271
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 360      ctgcggcggctgctacgagctccggtgcg 388
                |||||||  ||||||||||||||||||||
Sbjct: 12444706 ctgcggctcctgctacgagctccggtgcg 12444678
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>gb|AC092788.3| Homo sapiens BAC clone RP11-333G13 from 7, complete sequence
          Length = 42544

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ggaggctgggcacggccacct 229
             |||||||||||||||||||||
Sbjct: 10838 ggaggctgggcacggccacct 10858
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>gb|DQ328857.1| Pseudomonas citronellolis probable short-chain dehydrogenase (atuG)
           gene, complete cds
          Length = 822

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 159 caggttcagcggcggcgtcaggctg 183
           ||||||||||||||||| |||||||
Sbjct: 453 caggttcagcggcggcgacaggctg 429
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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 360    ctgcggcggctgctacgagctccggtgcg 388
              |||||||  ||||||||||||||||||||
Sbjct: 102388 ctgcggctcctgctacgagctccggtgcg 102360
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>gb|AE012000.1| Xanthomonas axonopodis pv. citri str. 306,  section 378 of 469 of the
            complete genome
          Length = 10855

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 255  gctcaacgacggtggcggcgc 275
            |||||||||||||||||||||
Sbjct: 5858 gctcaacgacggtggcggcgc 5838
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>gb|AC147281.4| Pan troglodytes BAC clone RP43-98P12 from chromosome 7, complete sequence
          Length = 185963

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    ggaggctgggcacggccacct 229
              |||||||||||||||||||||
Sbjct: 118171 ggaggctgggcacggccacct 118151
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 360      ctgcggcggctgctacgagctccggtgcg 388
                |||||||  ||||||||||||||||||||
Sbjct: 12441469 ctgcggctcctgctacgagctccggtgcg 12441441
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>dbj|AB196980.1| Sagittaria pygmaea SpEXPA2 mRNA for expansin, complete cds
          Length = 1026

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 361 tgcggcggctgctacgagctccggtgcgtgaac 393
           |||||||| ||||||||| || |||||||||||
Sbjct: 346 tgcggcggatgctacgagatcaggtgcgtgaac 378
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>dbj|AK107698.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C08, full
           insert sequence
          Length = 1044

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 360 ctgcggcggctgctacgagctccggtgcg 388
           |||||||  ||||||||||||||||||||
Sbjct: 244 ctgcggctcctgctacgagctccggtgcg 272
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 352     ggcagcgcctgcggcggctgc 372
               |||||||||||||||||||||
Sbjct: 3307701 ggcagcgcctgcggcggctgc 3307681
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>gb|AY543528.1| Triticum aestivum expansin EXPA2 mRNA, complete cds
          Length = 777

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 359 cctgcggcggctgctacgagctccggtgc 387
           |||||||||||||||||||| ||| ||||
Sbjct: 242 cctgcggcggctgctacgagatccagtgc 270
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>ref|NM_190673.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 193 ggcggctacgaggactggag 212
           ||||||||||||||||||||
Sbjct: 107 ggcggctacgaggactggag 126
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>ref|XM_516098.1| PREDICTED: Pan troglodytes similar to Wnt-10a protein precursor
            (LOC459952), mRNA
          Length = 3822

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  ccgacttctgcgcccccaac 462
            ||||||||||||||||||||
Sbjct: 1607 ccgacttctgcgcccccaac 1626
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>ref|XM_473839.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 422 ccaccgtcgtcgtgacggcg 441
           ||||||||||||||||||||
Sbjct: 67  ccaccgtcgtcgtgacggcg 48
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>gb|BC004329.1| Homo sapiens wingless-type MMTV integration site family, member 6,
           mRNA (cDNA clone MGC:10938 IMAGE:3630498), complete cds
          Length = 1506

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ccgacttctgcgcccccaac 462
           ||||||||||||||||||||
Sbjct: 875 ccgacttctgcgcccccaac 894
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>ref|XM_581305.2| PREDICTED: Bos taurus similar to wingless-related MMTV integration
           site 6 (LOC505075), mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ccgacttctgcgcccccaac 462
           ||||||||||||||||||||
Sbjct: 818 ccgacttctgcgcccccaac 837
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>ref|NM_009526.2| Mus musculus wingless-related MMTV integration site 6 (Wnt6), mRNA
          Length = 1669

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  ccgacttctgcgcccccaac 462
            ||||||||||||||||||||
Sbjct: 1057 ccgacttctgcgcccccaac 1076
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>gb|AF512540.1| Gossypium hirsutum alpha-expansin precursor (Exp2) gene, complete
           cds
          Length = 1659

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 360 ctgcggcggctgctacgagctccggtgc 387
           |||||| | |||||||||||||||||||
Sbjct: 365 ctgcggtgcctgctacgagctccggtgc 392
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 159     caggttcagcggcggcgtca 178
               ||||||||||||||||||||
Sbjct: 5097423 caggttcagcggcggcgtca 5097404
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>gb|BT009885.1| Synthetic construct Homo sapiens wingless-type MMTV integration
           site family, member 6 mRNA, partial cds
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ccgacttctgcgcccccaac 462
           ||||||||||||||||||||
Sbjct: 872 ccgacttctgcgcccccaac 891
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    ccaccgtcgtcgtgacggcg 441
              ||||||||||||||||||||
Sbjct: 171165 ccaccgtcgtcgtgacggcg 171146
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
            complete sequence
          Length = 150551

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 422  ccaccgtcgtcgtgacggcg 441
            ||||||||||||||||||||
Sbjct: 1012 ccaccgtcgtcgtgacggcg 993
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>gb|BT007456.1| Homo sapiens wingless-type MMTV integration site family, member 6
           mRNA, complete cds
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ccgacttctgcgcccccaac 462
           ||||||||||||||||||||
Sbjct: 872 ccgacttctgcgcccccaac 891
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>gb|DQ100329.1| Eucalyptus globulus putative alpha-expansin (EXPA2) mRNA, partial
           cds
          Length = 1168

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 370 tgctacgagctccggtgcgtgaac 393
           ||||||||| ||||||||||||||
Sbjct: 106 tgctacgagatccggtgcgtgaac 129
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>gb|AE005980.1| Caulobacter crescentus CB15 section 306 of 359 of the complete genome
          Length = 12632

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 153   cgaggtcaggttcagcggcggcgtcagg 180
             ||||||||||| ||||||||| ||||||
Sbjct: 10418 cgaggtcaggtgcagcggcggggtcagg 10445
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>gb|AE005686.1| Caulobacter crescentus CB15 section 12 of 359 of the complete genome
          Length = 11992

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  gcagcgcctgcggcggctgc 372
            ||||||||||||||||||||
Sbjct: 8223 gcagcgcctgcggcggctgc 8204
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>dbj|AK075522.1| Homo sapiens cDNA PSEC0220 fis, clone HEMBA1005301, highly similar
           to Wnt-6 protein precursor
          Length = 1584

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ccgacttctgcgcccccaac 462
           ||||||||||||||||||||
Sbjct: 971 ccgacttctgcgcccccaac 990
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>gb|AY189969.1| Gossypium hirsutum expansin mRNA, complete cds
          Length = 1250

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 360 ctgcggcggctgctacgagctccggtgc 387
           |||||| | |||||||||||||||||||
Sbjct: 374 ctgcggtgcctgctacgagctccggtgc 401
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>gb|DQ204495.1| Gossypium hirsutum alpha-expansin 1 mRNA, complete cds
          Length = 1114

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 360 ctgcggcggctgctacgagctccggtgc 387
           |||||| | |||||||||||||||||||
Sbjct: 285 ctgcggtgcctgctacgagctccggtgc 312
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>emb|AL512584.13| Mouse DNA sequence from clone RP23-232D1 on chromosome 2, complete
             sequence
          Length = 141386

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tgatgggctctctgctcctg 120
             ||||||||||||||||||||
Sbjct: 51603 tgatgggctctctgctcctg 51622
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>gb|AF288082.1|AF288082 Photorhabdus luminescens strain NC19; ATCC29304 NgrD (ngrD) gene,
            partial cds; YcaA (ycaA), YcaB (ycaB), YcaC (ycaC), YcaD
            (ycaD), and YcbA (ycbA) genes, complete cds; and YccA
            gene, partial cds
          Length = 7356

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 176  tcaggctggcgggcaatggcggct 199
            |||||||||| |||||||||||||
Sbjct: 7319 tcaggctggctggcaatggcggct 7296
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>gb|AC011446.6|AC011446 Homo sapiens chromosome 19 clone CTC-250I14, complete sequence
          Length = 115932

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   caggctggcgggcaatggcg 196
             ||||||||||||||||||||
Sbjct: 56383 caggctggcgggcaatggcg 56364
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 193      ggcggctacgaggactggag 212
                ||||||||||||||||||||
Sbjct: 37036364 ggcggctacgaggactggag 37036345
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>gb|DQ023525.1| Gossypium hirsutum cultivar CIM707 expansin mRNA, complete cds
          Length = 777

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 360 ctgcggcggctgctacgagctccggtgc 387
           |||||| | |||||||||||||||||||
Sbjct: 252 ctgcggtgcctgctacgagctccggtgc 279
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>dbj|AB196979.1| Sagittaria pygmaea SpEXPA1 mRNA for expansin, complete cds
          Length = 1355

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 ggcggcgcttgcgggtacgg 287
           ||||||||||||||||||||
Sbjct: 315 ggcggcgcttgcgggtacgg 334
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>gb|AC073128.5| Homo sapiens BAC clone RP11-647O5 from 2, complete sequence
          Length = 55590

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  ccgacttctgcgcccccaac 462
            ||||||||||||||||||||
Sbjct: 6847 ccgacttctgcgcccccaac 6866
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>gb|AC068291.6| Homo sapiens BAC clone RP11-670I21 from 2, complete sequence
          Length = 113955

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   ggactggaggctgggcacgg 223
             ||||||||||||||||||||
Sbjct: 36583 ggactggaggctgggcacgg 36602
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>gb|AF315943.1|AF315943 Homo sapiens WNT6 (WNT6) gene, partial cds; and WNT10A (WNT10A) gene,
            complete cds, complete sequence
          Length = 36654

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  ccgacttctgcgcccccaac 462
            ||||||||||||||||||||
Sbjct: 7292 ccgacttctgcgcccccaac 7311
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>ref|NM_006522.3| Homo sapiens wingless-type MMTV integration site family, member 6
            (WNT6), mRNA
          Length = 1700

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  ccgacttctgcgcccccaac 462
            ||||||||||||||||||||
Sbjct: 1087 ccgacttctgcgcccccaac 1106
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>ref|XM_237295.3| PREDICTED: Rattus norvegicus wingless-related MMTV integration site
           6 (predicted) (Wnt6_predicted), mRNA
          Length = 1092

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ccgacttctgcgcccccaac 462
           ||||||||||||||||||||
Sbjct: 866 ccgacttctgcgcccccaac 885
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>dbj|AP003415.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1402_H07
          Length = 140620

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    ggcggctacgaggactggag 212
              ||||||||||||||||||||
Sbjct: 126668 ggcggctacgaggactggag 126649
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>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0683F02
          Length = 153388

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ggcggctacgaggactggag 212
             ||||||||||||||||||||
Sbjct: 37505 ggcggctacgaggactggag 37486
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>gb|AY892163.1| Synthetic construct Homo sapiens clone FLH023678.01L wingless-type
           MMTV integration site family member 6 (WNT6) mRNA,
           partial cds
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ccgacttctgcgcccccaac 462
           ||||||||||||||||||||
Sbjct: 872 ccgacttctgcgcccccaac 891
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>gb|AY889709.1| Synthetic construct Homo sapiens clone FLH023682.01X wingless-type
           MMTV integration site family member 6 (WNT6) mRNA,
           complete cds
          Length = 1098

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 ccgacttctgcgcccccaac 462
           ||||||||||||||||||||
Sbjct: 872 ccgacttctgcgcccccaac 891
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>dbj|AK102776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107I02, full
           insert sequence
          Length = 2153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 193 ggcggctacgaggactggag 212
           ||||||||||||||||||||
Sbjct: 127 ggcggctacgaggactggag 146
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>gb|BC048700.1| Mus musculus wingless-related MMTV integration site 6, mRNA (cDNA
            clone MGC:59372 IMAGE:6511061), complete cds
          Length = 1669

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  ccgacttctgcgcccccaac 462
            ||||||||||||||||||||
Sbjct: 1057 ccgacttctgcgcccccaac 1076
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   ccaccgtcgtcgtgacggcg 441
             ||||||||||||||||||||
Sbjct: 80638 ccaccgtcgtcgtgacggcg 80619
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>gb|AF043284.1|AF043284 Gossypium hirsutum expansin (GhEX1) mRNA, complete cds
          Length = 1102

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 360 ctgcggcggctgctacgagctccggtgc 387
           |||||| | |||||||||||||||||||
Sbjct: 271 ctgcggtgcctgctacgagctccggtgc 298


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,654,267
Number of Sequences: 3902068
Number of extensions: 2654267
Number of successful extensions: 59275
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58703
Number of HSP's gapped (non-prelim): 568
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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