ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59d03 |
|---|---|
| Clone Library Name | barley_pub |
>DNAA_STRAW (Q82FD8) Chromosomal replication initiator protein dnaA| Length = 653 Score = 37.4 bits (85), Expect = 0.015 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Frame = +1 Query: 76 REHDLRRGAEDRQGGGDG---PREQGDVPGPRRPREHHLQHPAPG--PRLRCNHDGWRRR 240 R D R+G DR GG G P +GD RP Q P PG PR + GW+++ Sbjct: 137 RADDHRQGHNDRHQGGPGDQLPPSRGDQLPTARPAYPDYQRPEPGAWPRPSQDDYGWQQQ 196 Query: 241 QPGQPD 258 + G P+ Sbjct: 197 RLGFPE 202
>LEU1_PYRAE (Q8ZW35) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 364 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/51 (29%), Positives = 27/51 (52%) Frame = +2 Query: 17 GNHSTVWCLPTWRSRPIMELVNTIFDVALKIAKAVETARENKAMCLDLADR 169 G HS +W L P +LVN + D K+ AV+ + ++A+ ++ +R Sbjct: 305 GRHSVIWALKNLGVEPSEDLVNYVLDAVKKL--AVKKVKVDEAVLREIVNR 353
>BPHC_BACPJ (Q8GR45) Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase| (EC 1.13.11.39) (Mn(II)-dependent 23OHBP oxygenase) (Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase) Length = 315 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +1 Query: 106 DRQGGGDGPREQGDVPGPRRPREHHLQHPAPGPRLRCNHDGWRRRQP 246 DRQG R GD EHH PG R R +H WR ++P Sbjct: 35 DRQGDTIFLRAWGDW-------EHHTLSLTPGNRARVDHIAWRTKRP 74
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 29.6 bits (65), Expect = 3.2 Identities = 25/85 (29%), Positives = 30/85 (35%) Frame = +1 Query: 1 WPGRAGES*HSLVPSYLAIEADHGAREHDLRRGAEDRQGGGDGPREQGDVPGPRRPREHH 180 +PGR G + P + + GAR G GPR Q GPR R Sbjct: 845 YPGRQGPKGSTGFPGFPGANGEKGARG----------VAGKPGPRGQRGPTGPRGSRGAR 894 Query: 181 LQHPAPGPRLRCNHDGWRRRQPGQP 255 PGP+ DG PG P Sbjct: 895 GPTGKPGPKGTSGGDG----PPGPP 915
>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 911 Score = 29.6 bits (65), Expect = 3.2 Identities = 25/85 (29%), Positives = 30/85 (35%) Frame = +1 Query: 1 WPGRAGES*HSLVPSYLAIEADHGAREHDLRRGAEDRQGGGDGPREQGDVPGPRRPREHH 180 +PGR G + P + + GAR G GPR Q GPR R Sbjct: 612 YPGRQGPKGSTGFPGFPGANGEKGARG----------VAGKPGPRGQRGPTGPRGSRGAR 661 Query: 181 LQHPAPGPRLRCNHDGWRRRQPGQP 255 PGP+ DG PG P Sbjct: 662 GPTGKPGPKGTSGGDG----PPGPP 682
>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 148 VPGPRRPREHHLQHPAPGPRLRCNHDG-WRRRQP 246 +PGPR+P + P PGP RC +G W R P Sbjct: 330 MPGPRQPAP---KRPPPGPCYRCLKEGHWARDCP 360
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 29.3 bits (64), Expect = 4.1 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 148 VPGPRRPREHHLQHPAPGPRLRCNHDG-WRRRQP 246 +PGPR+P + P PGP RC +G W R P Sbjct: 330 MPGPRQPAP---KRPPPGPCYRCLKEGHWARDCP 360
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +1 Query: 70 GAREHDLRRGAEDRQGGGDGPREQGDVPGP 159 G RE RRGA R G PR + PGP Sbjct: 1098 GRREESFRRGAPPRHEGRAPPRGRDGFPGP 1127
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/32 (53%), Positives = 17/32 (53%) Frame = +1 Query: 112 QGGGDGPREQGDVPGPRRPREHHLQHPAPGPR 207 QGGG GPR G GPR Q PA GPR Sbjct: 287 QGGGAGPRPGG---GPRPNPGMMPQRPAAGPR 315
>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor| Length = 1804 Score = 29.3 bits (64), Expect = 4.1 Identities = 25/85 (29%), Positives = 30/85 (35%) Frame = +1 Query: 1 WPGRAGES*HSLVPSYLAIEADHGAREHDLRRGAEDRQGGGDGPREQGDVPGPRRPREHH 180 +PGR G + P + + GAR G GPR Q GPR R Sbjct: 843 YPGRQGPKGSTGFPGFPGANGEKGARGI----------AGKPGPRGQRGPTGPRGSRGAR 892 Query: 181 LQHPAPGPRLRCNHDGWRRRQPGQP 255 PGP+ DG PG P Sbjct: 893 GPTGKPGPKGTSGGDG----PPGPP 913
>ORC1_HUMAN (Q13415) Origin recognition complex subunit 1 (Replication control| protein 1) Length = 861 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +2 Query: 92 DVALKIAKAVETARENKAMCLDLADRASTICNILRQDRDSGAIMT 226 D +A+ V + CLD+ RA+ IC +Q DS ++T Sbjct: 703 DAIQLVARKVAALSGDARRCLDICRRATEICEFSQQKPDSPGLVT 747
>COL8_CAEEL (P18833) Cuticle collagen 8 precursor| Length = 282 Score = 29.3 bits (64), Expect = 4.1 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Frame = +1 Query: 4 PGRAGES*HSLVPSYLAIEADHGAR------EHDLRRGAEDRQGGGDGPREQGDVPGPRR 165 PG GE S P + + GA HD+ G G GPR + GP Sbjct: 97 PGPPGEGGQSGEPGHDGDDGKPGAPGVIVAITHDIPGGCIKCPPGCPGPRGPSGLVGPAG 156 Query: 166 PREHHLQHPAPGP 204 P +H PGP Sbjct: 157 PAGDQGRHGPPGP 169 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 8/65 (12%) Frame = +1 Query: 91 RRGAEDRQGGGDGPREQGDV--------PGPRRPREHHLQHPAPGPRLRCNHDGWRRRQP 246 R G GG GP EQGD PGP PR PG R G R P Sbjct: 163 RHGPPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGEPGTEYRPGQAGRAGPPG-PRGPP 221 Query: 247 GQPDN 261 G N Sbjct: 222 GPEGN 226
>FRS3_RAT (Q52RG8) Fibroblast growth factor receptor substrate 3 (FGFR| substrate 3) (Suc1-associated neurotrophic factor target 2) (SNT-2) (FGFR signalling adaptor SNT2) Length = 491 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 121 GDGPREQGDVPGPRRPREHHLQHPAPG 201 G+GPR PRRP L+HP+PG Sbjct: 153 GEGPRFSS---APRRPSTSSLRHPSPG 176
>FRS3_MOUSE (Q91WJ0) Fibroblast growth factor receptor substrate 3 (FGFR| substrate 3) (FRS2-beta) Length = 491 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 121 GDGPREQGDVPGPRRPREHHLQHPAPG 201 G+GPR PRRP L+HP+PG Sbjct: 153 GEGPRFSS---APRRPSTSSLRHPSPG 176
>SPT6H_DROME (Q9W420) Transcription elongation factor SPT6| Length = 1831 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/59 (30%), Positives = 22/59 (37%) Frame = +1 Query: 76 REHDLRRGAEDRQGGGDGPREQGDVPGPRRPREHHLQHPAPGPRLRCNHDGWRRRQPGQ 252 R HD+ G GGG G P HH Q + +D W RR+P Q Sbjct: 1685 RYHDMGGGGGGGVGGGGGSNAYSMQP-------HHQQRAKENLDWQLANDAWARRRPQQ 1736
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = +1 Query: 55 IEADHGAREHDLRRGAEDRQGGGDGPREQGDVPGPRRPREHHLQHPAPGPRLRCNHDGWR 234 + ++ ++ D R D + GG PR RRP + + P+PG R + D R Sbjct: 157 VSVEYALKDDDER----DDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGR 212 Query: 235 RRQP 246 R P Sbjct: 213 ARSP 216
>ANT3_CHICK (Q03352) Antithrombin-III precursor (ATIII) (Fragment)| Length = 105 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = +1 Query: 91 RRGAEDRQGGGDG---PREQGDVPGPRRP--REHHLQHPAPGPR 207 RRGA +G G P G PGP R R LQ P P PR Sbjct: 51 RRGAGAGEGQDPGVHKPPASGSCPGPTRAFGRRSFLQAPGPTPR 94
>SSB_VIBCH (Q9KUW2) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 177 Score = 28.5 bits (62), Expect = 7.1 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Frame = +1 Query: 1 WPGRAGES*HS---LVPSYLAIEADHGAREHDLRRGAEDRQGGGDGPREQGDVPGPRRPR 171 W ++G+ +S +V Y I G R ++G QGG + P +QG P++P Sbjct: 89 WQDQSGQDRYSTEVVVQGYNGIMQMLGGRA---QQGGMPAQGGMNVPAQQGSWGQPQQPA 145 Query: 172 EHH--LQHPAP 198 + H +Q AP Sbjct: 146 KQHQPMQQSAP 156
>SPT6H_CAEBR (Q93148) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein| 5) Length = 1521 Score = 28.5 bits (62), Expect = 7.1 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 8/50 (16%) Frame = +1 Query: 55 IEADHGAREHDLRRGAEDRQGGG---DGPREQGDV-----PGPRRPREHH 180 ++++ G+ + D RRG R GGG D R + D PRR R+ H Sbjct: 138 LQSERGSDDGDKRRGHGGRGGGGYDSDSDRSEDDFIEDDGDAPRRHRKRH 187
>SAE2_YEAST (P46946) Protein SAE2| Length = 345 Score = 28.5 bits (62), Expect = 7.1 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Frame = +2 Query: 71 ELVNTIFDVALKIAKAVETARENKAMCLDLADRASTICNILRQDRDS--GAIMTAGGGGS 244 EL+N +DV IAK V+ A +N+ C+ L + S + IL ++++ + T+ G G Sbjct: 24 ELLNVQYDVTTLIAKRVQ-ALQNRNKCV-LEEPNSKLAEILCHEKNAPQQSSQTSAGPGE 81 Query: 245 QASQ 256 Q S+ Sbjct: 82 QDSE 85
>HEM1_CYAPA (P48077) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 432 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +2 Query: 74 LVNTIFDVALKIAKAVETARENKAMCLDLADRASTICNILRQDRDSGAIMTAGGGGSQAS 253 ++N IF A+ K V T + + ++ A + I +QD + A +T G G + Sbjct: 137 VLNNIFKQAISAGKRVRTETQISTGAVSISSAAVELAQIKKQDLRT-ANITILGAGKMSR 195 Query: 254 QITRHTLER 280 + +H L + Sbjct: 196 LLVQHLLSK 204
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1419 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = +1 Query: 118 GGDGPREQGDVPGPRRPREHHLQHPAPGPRLRCNHDGWRRRQPGQPDN 261 G GP+ GPR R + APGPR R DG +PG P N Sbjct: 51 GPPGPQGPAGEQGPRGDRGDKGERGAPGPRGR---DG----EPGTPGN 91
>COLI_PIG (P01192) Corticotropin-lipotropin precursor (Pro-opiomelanocortin)| (POMC) [Contains: NPP; Melanotropin gamma (Gamma-MSH); Corticotropin (Adrenocorticotropic hormone) (ACTH); Melanotropin alpha (Alpha-MSH); Corticotropin-like intermediary peptide Length = 267 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +1 Query: 91 RRGAEDRQGGGDGPREQGDVPGPRR-PREHHLQH 189 R E G G GPR G PGPR+ R + ++H Sbjct: 108 REEEEVAAGEGPGPRGDGVAPGPRQDKRSYSMEH 141
>DAPE_CORGL (Q59284) Succinyl-diaminopimelate desuccinylase (EC 3.5.1.18)| (SDAP) Length = 369 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 253 AGLAASAASRHDCTGVAVLAQDVADGARAVGEVQ-AHRLVLAGRLHRLGD 107 A LA S +HD T +A ++VAD +G ++ H LA L LG+ Sbjct: 116 ATLATSTELKHDLTLIAYECEEVADHLNGLGHIRDEHPEWLAADLALLGE 165
>RA51D_HUMAN (O75771) DNA repair protein RAD51 homolog 4 (R51H3) (TRAD)| Length = 328 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = +2 Query: 107 IAKAVETARENKAMCLDLADRASTICNILRQDRDSGAIMTAGGGGSQASQITRHTLERLK 286 +A ++ ARE K + DL A + N + +DRDSG + A G TR L+ ++ Sbjct: 224 LALMMQLARELKTLARDLG-MAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIE 282
>ALMS_TAMSI (O54758) Alpha-1-antitrypsin-like protein CM55-MS precursor| Length = 413 Score = 28.1 bits (61), Expect = 9.2 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -2 Query: 234 PPAVMIAPESRSWRRMLQMVLARSARSRHIALFSRAVSTALAIFS-ATSKIVFTSSMIGL 58 P + IAP + L VLAR + + +I +++TALA+ S T T + GL Sbjct: 40 PASHRIAPHLAEFALSLYRVLARQSNTTNIFFSPVSIATALAMLSLGTKGDTHTQILEGL 99 Query: 57 D 55 D Sbjct: 100 D 100
>BORG1_HUMAN (O14613) Cdc42 effector protein 2 (Binder of Rho GTPases 1)| Length = 210 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 157 PRRPREHHLQHPAPGPRLRCNHDGWRRRQPGQPDN 261 P +P HL+ P P P+ + D WR + G P++ Sbjct: 127 PPKPPRLHLETPQPSPQEGGSVDIWRIPETGSPNS 161 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,669,640 Number of Sequences: 219361 Number of extensions: 980816 Number of successful extensions: 4494 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4482 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
