Clone Name | bart59c12 |
---|---|
Clone Library Name | barley_pub |
>gb|AF402962.1| Oryza sativa chromosome 4 clone Y5, genomic sequence Length = 23480 Score = 101 bits (51), Expect = 7e-19 Identities = 111/131 (84%) Strand = Plus / Minus Query: 3 gaggcggagacggacgcggaccgggagacggcgctgagctacggcctcacggtcgccggg 62 |||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| | Sbjct: 16839 gaggcggagaaggacgcggacggggaggcggcgctgagctacgggctcacggtcgccagc 16780 Query: 63 aaagggcaggagcaggtgccggaggagctggacagggtcctgaaggagtacacaaccttc 122 || ||||||||| ||| || ||||||||| ||| ||| |||||||||| |||||| Sbjct: 16779 aaggggcaggaggcggtcttggcccagctggacaaggtactggaggagtacaccaccttc 16720 Query: 123 tccgtcaagca 133 ||||| ||||| Sbjct: 16719 tccgtgaagca 16709
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 7e-19 Identities = 111/131 (84%) Strand = Plus / Minus Query: 3 gaggcggagacggacgcggaccgggagacggcgctgagctacggcctcacggtcgccggg 62 |||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| | Sbjct: 7472758 gaggcggagaaggacgcggacggggaggcggcgctgagctacgggctcacggtcgccagc 7472699 Query: 63 aaagggcaggagcaggtgccggaggagctggacagggtcctgaaggagtacacaaccttc 122 || ||||||||| ||| || ||||||||| ||| ||| |||||||||| |||||| Sbjct: 7472698 aaggggcaggaggcggtcttggcccagctggacaaggtactggaggagtacaccaccttc 7472639 Query: 123 tccgtcaagca 133 ||||| ||||| Sbjct: 7472638 tccgtgaagca 7472628
>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence Length = 126078 Score = 101 bits (51), Expect = 7e-19 Identities = 111/131 (84%) Strand = Plus / Minus Query: 3 gaggcggagacggacgcggaccgggagacggcgctgagctacggcctcacggtcgccggg 62 |||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| | Sbjct: 111313 gaggcggagaaggacgcggacggggaggcggcgctgagctacgggctcacggtcgccagc 111254 Query: 63 aaagggcaggagcaggtgccggaggagctggacagggtcctgaaggagtacacaaccttc 122 || ||||||||| ||| || ||||||||| ||| ||| |||||||||| |||||| Sbjct: 111253 aaggggcaggaggcggtcttggcccagctggacaaggtactggaggagtacaccaccttc 111194 Query: 123 tccgtcaagca 133 ||||| ||||| Sbjct: 111193 tccgtgaagca 111183
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 7e-19 Identities = 111/131 (84%) Strand = Plus / Minus Query: 3 gaggcggagacggacgcggaccgggagacggcgctgagctacggcctcacggtcgccggg 62 |||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| | Sbjct: 7470593 gaggcggagaaggacgcggacggggaggcggcgctgagctacgggctcacggtcgccagc 7470534 Query: 63 aaagggcaggagcaggtgccggaggagctggacagggtcctgaaggagtacacaaccttc 122 || ||||||||| ||| || ||||||||| ||| ||| |||||||||| |||||| Sbjct: 7470533 aaggggcaggaggcggtcttggcccagctggacaaggtactggaggagtacaccaccttc 7470474 Query: 123 tccgtcaagca 133 ||||| ||||| Sbjct: 7470473 tccgtgaagca 7470463
>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0042A11, complete sequence Length = 113049 Score = 101 bits (51), Expect = 7e-19 Identities = 111/131 (84%) Strand = Plus / Minus Query: 3 gaggcggagacggacgcggaccgggagacggcgctgagctacggcctcacggtcgccggg 62 |||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| | Sbjct: 1654 gaggcggagaaggacgcggacggggaggcggcgctgagctacgggctcacggtcgccagc 1595 Query: 63 aaagggcaggagcaggtgccggaggagctggacagggtcctgaaggagtacacaaccttc 122 || ||||||||| ||| || ||||||||| ||| ||| |||||||||| |||||| Sbjct: 1594 aaggggcaggaggcggtcttggcccagctggacaaggtactggaggagtacaccaccttc 1535 Query: 123 tccgtcaagca 133 ||||| ||||| Sbjct: 1534 tccgtgaagca 1524
>dbj|AK111568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072L11, full insert sequence Length = 1785 Score = 101 bits (51), Expect = 7e-19 Identities = 111/131 (84%) Strand = Plus / Plus Query: 3 gaggcggagacggacgcggaccgggagacggcgctgagctacggcctcacggtcgccggg 62 |||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| | Sbjct: 609 gaggcggagaaggacgcggacggggaggcggcgctgagctacgggctcacggtcgccagc 668 Query: 63 aaagggcaggagcaggtgccggaggagctggacagggtcctgaaggagtacacaaccttc 122 || ||||||||| ||| || ||||||||| ||| ||| |||||||||| |||||| Sbjct: 669 aaggggcaggaggcggtcttggcccagctggacaaggtactggaggagtacaccaccttc 728 Query: 123 tccgtcaagca 133 ||||| ||||| Sbjct: 729 tccgtgaagca 739
>dbj|AK098994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096B20, full insert sequence Length = 1758 Score = 101 bits (51), Expect = 7e-19 Identities = 111/131 (84%) Strand = Plus / Plus Query: 3 gaggcggagacggacgcggaccgggagacggcgctgagctacggcctcacggtcgccggg 62 |||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| | Sbjct: 609 gaggcggagaaggacgcggacggggaggcggcgctgagctacgggctcacggtcgccagc 668 Query: 63 aaagggcaggagcaggtgccggaggagctggacagggtcctgaaggagtacacaaccttc 122 || ||||||||| ||| || ||||||||| ||| ||| |||||||||| |||||| Sbjct: 669 aaggggcaggaggcggtcttggcccagctggacaaggtactggaggagtacaccaccttc 728 Query: 123 tccgtcaagca 133 ||||| ||||| Sbjct: 729 tccgtgaagca 739
>gb|AY108955.1| Zea mays PCO083425 mRNA sequence Length = 1107 Score = 61.9 bits (31), Expect = 6e-07 Identities = 46/51 (90%) Strand = Plus / Plus Query: 86 ggagctggacagggtcctgaaggagtacacaaccttctccgtcaagcaggt 136 |||||||||||||||||| |||||||||| |||||||| || |||||||| Sbjct: 10 ggagctggacagggtcctcgaggagtacaccaccttctcggtgaagcaggt 60
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 gggcaggagcaggtgccggag 86 ||||||||||||||||||||| Sbjct: 1276663 gggcaggagcaggtgccggag 1276683
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 gaggcggagacggacgcggac 23 ||||||||||||||||||||| Sbjct: 7273193 gaggcggagacggacgcggac 7273213 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 agcaggtcgacgaaggggcgggcg 153 ||||||||| |||||||||||||| Sbjct: 4421361 agcaggtcggcgaaggggcgggcg 4421384
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence Length = 1590432 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gcctcacggtcgccgggaaa 65 |||||||||||||||||||| Sbjct: 1307756 gcctcacggtcgccgggaaa 1307775
>gb|AC087327.7| Trypanosoma brucei chromosome 4 clone RPCI93-3I12, complete sequence Length = 158030 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 gcctcacggtcgccgggaaa 65 |||||||||||||||||||| Sbjct: 16259 gcctcacggtcgccgggaaa 16240
>ref|XM_587477.2| PREDICTED: Bos taurus similar to SET binding factor 1 isoform a (LOC510349), mRNA Length = 5442 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ctggacagggtcctgaagga 109 |||||||||||||||||||| Sbjct: 3152 ctggacagggtcctgaagga 3133
>gb|AC087214.4| Papio anubis clone RP41-150K7, complete sequence Length = 141415 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 caggtgccggaggagctgga 94 |||||||||||||||||||| Sbjct: 58786 caggtgccggaggagctgga 58767
>ref|XM_821307.1| Trypanosoma brucei TREU927 clone RPCI93-3I12 hypothetical protein (Tb927.4.4760) partial mRNA Length = 2862 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 gcctcacggtcgccgggaaa 65 |||||||||||||||||||| Sbjct: 1994 gcctcacggtcgccgggaaa 1975
>gb|AC091537.2| Rattus norvegicus strain Brown Norway clone RP31-78C13, complete sequence Length = 119664 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 caggtgccggaggagctgga 94 |||||||||||||||||||| Sbjct: 50830 caggtgccggaggagctgga 50811
>ref|NM_169253.1| Drosophila melanogaster CG11984-RC, transcript variant C (CG11984), mRNA Length = 2561 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 1460 gccggaggagctggacaggg 1479
>ref|NM_169252.1| Drosophila melanogaster CG11984-RA, transcript variant A (CG11984), mRNA Length = 2559 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 1458 gccggaggagctggacaggg 1477
>ref|NM_141604.2| Drosophila melanogaster CG11984-RB, transcript variant B (CG11984), mRNA Length = 2662 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 1561 gccggaggagctggacaggg 1580
>gb|AY061066.1| Drosophila melanogaster LD03515 full length cDNA Length = 2563 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 1444 gccggaggagctggacaggg 1463
>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold Length = 1678549 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 caggtgccggaggagctgga 94 |||||||||||||||||||| Sbjct: 612689 caggtgccggaggagctgga 612670
>gb|AC009258.3|AC009258 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone BACR09F04, complete sequence Length = 176036 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 74008 gccggaggagctggacaggg 73989
>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone BACR02G22, complete sequence Length = 164982 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 152846 gccggaggagctggacaggg 152827
>gb|AC157823.2| Mus musculus BAC clone RP23-382L21 from chromosome 12, complete sequence Length = 203726 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 gggcaggagcaggtgccggaggag 89 ||||||||||||||| |||||||| Sbjct: 14479 gggcaggagcaggtgtcggaggag 14502
>gb|AC130184.4| Macaca mulatta clone CH250-513J21, complete sequence Length = 160850 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 caggtgccggaggagctgga 94 |||||||||||||||||||| Sbjct: 12344 caggtgccggaggagctgga 12325
>gb|BT024222.1| Drosophila melanogaster LP17815 full insert cDNA Length = 2398 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 1278 gccggaggagctggacaggg 1297
>gb|M86372.1|RATTREL08 Rattus norvegicus tropoelastin (tropoelastin) gene, exons 21, 22, and partial cds Length = 1105 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 caggtgccggaggagctgga 94 |||||||||||||||||||| Sbjct: 572 caggtgccggaggagctgga 591
>gb|AE003681.5| Drosophila melanogaster chromosome 3R, section 19 of 118 of the complete sequence Length = 306650 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 80237 gccggaggagctggacaggg 80218
>dbj|AP001731.1| Homo sapiens genomic DNA, chromosome 21q, section 75/105 Length = 340000 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 caggagcaggtgccggaggagctg 92 |||||||||| ||||||||||||| Sbjct: 242725 caggagcaggagccggaggagctg 242702
>gb|BT001502.1| Drosophila melanogaster LD34776 full insert cDNA Length = 2402 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 1328 gccggaggagctggacaggg 1347
>gb|BT001483.1| Drosophila melanogaster LD22379 full insert cDNA Length = 2451 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gccggaggagctggacaggg 99 |||||||||||||||||||| Sbjct: 1328 gccggaggagctggacaggg 1347
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cggaccgggagacggcgctg 38 |||||||||||||||||||| Sbjct: 2827218 cggaccgggagacggcgctg 2827237
>dbj|AP000163.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 15/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 caggagcaggtgccggaggagctg 92 |||||||||| ||||||||||||| Sbjct: 29142 caggagcaggagccggaggagctg 29119
>dbj|AP000021.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 12/13 Length = 100000 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 caggagcaggtgccggaggagctg 92 |||||||||| ||||||||||||| Sbjct: 63538 caggagcaggagccggaggagctg 63515
>dbj|AP001422.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:S166, LB7T-ERG region, complete sequence Length = 83533 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 caggagcaggtgccggaggagctg 92 |||||||||| ||||||||||||| Sbjct: 80558 caggagcaggagccggaggagctg 80535
>gb|AC008341.3| Drosophila melanogaster clone BACR15P11, complete sequence Length = 171235 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 81 ccggaggagctggacagggtcctgaag 107 |||||||||||||||||| ||| |||| Sbjct: 34494 ccggaggagctggacaggatccagaag 34520
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 ccgtcaagcaggtcgacga 142 ||||||||||||||||||| Sbjct: 2283423 ccgtcaagcaggtcgacga 2283441
>ref|XM_960523.1| Neurospora crassa OR74A hypothetical protein (NCU02934.1) partial mRNA Length = 2826 Score = 38.2 bits (19), Expect = 9.0 Identities = 31/35 (88%) Strand = Plus / Plus Query: 5 ggcggagacggacgcggaccgggagacggcgctga 39 ||||||| ||| | ||||||||||||||| ||||| Sbjct: 2686 ggcggagccggccacggaccgggagacggagctga 2720
>ref|XM_955712.1| Neurospora crassa OR74A hypothetical protein (NCU08938.1) partial mRNA Length = 1227 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggagcaggtgccggaggag 89 ||||||||||||||||||| Sbjct: 95 ggagcaggtgccggaggag 77
>ref|XM_330121.1| Neurospora crassa OR74A hypothetical protein (NCU02934.1) partial mRNA Length = 2826 Score = 38.2 bits (19), Expect = 9.0 Identities = 31/35 (88%) Strand = Plus / Plus Query: 5 ggcggagacggacgcggaccgggagacggcgctga 39 ||||||| ||| | ||||||||||||||| ||||| Sbjct: 2686 ggcggagccggccacggaccgggagacggagctga 2720
>ref|XM_331329.1| Neurospora crassa OR74A hypothetical protein (NCU08938.1) partial mRNA Length = 1227 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ggagcaggtgccggaggag 89 ||||||||||||||||||| Sbjct: 95 ggagcaggtgccggaggag 77
>ref|XM_753714.1| Ustilago maydis 521 hypothetical protein (UM02660.1) partial mRNA Length = 2667 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 79 tgccggaggagctggacagggtc 101 ||||||||||||||||| ||||| Sbjct: 1474 tgccggaggagctggacggggtc 1452
>ref|XM_385244.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05068.1) partial mRNA Length = 2091 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 ctggacagggtcctgaagg 108 ||||||||||||||||||| Sbjct: 1656 ctggacagggtcctgaagg 1638
>emb|BX063853.1|CNS09LFL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC45DF07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1001 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 142 ggagacggacgcggaccgg 160
>emb|BX060118.1|CNS09IJU Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC40BE03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1047 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 885 ggagacggacgcggaccgg 903
>emb|BX054899.1|CNS09EIV Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC33BB01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 941 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 461 ggagacggacgcggaccgg 479
>emb|BX046530.1|CNS0982E Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC20AH06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 947 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 807 ggagacggacgcggaccgg 789
>emb|BX043323.1|CNS095LB Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC15DE01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1007 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 957 ggagacggacgcggaccgg 975
>emb|BX030841.1|CNS08VYL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA46AC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 976 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 804 ggagacggacgcggaccgg 786
>emb|BX030840.1|CNS08VYK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA46AC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1001 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 694 ggagacggacgcggaccgg 712
>emb|BX024837.1|CNS08RBT Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA38AC06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 862 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 812 ggagacggacgcggaccgg 794
>emb|BX294024.1|NC20H10 Neurospora crassa DNA linkage group V Cosmid contig 20H10 Length = 96283 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 ggagcaggtgccggaggag 89 ||||||||||||||||||| Sbjct: 48584 ggagcaggtgccggaggag 48602
>emb|AL627276.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 12/20 Length = 274050 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 gccggaggagctggacagg 98 ||||||||||||||||||| Sbjct: 17346 gccggaggagctggacagg 17328
>ref|NM_165673.1| Drosophila melanogaster CG1968-RA, transcript variant A (CG1968), mRNA Length = 2018 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 81 ccggaggagctggacagggtcctgaag 107 |||||||||||||||||| ||| |||| Sbjct: 34 ccggaggagctggacaggatccagaag 60
>ref|NM_136632.2| Drosophila melanogaster CG1968-RB, transcript variant B (CG1968), mRNA Length = 2086 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 81 ccggaggagctggacagggtcctgaag 107 |||||||||||||||||| ||| |||| Sbjct: 34 ccggaggagctggacaggatccagaag 60
>gb|AY061082.1| Drosophila melanogaster LD06894 full length cDNA Length = 2091 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 81 ccggaggagctggacagggtcctgaag 107 |||||||||||||||||| ||| |||| Sbjct: 28 ccggaggagctggacaggatccagaag 54
>ref|NM_001037154.1| Rattus norvegicus protocadherin gamma A3 (Pcdhga3), mRNA Length = 4712 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 gtgccggaggagctggaca 96 ||||||||||||||||||| Sbjct: 264 gtgccggaggagctggaca 282
>gb|AC151718.5| Mus musculus BAC clone RP23-142J2 from chromosome 7, complete sequence Length = 213292 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 gggaaagggcaggagcaggtgcc 82 ||||||||| ||||||||||||| Sbjct: 183797 gggaaaggggaggagcaggtgcc 183775
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ggcgctgagctacggcctc 50 ||||||||||||||||||| Sbjct: 4128559 ggcgctgagctacggcctc 4128541
>dbj|AK089399.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730022L22 product:unclassifiable, full insert sequence Length = 2334 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 aaagggcaggagcaggtgc 81 ||||||||||||||||||| Sbjct: 1771 aaagggcaggagcaggtgc 1789
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ggcggagacggacgcggac 23 ||||||||||||||||||| Sbjct: 26188407 ggcggagacggacgcggac 26188389 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 cggaccgggagacggcgct 37 ||||||||||||||||||| Sbjct: 22014632 cggaccgggagacggcgct 22014650
>gb|AY574014.1| Rattus norvegicus protocadherin gamma a3 (Pcdhga3) mRNA, complete cds Length = 4712 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 gtgccggaggagctggaca 96 ||||||||||||||||||| Sbjct: 264 gtgccggaggagctggaca 282
>gb|AY787771.1| Propionibacterium acnes isolate SG2 cAMP factor 3 gene, complete cds Length = 816 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 ccgtcaagcaggtcgacga 142 ||||||||||||||||||| Sbjct: 719 ccgtcaagcaggtcgacga 737
>gb|AY787766.1| Propionibacterium acnes strain NCTC 10390 cAMP factor 3 gene, complete cds Length = 816 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 ccgtcaagcaggtcgacga 142 ||||||||||||||||||| Sbjct: 719 ccgtcaagcaggtcgacga 737
>gb|AY726657.1| Propionibacterium acnes Camp3 gene, complete cds Length = 816 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 ccgtcaagcaggtcgacga 142 ||||||||||||||||||| Sbjct: 719 ccgtcaagcaggtcgacga 737
>ref|XM_574131.1| PREDICTED: Rattus norvegicus similar to protocadherin gamma A3 (LOC498847), mRNA Length = 2477 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 gtgccggaggagctggaca 96 ||||||||||||||||||| Sbjct: 94 gtgccggaggagctggaca 112
>dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0612G07 Length = 182548 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 cggaccgggagacggcgct 37 ||||||||||||||||||| Sbjct: 52505 cggaccgggagacggcgct 52523
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ggcggagacggacgcggac 23 ||||||||||||||||||| Sbjct: 52947 ggcggagacggacgcggac 52929
>ref|XM_311198.2| Anopheles gambiae str. PEST ENSANGP00000019083 (ENSANGG00000016594), mRNA Length = 1481 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ggagacggacgcggaccgg 26 ||||||||||||||||||| Sbjct: 998 ggagacggacgcggaccgg 1016
>gb|AY648560.1| Klebsiella pneumoniae strain M5a1 Orf1 gene, partial cds; LysR-like regulatory protein (mhbR), putative 3-hydroxybenzoate transporter (mhbT), gentisate 1,2-dioxygenase (mhbD), fumarylpyruvate hydrolase (mhbH), maleylpyruvate isomerase (mhbI), 3-hydroxybenzoate-6-hydroxylase (mhbM), and Orf2 genes, complete cds; and Orf3 gene, partial cds Length = 8216 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 ggcgctgagctacggcctc 50 ||||||||||||||||||| Sbjct: 2261 ggcgctgagctacggcctc 2279
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 gccggaggagctggacagg 98 ||||||||||||||||||| Sbjct: 2694570 gccggaggagctggacagg 2694552
>gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16 of 73 of the complete sequence Length = 243313 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 81 ccggaggagctggacagggtcctgaag 107 |||||||||||||||||| ||| |||| Sbjct: 221416 ccggaggagctggacaggatccagaag 221442
>gb|AC140282.3| Mus musculus BAC clone RP24-501L1 from 1, complete sequence Length = 206690 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 gggaaagggcaggagcagg 78 ||||||||||||||||||| Sbjct: 97784 gggaaagggcaggagcagg 97766
>gb|U39514.1|ESU39514 Echinometra sp. clone A-G2 bindin gene, partial cds Length = 753 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 68 gcaggagcaggtgccggaggagctgga 94 |||||||||||||| ||||||| |||| Sbjct: 601 gcaggagcaggtgcaggaggaggtgga 627
>gb|U39513.1|ESU39513 Echinometra sp. clone A-G1 bindin gene, partial cds Length = 756 Score = 38.2 bits (19), Expect = 9.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 68 gcaggagcaggtgccggaggagctgga 94 |||||||||||||| ||||||| |||| Sbjct: 598 gcaggagcaggtgcaggaggaggtgga 624
>emb|AL627122.18| Mouse DNA sequence from clone RP23-132E8 on chromosome 4, complete sequence Length = 166814 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 aaagggcaggagcaggtgc 81 ||||||||||||||||||| Sbjct: 39718 aaagggcaggagcaggtgc 39736 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,114,534 Number of Sequences: 3902068 Number of extensions: 1114534 Number of successful extensions: 88642 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87699 Number of HSP's gapped (non-prelim): 943 length of query: 183 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 161 effective length of database: 17,147,199,772 effective search space: 2760699163292 effective search space used: 2760699163292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)