>Y114_CHLMU (Q9PLI5) Hypothetical protein TC0114|
          Length = 122

 Score =  140 bits (352), Expect = 1e-33
 Identities = 75/103 (72%), Positives = 78/103 (75%)
 Frame = -1

Query: 310 MLSAVIYSEHSYPAMPLA*QPEHQRFVHSGPLVLGAAPLKSQTSTADRDRTVSRRSKPSS 131
           MLS +I SE SY AM LA QP H  FVHSGPLVLG APLK    T DRD+TVSRR +PSS
Sbjct: 1   MLSMLILSELSYSAMLLAKQPTHHWFVHSGPLVLGTAPLKYPAPTKDRDQTVSRRFEPSS 60

Query: 130 RTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRRYELLGGISLLS 2
           RT L GEQP PWD LQPQD MSRHRGAK  RRYELL  ISLLS
Sbjct: 61  RTALIGEQPNPWDLLQPQDAMSRHRGAKPPRRYELLVAISLLS 103

>Y4RJ_RHISN (P55643) Putative transposase y4rJ|
          Length = 396

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -1

Query: 208 GAAPLKSQTSTADRDRTVSRRSKPSSRTTLNGEQPYPWDRLQPQDVMS---RHRGAKHRR 38
           G AP   Q+ + D D+ VS+   P  RTTL  +  + W R QP   +S   + RG ++  
Sbjct: 301 GLAPTPWQSGSVDHDQGVSKAGNPRLRTTLI-QGAWLWLRHQPHSALSLWFKQRGKQNDG 359

Query: 37  R 35
           R
Sbjct: 360 R 360

>RL6_MYCPN (Q50303) 50S ribosomal protein L6|
          Length = 184

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 25  RVHIDGGVWHLDVGSSHPGAEAGPKGMAVR 114
           R +++G   +L +G SHP  E  PKG+ V+
Sbjct: 98  RANVEGETLNLQLGYSHPIKEKIPKGLTVK 127

>TNF13_MOUSE (Q9D777) Tumor necrosis factor ligand superfamily member 13|
           precursor (A proliferation-inducing ligand) (APRIL)
           (CD256 antigen)
          Length = 241

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 223 GPLVLGAAPLKSQTSTADRDRTVSRRSKPSSRTTLNGEQPYPWDRLQPQDVMSRHR-GAK 47
           G +    A L  QT      R VSR  +    +   GE+P+     Q  DV+   + GAK
Sbjct: 31  GAVTCAVALLIQQTELQSLRREVSRLQRSGGPSQKQGERPWQSLWEQSPDVLEAWKDGAK 90

Query: 46  HRRRYELL 23
            RRR  +L
Sbjct: 91  SRRRRAVL 98

>PSBA_PORPU (P51212) Photosystem Q(B) protein (32 kDa thylakoid membrane|
           protein) (Photosystem II protein D1)
          Length = 360

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 41  AVFGTSMSAHHILGLKPVPRVWLFAI*SGTRA 136
           A F  S S H  LGL PV  +WL A+   T A
Sbjct: 263 ASFNNSRSLHFFLGLWPVVGIWLTALSVSTMA 294

>TTGF_PSEPU (Q9KWV3) Toluene efflux pump outer membrane protein ttgF precursor|
          Length = 480

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -2

Query: 354 KVPVRSHLEASFPLRCFQRLSIPNIATRQCHWRDNRNTRGSSTPVLSY*EQPLSNLKRPR 175
           +  ++ +L A+   R  Q   I ++A     WR ++     +   L+  E  L+ +K  R
Sbjct: 156 RAALQEYLAAAETQRSMQIALIADVAIAYLSWRSDQAQLDLARSTLASYENSLNLIKSSR 215

Query: 174 QIGTELSHDV 145
           ++GT  + DV
Sbjct: 216 EVGTASALDV 225

>SEPC_PSEPU (Q849R1) Probable efflux pump outer membrane protein sepC precursor|
          Length = 480

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -2

Query: 354 KVPVRSHLEASFPLRCFQRLSIPNIATRQCHWRDNRNTRGSSTPVLSY*EQPLSNLKRPR 175
           +  ++ +L A+   R  Q   I ++A     WR ++     +   L+  E  L+ +K  R
Sbjct: 156 RAALQEYLAAAETQRSMQIALIADVAIAYLSWRSDQAQLDLARSTLASYENSLNLIKSSR 215

Query: 174 QIGTELSHDV 145
           ++GT  + DV
Sbjct: 216 EVGTASALDV 225

>AANT_HDVD3 (P29996) Large delta antigen (p27) (HDAg-L) [Contains: Small delta|
           antigen (p24) (HDAg-S)]
          Length = 214

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
 Frame = -1

Query: 226 SGPLVLGAAPLKSQTSTADRDRTV-SRRSKPSSRTTLNGE-------QPYPWDRLQPQD 74
           +GP V G  PL+  T  A     V S +  P S  T  GE       Q +PWD L P D
Sbjct: 145 AGPQVGGVNPLEGGTRGAPGGGFVPSMQGVPESPFTRTGEGLDIRGSQGFPWDILFPAD 203

>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn|
           syndrome candidate 2 protein)
          Length = 549

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 202 APLKSQTSTADRDRTVSRRSKPSSRTTLNGEQPYPWDRLQPQDVMSRHRGAKHRRR 35
           AP +S T+ +    T +R   P SRT L  E+      +   D++   R AK RR+
Sbjct: 242 APFRSPTAPSVFSPTGNRTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 297

>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            [Contains: Notch 1 extracellular truncation; Notch 1
            intracellular domain]
          Length = 2531

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 289  SEHSYPAMPLA*QPEHQRFVHSGPLVLGAAPLKSQTSTADRDRTVS 152
            S+HSY + P+   P HQ  V   P +  +     Q S++ R   +S
Sbjct: 2461 SQHSYSSSPVDNTPSHQLQVPEHPFLTPSPESPDQWSSSSRHSNIS 2506

>ODO1_BACSU (P23129) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)|
           (Alpha-ketoglutarate dehydrogenase)
          Length = 941

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 286 EHSYPAMPLA*QPEHQRFVHSGPLVLGAAPLKSQTST 176
           + + PA+PLA  P H  F++  P+V G+     +T T
Sbjct: 308 KQNQPALPLANNPSHLEFIN--PIVEGSTRAAQETRT 342

>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid X|
            receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query: 184  TSTADRDRTVSRRSKPS-SRTTLNGEQPYPWDRLQPQDVMSRHRGAK 47
            +ST  R +T SR S  S S+T L+   P P  R+ P++++ + RG++
Sbjct: 2103 SSTPVRTKTSSRYSPESQSQTVLH---PRPGPRVSPENLVDKSRGSR 2146

>PSBA_CYACA (O19895) Photosystem Q(B) protein (32 kDa thylakoid membrane|
           protein) (Photosystem II protein D1)
          Length = 360

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 41  AVFGTSMSAHHILGLKPVPRVWLFAI*SGTRA 136
           A F  S + H  LGL PV  +WL +I   T A
Sbjct: 263 ASFNNSRALHFFLGLWPVVGIWLTSIGISTMA 294

>CARA_DESVM (Q8KZA0) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 376

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = -1

Query: 184 TSTADRDRTVSR-RSKPSSR-----TTLNGEQPYPWDRLQPQDVMSRHRGA 50
           T T DRD  V R R+ P+       T +    PY WD  +PQ V     GA
Sbjct: 132 TETDDRDELVRRARALPTMEGQNLVTRVAPATPYRWDGTRPQPVQLAADGA 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,960,027
Number of Sequences: 219361
Number of extensions: 1204016
Number of successful extensions: 3206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3205
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)