ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59c07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107E04, full insert sequence Length = 2422 Score = 190 bits (96), Expect = 3e-45 Identities = 252/304 (82%) Strand = Plus / Plus Query: 149 acggtggccgcgggggtcctcatgctgctctattaccgggcgacgcgcgtgccggccgcc 208 ||||||||||| ||| | || || ||||||| ||| ||||||||||||||||||||||| Sbjct: 260 acggtggccgccgggatactgctggtgctctactacagggcgacgcgcgtgccggccgcc 319 Query: 209 ggcgagggcagggcggcgtggctgggcatgctggcggcggagctctggtacgccgcctac 268 ||||| || ||||||||||||||||| ||| ||||||||||||||||| ||||| |||| Sbjct: 320 ggcgaagggagggcggcgtggctggggatggcggcggcggagctctggttcgccgtctac 379 Query: 269 tgggccgtcacgcagtccgtccgctggagccccgtccgccgccgccccttcaaggaccgg 328 |||| | || ||||||||||||| ||| ||||| ||||||||||| |||||| |||| || Sbjct: 380 tgggtcatcgcgcagtccgtccggtggcgccccttccgccgccgcaccttcagggacagg 439 Query: 329 ctcgccgccaggcacggagaaaggctaccttgcgtggacatcttcgtatgcaccgcggac 388 ||||||| || | | | ||| |||||| | ||||| ||||| |||||||| ||||| Sbjct: 440 ctcgccgagagatatgaacaaaatctacctggtgtggatatctttgtatgcactgcggat 499 Query: 389 ccctattcggagccgccgagcctcgtcgtctccaccatcctatcgctcatggcgtacaat 448 || | || ||||| || ||||| ||| |||| ||||||||||| | ||||| |||||| Sbjct: 500 ccacaatcagagccaccaagccttgtcatctctaccatcctatcagttatggcatacaat 559 Query: 449 tacc 452 |||| Sbjct: 560 tacc 563
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 188 bits (95), Expect = 1e-44 Identities = 164/187 (87%) Strand = Plus / Minus Query: 149 acggtggccgcgggggtcctcatgctgctctattaccgggcgacgcgcgtgccggccgcc 208 ||||||||||| ||| | || || ||||||| ||| ||||||||||||||||||||||| Sbjct: 18266444 acggtggccgccgggatactgctggtgctctactacagggcgacgcgcgtgccggccgcc 18266385 Query: 209 ggcgagggcagggcggcgtggctgggcatgctggcggcggagctctggtacgccgcctac 268 ||||| || |||||||||||||||| ||| ||||||||||||||||| ||||| |||| Sbjct: 18266384 ggcgaagggcgggcggcgtggctggggatggcggcggcggagctctggttcgccgtctac 18266325 Query: 269 tgggccgtcacgcagtccgtccgctggagccccgtccgccgccgccccttcaaggaccgg 328 |||| | |||||||||||||||| ||| ||||||||||||||||| |||||||| || || Sbjct: 18266324 tgggtcatcacgcagtccgtccggtggtgccccgtccgccgccgcaccttcaagaacagg 18266265 Query: 329 ctcgccg 335 ||||||| Sbjct: 18266264 ctcgccg 18266258 Score = 180 bits (91), Expect = 3e-42 Identities = 163/187 (87%) Strand = Plus / Minus Query: 149 acggtggccgcgggggtcctcatgctgctctattaccgggcgacgcgcgtgccggccgcc 208 ||||||||||| ||| | || || ||||||| ||| ||||||||||||||||||||||| Sbjct: 18259323 acggtggccgccgggatactgctggtgctctactacagggcgacgcgcgtgccggccgcc 18259264 Query: 209 ggcgagggcagggcggcgtggctgggcatgctggcggcggagctctggtacgccgcctac 268 ||||| || ||||||||||||||||| ||| ||||||||||||||||| ||||| |||| Sbjct: 18259263 ggcgaagggagggcggcgtggctggggatggcggcggcggagctctggttcgccgtctac 18259204 Query: 269 tgggccgtcacgcagtccgtccgctggagccccgtccgccgccgccccttcaaggaccgg 328 |||| | || ||||||||||||| ||| ||||| ||||||||||| |||||| |||| || Sbjct: 18259203 tgggtcatcgcgcagtccgtccggtggcgccccttccgccgccgcaccttcagggacagg 18259144 Query: 329 ctcgccg 335 ||||||| Sbjct: 18259143 ctcgccg 18259137 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 186 gggcgacgcgcgtgccggccgccggcgagggcagggcggcgtggctgggcatgctggcgg 245 ||||||||| | ||||||||| ||||||||| |||||||||||| | || ||| ||||| Sbjct: 18252709 gggcgacgcacatgccggccggcggcgaggggagggcggcgtgggtagggatggaggcgg 18252650 Query: 246 cggag 250 ||||| Sbjct: 18252649 cggag 18252645 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 297 gccccgtccgccgccgccccttcaaggaccggctcgccg 335 ||||||||||||||||| | ||||||||| ||||||||| Sbjct: 18252585 gccccgtccgccgccgcacgttcaaggacaggctcgccg 18252547 Score = 48.1 bits (24), Expect = 0.025 Identities = 81/100 (81%) Strand = Plus / Minus Query: 353 ctaccttgcgtggacatcttcgtatgcaccgcggacccctattcggagccgccgagcctc 412 |||||| | ||||| ||||| |||||||| ||||| || | || ||||| || ||||| Sbjct: 18256409 ctacctggtgtggatatctttgtatgcactgcggatccacaatcagagccaccaagcctt 18256350 Query: 413 gtcgtctccaccatcctatcgctcatggcgtacaattacc 452 ||| |||| ||||||||||| | ||||| |||||||||| Sbjct: 18256349 gtcatctctaccatcctatcagttatggcatacaattacc 18256310 Score = 46.1 bits (23), Expect = 0.099 Identities = 47/55 (85%) Strand = Plus / Minus Query: 398 gagccgccgagcctcgtcgtctccaccatcctatcgctcatggcgtacaattacc 452 ||||| || ||||| ||| |||| ||||||||||| ||||||| |||||||||| Sbjct: 18264159 gagccaccaagccttgtcatctctaccatcctatcagtcatggcatacaattacc 18264105
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 188 bits (95), Expect = 1e-44 Identities = 164/187 (87%) Strand = Plus / Minus Query: 149 acggtggccgcgggggtcctcatgctgctctattaccgggcgacgcgcgtgccggccgcc 208 ||||||||||| ||| | || || ||||||| ||| ||||||||||||||||||||||| Sbjct: 115168 acggtggccgccgggatactgctggtgctctactacagggcgacgcgcgtgccggccgcc 115109 Query: 209 ggcgagggcagggcggcgtggctgggcatgctggcggcggagctctggtacgccgcctac 268 ||||| || |||||||||||||||| ||| ||||||||||||||||| ||||| |||| Sbjct: 115108 ggcgaagggcgggcggcgtggctggggatggcggcggcggagctctggttcgccgtctac 115049 Query: 269 tgggccgtcacgcagtccgtccgctggagccccgtccgccgccgccccttcaaggaccgg 328 |||| | |||||||||||||||| ||| ||||||||||||||||| |||||||| || || Sbjct: 115048 tgggtcatcacgcagtccgtccggtggtgccccgtccgccgccgcaccttcaagaacagg 114989 Query: 329 ctcgccg 335 ||||||| Sbjct: 114988 ctcgccg 114982 Score = 180 bits (91), Expect = 3e-42 Identities = 163/187 (87%) Strand = Plus / Minus Query: 149 acggtggccgcgggggtcctcatgctgctctattaccgggcgacgcgcgtgccggccgcc 208 ||||||||||| ||| | || || ||||||| ||| ||||||||||||||||||||||| Sbjct: 108047 acggtggccgccgggatactgctggtgctctactacagggcgacgcgcgtgccggccgcc 107988 Query: 209 ggcgagggcagggcggcgtggctgggcatgctggcggcggagctctggtacgccgcctac 268 ||||| || ||||||||||||||||| ||| ||||||||||||||||| ||||| |||| Sbjct: 107987 ggcgaagggagggcggcgtggctggggatggcggcggcggagctctggttcgccgtctac 107928 Query: 269 tgggccgtcacgcagtccgtccgctggagccccgtccgccgccgccccttcaaggaccgg 328 |||| | || ||||||||||||| ||| ||||| ||||||||||| |||||| |||| || Sbjct: 107927 tgggtcatcgcgcagtccgtccggtggcgccccttccgccgccgcaccttcagggacagg 107868 Query: 329 ctcgccg 335 ||||||| Sbjct: 107867 ctcgccg 107861 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 186 gggcgacgcgcgtgccggccgccggcgagggcagggcggcgtggctgggcatgctggcgg 245 ||||||||| | ||||||||| ||||||||| |||||||||||| | || ||| ||||| Sbjct: 101433 gggcgacgcacatgccggccggcggcgaggggagggcggcgtgggtagggatggaggcgg 101374 Query: 246 cggag 250 ||||| Sbjct: 101373 cggag 101369 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 297 gccccgtccgccgccgccccttcaaggaccggctcgccg 335 ||||||||||||||||| | ||||||||| ||||||||| Sbjct: 101309 gccccgtccgccgccgcacgttcaaggacaggctcgccg 101271 Score = 48.1 bits (24), Expect = 0.025 Identities = 81/100 (81%) Strand = Plus / Minus Query: 353 ctaccttgcgtggacatcttcgtatgcaccgcggacccctattcggagccgccgagcctc 412 |||||| | ||||| ||||| |||||||| ||||| || | || ||||| || ||||| Sbjct: 105133 ctacctggtgtggatatctttgtatgcactgcggatccacaatcagagccaccaagcctt 105074 Query: 413 gtcgtctccaccatcctatcgctcatggcgtacaattacc 452 ||| |||| ||||||||||| | ||||| |||||||||| Sbjct: 105073 gtcatctctaccatcctatcagttatggcatacaattacc 105034 Score = 46.1 bits (23), Expect = 0.099 Identities = 47/55 (85%) Strand = Plus / Minus Query: 398 gagccgccgagcctcgtcgtctccaccatcctatcgctcatggcgtacaattacc 452 ||||| || ||||| ||| |||| ||||||||||| ||||||| |||||||||| Sbjct: 112883 gagccaccaagccttgtcatctctaccatcctatcagtcatggcatacaattacc 112829
>gb|AF432500.1|AF432500 Oryza sativa cellulose synthase-like protein OsCslE1 gene, complete cds Length = 8155 Score = 180 bits (91), Expect = 3e-42 Identities = 163/187 (87%) Strand = Plus / Plus Query: 149 acggtggccgcgggggtcctcatgctgctctattaccgggcgacgcgcgtgccggccgcc 208 ||||||||||| ||| | || || ||||||| ||| ||||||||||||||||||||||| Sbjct: 1676 acggtggccgccgggatactgctggtgctctactacagggcgacgcgcgtgccggccgcc 1735 Query: 209 ggcgagggcagggcggcgtggctgggcatgctggcggcggagctctggtacgccgcctac 268 ||||| || ||||||||||||||||| ||| ||||||||||||||||| ||||| |||| Sbjct: 1736 ggcgaagggagggcggcgtggctggggatggcggcggcggagctctggttcgccgtctac 1795 Query: 269 tgggccgtcacgcagtccgtccgctggagccccgtccgccgccgccccttcaaggaccgg 328 |||| | || ||||||||||||| ||| ||||| ||||||||||| |||||| |||| || Sbjct: 1796 tgggtcatcgcgcagtccgtccggtggcgccccttccgccgccgcaccttcagggacagg 1855 Query: 329 ctcgccg 335 ||||||| Sbjct: 1856 ctcgccg 1862 Score = 48.1 bits (24), Expect = 0.025 Identities = 81/100 (81%) Strand = Plus / Plus Query: 353 ctaccttgcgtggacatcttcgtatgcaccgcggacccctattcggagccgccgagcctc 412 |||||| | ||||| ||||| |||||||| ||||| || | || ||||| || ||||| Sbjct: 4590 ctacctggtgtggatatctttgtatgcactgcggatccacaatcagagccaccaagcctt 4649 Query: 413 gtcgtctccaccatcctatcgctcatggcgtacaattacc 452 ||| |||| ||||||||||| | ||||| |||||||||| Sbjct: 4650 gtcatctctaccatcctatcagttatggcatacaattacc 4689
>ref|XM_467560.1| Oryza sativa (japonica cultivar-group), mRNA Length = 819 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 248 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 307 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 308 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 358
>ref|XM_467561.1| Oryza sativa (japonica cultivar-group), mRNA Length = 513 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 248 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 307 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 308 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 358
>gb|AF432501.1|AF432501 Oryza sativa cellulose synthase-like protein OsCslE2 gene, complete cds Length = 6037 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 915 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 974 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 975 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 1025
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 30167606 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 30167665 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 30167666 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 30167716
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 147203 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 147262 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 147263 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 147313
>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_G07 Length = 93240 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 40310 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 40369 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 40370 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 40420
>dbj|AK111344.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F12, full insert sequence Length = 513 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 248 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 307 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 308 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 358
>dbj|AK107881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D06, full insert sequence Length = 819 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 248 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 307 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 308 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 358
>dbj|AK101487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042D19, full insert sequence Length = 2346 Score = 69.9 bits (35), Expect = 7e-09 Identities = 92/111 (82%) Strand = Plus / Plus Query: 223 ggcgtggctgggcatgctggcggcggagctctggtacgccgcctactgggccgtcacgca 282 ||||||||| || ||||| |||||||||||||||| || | |||||||| | | |||| Sbjct: 257 ggcgtggctcgggatgctcgcggcggagctctggttcggcttctactgggtcctgacgct 316 Query: 283 gtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgc 333 |||||| || ||| |||||||| ||||||| ||||||| ||||| ||||| Sbjct: 317 gtccgtgcggtggtgccccgtctaccgccgcaccttcaaagaccgcctcgc 367
>gb|AY022515.1| Oryza sativa microsatellite MRG4840 containing (ATA)X19, genomic sequence Length = 257 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 279 cgcagtccgtccgctggagccccgtccgccgccgccccttcaaggaccggctcgccg 335 ||||||||||||| ||| ||||| ||||||||||| |||||| |||| ||||||||| Sbjct: 252 cgcagtccgtccggtggcgccccttccgccgccgcaccttcagggacaggctcgccg 196
>dbj|AK103810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147A19, full insert sequence Length = 2127 Score = 48.1 bits (24), Expect = 0.025 Identities = 81/100 (81%) Strand = Plus / Plus Query: 353 ctaccttgcgtggacatcttcgtatgcaccgcggacccctattcggagccgccgagcctc 412 |||||| | ||||| ||||| |||||||| ||||| || | || ||||| || ||||| Sbjct: 131 ctacctggtgtggatatctttgtatgcactgcggatccacaatcagagccaccaagcctt 190 Query: 413 gtcgtctccaccatcctatcgctcatggcgtacaattacc 452 ||| |||| ||||||||||| | ||||| |||||||||| Sbjct: 191 gtcatctctaccatcctatcagttatggcatacaattacc 230
>gb|AC120534.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0084A20, complete sequence Length = 139391 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 ggtacgccgcctactgggccg 275 ||||||||||||||||||||| Sbjct: 82424 ggtacgccgcctactgggccg 82404
>emb|AL445933.32| Human DNA sequence from clone RP11-486B10 on chromosome 1 Contains the EDN2 gene for endothelin 2, the 3' end of the HIVEP3 gene for human immunodeficiency virus type I enhancer binding protein 3 and a novel gene, complete sequence Length = 154153 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cagagatggaggagaaggcca 83 ||||||||||||||||||||| Sbjct: 25491 cagagatggaggagaaggcca 25471
>gb|AE005883.1| Caulobacter crescentus CB15 section 209 of 359 of the complete genome Length = 10450 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cggcgtggctgggcatgctgg 242 ||||||||||||||||||||| Sbjct: 4165 cggcgtggctgggcatgctgg 4185
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 ggtacgccgcctactgggccg 275 ||||||||||||||||||||| Sbjct: 2941611 ggtacgccgcctactgggccg 2941591 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 cgcgtgccggccgccggcgagggc 217 |||||||||||||||| ||||||| Sbjct: 4003433 cgcgtgccggccgccgccgagggc 4003410
>gb|L25317.1|CCRILVBN Caulobacter crescentus leader peptide, acetolactate synthase (ilvB), and acetohydroxy acid synthase (ilvN) genes, complete cds Length = 2970 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cggcgtggctgggcatgctgg 242 ||||||||||||||||||||| Sbjct: 1139 cggcgtggctgggcatgctgg 1159
>ref|XM_242296.3| PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 (predicted) (Ddx31_predicted), mRNA Length = 3294 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 cccgtccgccgccgccccttc 319 ||||||||||||||||||||| Sbjct: 264 cccgtccgccgccgccccttc 244
>dbj|AK099442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021A06, full insert sequence Length = 3159 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 ggtacgccgcctactgggccg 275 ||||||||||||||||||||| Sbjct: 47 ggtacgccgcctactgggccg 67
>dbj|AK073141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024N08, full insert sequence Length = 2234 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 ggtacgccgcctactgggccg 275 ||||||||||||||||||||| Sbjct: 43 ggtacgccgcctactgggccg 63
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 ggtacgccgcctactgggccg 275 ||||||||||||||||||||| Sbjct: 2950642 ggtacgccgcctactgggccg 2950622 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 cgcgtgccggccgccggcgagggc 217 |||||||||||||||| ||||||| Sbjct: 4012127 cgcgtgccggccgccgccgagggc 4012104
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gcgacgcgcgtgccggccgc 207 |||||||||||||||||||| Sbjct: 2026076 gcgacgcgcgtgccggccgc 2026057
>gb|DQ219776.1| Sitta canadensis NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial Length = 1041 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 555 agagatggaggagaaggcca 536
>gb|AC134044.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019D06 map S10616A, complete sequence Length = 182486 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 cgcgtgccggccgccggcgagggc 217 |||||||||||||||| ||||||| Sbjct: 131059 cgcgtgccggccgccgccgagggc 131036
>ref|XM_606910.2| PREDICTED: Bos taurus similar to protein tyrosine phosphatase, non-receptor type 23 (LOC528487), mRNA Length = 4739 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gccggcgagggcagggcggc 225 |||||||||||||||||||| Sbjct: 1560 gccggcgagggcagggcggc 1541
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggcgacgcgcgtgccggccg 206 |||||||||||||||||||| Sbjct: 79172 ggcgacgcgcgtgccggccg 79153
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cgccgtcacggtggccgcgg 161 |||||||||||||||||||| Sbjct: 36126 cgccgtcacggtggccgcgg 36145
>gb|AY529958.1| Laniarius luehderi voucher ZMUC 119044 NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 1034 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 550 agagatggaggagaaggcca 531
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ggcgacgcgcgtgccggccg 206 |||||||||||||||||||| Sbjct: 1474736 ggcgacgcgcgtgccggccg 1474717
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gcatgctggcggcggagctc 253 |||||||||||||||||||| Sbjct: 3447798 gcatgctggcggcggagctc 3447779
>gb|AE006016.1| Caulobacter crescentus CB15 section 342 of 359 of the complete genome Length = 10963 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cgccggcgagggcagggcgg 224 |||||||||||||||||||| Sbjct: 3901 cgccggcgagggcagggcgg 3882
>gb|AY030133.1| Hylophilus ochraceiceps viridior NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial gene for mitochondrial product Length = 1041 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 555 agagatggaggagaaggcca 536
>gb|AY030132.1| Hylophilus ochraceiceps ferrugineifrons NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial gene for mitochondrial product Length = 1041 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 555 agagatggaggagaaggcca 536
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 gggcggcgtggctgggcatgctgg 242 |||||||| ||||||||||||||| Sbjct: 35275941 gggcggcgcggctgggcatgctgg 35275918
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 cgcgcgtgccggccgccggcgagg 215 |||||| ||||||||||||||||| Sbjct: 26655063 cgcgcgcgccggccgccggcgagg 26655086
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 gccggccgccggcgagggcagggc 222 ||||||||||||||| |||||||| Sbjct: 23947738 gccggccgccggcgatggcagggc 23947761
>gb|AC008760.7| Homo sapiens chromosome 19 clone CTD-3128G10, complete sequence Length = 200167 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gacgagagagcttgagagag 51 |||||||||||||||||||| Sbjct: 23037 gacgagagagcttgagagag 23056
>gb|AC171016.2| Gallus gallus BAC clone CH261-29C12 from chromosome ul, complete sequence Length = 168140 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gccccgtccgccgccgcccc 316 |||||||||||||||||||| Sbjct: 69916 gccccgtccgccgccgcccc 69897
>gb|AF290128.1|AF290128 Dolichonyx oryzivorus NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1038 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 555 agagatggaggagaaggcca 536
>gb|AF247138.1|AF247138 TT virus isolate T3PB, complete genome Length = 3838 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gtggcagagatggaggagaaggcc 82 |||| ||||||||||||||||||| Sbjct: 616 gtggaagagatggaggagaaggcc 639
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 cgcgcgtgccggccgccggcgagg 215 |||||| ||||||||||||||||| Sbjct: 66590 cgcgcgcgccggccgccggcgagg 66613
>gb|AY631367.1| Sterna albostriata NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 1036 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 550 agagatggaggagaaggcca 531
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 gccggccgccggcgagggcagggc 222 ||||||||||||||| |||||||| Sbjct: 77349 gccggccgccggcgatggcagggc 77372
>gb|AC007514.5|AC007514 Homo sapiens chromosome 14 clone BACs 209A20 and 396N8 map 14q31, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 agtggcagagatggaggagaaggc 81 |||||||||| ||||||||||||| Sbjct: 42891 agtggcagaggtggaggagaaggc 42914
>gb|AF099357.1|AF099357 Dolichonyx oryzivorous NADH dehydrogenase subunit 2 gene, complete cds; mitochondrial gene for mitochondrial product Length = 1041 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 555 agagatggaggagaaggcca 536
>dbj|AK058382.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-H07, full insert sequence Length = 719 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 cgcgcgtgccggccgccggcgagg 215 |||||| ||||||||||||||||| Sbjct: 62 cgcgcgcgccggccgccggcgagg 85
>gb|AY732891.1| Parus montanus isolate 33Medv NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial Length = 1041 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 555 agagatggaggagaaggcca 536
>gb|AY732889.1| Parus montanus isolate 31Medv NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial Length = 1041 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agagatggaggagaaggcca 83 |||||||||||||||||||| Sbjct: 555 agagatggaggagaaggcca 536
>gb|AF122917.1|AF122917 TT virus isolate JA4, complete genome Length = 3537 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gtggcagagatggaggagaaggcc 82 |||| ||||||||||||||||||| Sbjct: 527 gtggaagagatggaggagaaggcc 550
>gb|AF122919.1|AF122919 TT virus isolate JA10 unknown genes Length = 3539 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gtggcagagatggaggagaaggcc 82 |||| ||||||||||||||||||| Sbjct: 527 gtggaagagatggaggagaaggcc 550
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 gggcggcgtggctgggcatgctgg 242 |||||||| ||||||||||||||| Sbjct: 71786 gggcggcgcggctgggcatgctgg 71763
>dbj|AB030489.1| TT virus gene for pORF2a, pORF2b, pORF1, complete cds, clone:JaBD98 Length = 2860 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gtggcagagatggaggagaaggcc 82 |||| ||||||||||||||||||| Sbjct: 595 gtggaagagatggaggagaaggcc 618
>dbj|AB030488.1| TT virus gene for pORF2a, pORF2b, pORF1, complete cds, clone:JaBD89 Length = 2860 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gtggcagagatggaggagaaggcc 82 |||| ||||||||||||||||||| Sbjct: 595 gtggaagagatggaggagaaggcc 618
>dbj|AB030487.1| TT virus gene for pORF2a, pORF2b, pORF1, complete cds, clone:JaCHCTC19 Length = 2860 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 gtggcagagatggaggagaaggcc 82 |||| ||||||||||||||||||| Sbjct: 595 gtggaagagatggaggagaaggcc 618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,178,332 Number of Sequences: 3902068 Number of extensions: 3178332 Number of successful extensions: 69824 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69017 Number of HSP's gapped (non-prelim): 807 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
