ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479032.1| Oryza sativa (japonica cultivar-group), mRNA Length = 994 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccga 248 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| Sbjct: 690 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 749 Query: 249 agcctga 255 ||||||| Sbjct: 750 agcctga 756 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctg 335 ||||||||||| ||||| ||| |||| ||||||||| |||||||||||||| Sbjct: 637 gccacaccccgccgtgccggagctgcctaagcacgaagagccgccgcaccctg 689 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||||||| ||||| ||| |||||||||||||| Sbjct: 334 gccacaccccgtcgtgccggagttgccaaagcacgaa 370 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 653 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 710 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 291 ccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgc 336 |||| ||||| ||| |||| ||||||||| ||||||||||||||| Sbjct: 387 ccgtcgtgccggagttgcccaagcacgaagagccgccgcaccctgc 432 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagc 314 |||||||||||| ||||| ||| ||||||||| Sbjct: 556 gccacaccccgtcgtgccggagctgccaaagc 587
>ref|XM_507388.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113 mRNA Length = 1071 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccga 248 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748 Query: 249 agcctga 255 ||||||| Sbjct: 749 agcctga 755 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctg 335 ||||||||||| ||||| ||| |||| ||||||||| |||||||||||||| Sbjct: 636 gccacaccccgccgtgccggagctgcctaagcacgaagagccgccgcaccctg 688 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||||||| ||||| ||| |||||||||||||| Sbjct: 333 gccacaccccgtcgtgccggagttgccaaagcacgaa 369 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 291 ccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgc 336 |||| ||||| ||| |||| ||||||||| ||||||||||||||| Sbjct: 386 ccgtcgtgccggagttgcccaagcacgaagagccgccgcaccctgc 431 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagc 314 |||||||||||| ||||| ||| ||||||||| Sbjct: 555 gccacaccccgtcgtgccggagctgccaaagc 586
>ref|XM_506448.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113 mRNA Length = 1071 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccga 248 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748 Query: 249 agcctga 255 ||||||| Sbjct: 749 agcctga 755 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctg 335 ||||||||||| ||||| ||| |||| ||||||||| |||||||||||||| Sbjct: 636 gccacaccccgccgtgccggagctgcctaagcacgaagagccgccgcaccctg 688 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||||||| ||||| ||| |||||||||||||| Sbjct: 333 gccacaccccgtcgtgccggagttgccaaagcacgaa 369 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 291 ccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgc 336 |||| ||||| ||| |||| ||||||||| ||||||||||||||| Sbjct: 386 ccgtcgtgccggagttgcccaagcacgaagagccgccgcaccctgc 431 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagc 314 |||||||||||| ||||| ||| ||||||||| Sbjct: 555 gccacaccccgtcgtgccggagctgccaaagc 586
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 189 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccga 248 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| Sbjct: 24419311 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 24419252 Query: 249 agcctga 255 ||||||| Sbjct: 24419251 agcctga 24419245 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 221 ccgcaccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 |||||||||||| |||| |||||||||||||| ||| |||| |||||| Sbjct: 24417062 ccgcaccccgtcgtgccggagctgccgaagcccgaggtgcctcaccct 24417015 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagcct 253 ||||||||||| |||| |||| || |||||||||||| |||| |||||||| ||||| Sbjct: 24417212 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagccc 24417153 Query: 254 gagctgccacaccct 268 ||| |||| |||||| Sbjct: 24417152 gaggtgcctcaccct 24417138 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 |||||||| || ||||| || || ||||||||||||||| |||| |||||||| |||| Sbjct: 24417350 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 24417293 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||||||| ||||| ||| |||||||||||||| Sbjct: 24419667 gccacaccccgtcgtgccggagttgccaaagcacgaa 24419631 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctg 335 ||||||||||| ||||| ||| |||| ||||||||| |||||||||||||| Sbjct: 24419364 gccacaccccgccgtgccggagctgcctaagcacgaagagccgccgcaccctg 24419312 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 84 tcttcctcgtggcgctgctactcttgtgcagctccat 120 ||||||||||||||||||| |||| ||||||| |||| Sbjct: 24417442 tcttcctcgtggcgctgctgctctcgtgcagcaccat 24417406 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 224 caccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 ||||||||| |||| ||| |||| ||||||||| ||||||||||| Sbjct: 24416978 caccccgtcgtgccggagttgccaaagcctgaggtgccacaccct 24416934 Score = 46.1 bits (23), Expect = 0.094 Identities = 65/79 (82%) Strand = Plus / Minus Query: 282 tgccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgctatgc 341 |||||||||||| |||||| || |||| |||| ||| |||| ||||||||| ||| Sbjct: 24428056 tgccacaccccgaggtgccggaattgccgaagcctgaattgcctgagcaccctgcggtgc 24427997 Query: 342 ccgagctcccgaagcctga 360 | ||||||||||||||||| Sbjct: 24427996 cggagctcccgaagcctga 24427978 Score = 44.1 bits (22), Expect = 0.37 Identities = 54/64 (84%), Gaps = 3/64 (4%) Strand = Plus / Minus Query: 61 caagaacaccatgtcctcc---cttgtcttcctcgtggcgctgctactcttgtgcagctc 117 ||||||| ||||||||||| ||| |||||||| |||||||||| |||| || ||||| Sbjct: 24428280 caagaactccatgtcctcctcgcttctcttcctcatggcgctgctgctctcatggagctc 24428221 Query: 118 catc 121 |||| Sbjct: 24428220 catc 24428217 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Minus Query: 291 ccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgc 336 |||| ||||| ||| |||| ||||||||| ||||||||||||||| Sbjct: 24419614 ccgtcgtgccggagttgcccaagcacgaagagccgccgcaccctgc 24419569 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 24419348 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 24419291 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 tgcccgagctgccgaagcctgagctgcca 262 |||| ||||| |||||||||||||||||| Sbjct: 24427999 tgccggagctcccgaagcctgagctgcca 24427971 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 287 caccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||| ||||| ||| |||||||||||||| Sbjct: 24417320 caccccgtcgtgccggagctgccaaagcacgaa 24417288 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 tcgtcccggagctgccaaagcccga 213 |||| |||||||||||||||||||| Sbjct: 24417175 tcgtgccggagctgccaaagcccga 24417151 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccga 213 |||||||||||||||||||| Sbjct: 24428123 ccggagctgccaaagcccga 24428104 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 283 gccacaccccgtggtgcccgaggtgccaaagc 314 |||||||||||| ||||| ||| ||||||||| Sbjct: 24419445 gccacaccccgtcgtgccggagctgccaaagc 24419414 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 222 cgcaccccgtcatgcccgagctgccgaagcctgagctgcc 261 ||||||||| | |||| ||||| || |||||||||||||| Sbjct: 24417364 cgcaccccgccgtgccggagcttcccaagcctgagctgcc 24417325 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 220 gccgcaccccgtcatgcccgagctgccg 247 ||||||||||||| |||| ||||||||| Sbjct: 24413429 gccgcaccccgtcgtgccggagctgccg 24413402
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 189 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccga 248 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| Sbjct: 45178 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 45119 Query: 249 agcctga 255 ||||||| Sbjct: 45118 agcctga 45112 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 221 ccgcaccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 |||||||||||| |||| |||||||||||||| ||| |||| |||||| Sbjct: 42929 ccgcaccccgtcgtgccggagctgccgaagcccgaggtgcctcaccct 42882 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagcct 253 ||||||||||| |||| |||| || |||||||||||| |||| |||||||| ||||| Sbjct: 43079 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagccc 43020 Query: 254 gagctgccacaccct 268 ||| |||| |||||| Sbjct: 43019 gaggtgcctcaccct 43005 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 |||||||| || ||||| || || ||||||||||||||| |||| |||||||| |||| Sbjct: 43217 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 43160 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||||||| ||||| ||| |||||||||||||| Sbjct: 45534 gccacaccccgtcgtgccggagttgccaaagcacgaa 45498 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctg 335 ||||||||||| ||||| ||| |||| ||||||||| |||||||||||||| Sbjct: 45231 gccacaccccgccgtgccggagctgcctaagcacgaagagccgccgcaccctg 45179 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 84 tcttcctcgtggcgctgctactcttgtgcagctccat 120 ||||||||||||||||||| |||| ||||||| |||| Sbjct: 43309 tcttcctcgtggcgctgctgctctcgtgcagcaccat 43273 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 224 caccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 ||||||||| |||| ||| |||| ||||||||| ||||||||||| Sbjct: 42845 caccccgtcgtgccggagttgccaaagcctgaggtgccacaccct 42801 Score = 46.1 bits (23), Expect = 0.094 Identities = 65/79 (82%) Strand = Plus / Minus Query: 282 tgccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgctatgc 341 |||||||||||| |||||| || |||| |||| ||| |||| ||||||||| ||| Sbjct: 53923 tgccacaccccgaggtgccggaattgccgaagcctgaattgcctgagcaccctgcggtgc 53864 Query: 342 ccgagctcccgaagcctga 360 | ||||||||||||||||| Sbjct: 53863 cggagctcccgaagcctga 53845 Score = 44.1 bits (22), Expect = 0.37 Identities = 54/64 (84%), Gaps = 3/64 (4%) Strand = Plus / Minus Query: 61 caagaacaccatgtcctcc---cttgtcttcctcgtggcgctgctactcttgtgcagctc 117 ||||||| ||||||||||| ||| |||||||| |||||||||| |||| || ||||| Sbjct: 54147 caagaactccatgtcctcctcgcttctcttcctcatggcgctgctgctctcatggagctc 54088 Query: 118 catc 121 |||| Sbjct: 54087 catc 54084 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Minus Query: 291 ccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgc 336 |||| ||||| ||| |||| ||||||||| ||||||||||||||| Sbjct: 45481 ccgtcgtgccggagttgcccaagcacgaagagccgccgcaccctgc 45436 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 45215 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 45158 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 234 tgcccgagctgccgaagcctgagctgcca 262 |||| ||||| |||||||||||||||||| Sbjct: 53866 tgccggagctcccgaagcctgagctgcca 53838 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 287 caccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||| ||||| ||| |||||||||||||| Sbjct: 43187 caccccgtcgtgccggagctgccaaagcacgaa 43155 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 tcgtcccggagctgccaaagcccga 213 |||| |||||||||||||||||||| Sbjct: 43042 tcgtgccggagctgccaaagcccga 43018 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccga 213 |||||||||||||||||||| Sbjct: 53990 ccggagctgccaaagcccga 53971 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 283 gccacaccccgtggtgcccgaggtgccaaagc 314 |||||||||||| ||||| ||| ||||||||| Sbjct: 45312 gccacaccccgtcgtgccggagctgccaaagc 45281 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Minus Query: 222 cgcaccccgtcatgcccgagctgccgaagcctgagctgcc 261 ||||||||| | |||| ||||| || |||||||||||||| Sbjct: 43231 cgcaccccgccgtgccggagcttcccaagcctgagctgcc 43192 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 220 gccgcaccccgtcatgcccgagctgccg 247 ||||||||||||| |||| ||||||||| Sbjct: 39296 gccgcaccccgtcgtgccggagctgccg 39269
>dbj|AK106214.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G11, full insert sequence Length = 1071 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccga 248 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748 Query: 249 agcctga 255 ||||||| Sbjct: 749 agcctga 755 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctg 335 ||||||||||| ||||| ||| |||| ||||||||| |||||||||||||| Sbjct: 636 gccacaccccgccgtgccggagctgcctaagcacgaagagccgccgcaccctg 688 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||||||| ||||| ||| |||||||||||||| Sbjct: 333 gccacaccccgtcgtgccggagttgccaaagcacgaa 369 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 291 ccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgc 336 |||| ||||| ||| |||| ||||||||| ||||||||||||||| Sbjct: 386 ccgtcgtgccggagttgcccaagcacgaagagccgccgcaccctgc 431 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagc 314 |||||||||||| ||||| ||| ||||||||| Sbjct: 555 gccacaccccgtcgtgccggagctgccaaagc 586
>dbj|AK105918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H12, full insert sequence Length = 1071 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccga 248 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| Sbjct: 689 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 748 Query: 249 agcctga 255 ||||||| Sbjct: 749 agcctga 755 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctg 335 ||||||||||| ||||| ||| |||| ||||||||| |||||||||||||| Sbjct: 636 gccacaccccgccgtgccggagctgcctaagcacgaagagccgccgcaccctg 688 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||||||| ||||| ||| |||||||||||||| Sbjct: 333 gccacaccccgtcgtgccggagttgccaaagcacgaa 369 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 ||||||||||| |||| |||| ||||||||||| ||| |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 291 ccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgc 336 |||| ||||| ||| |||| ||||||||| ||||||||||||||| Sbjct: 386 ccgtcgtgccggagttgcccaagcacgaagagccgccgcaccctgc 431 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagc 314 |||||||||||| ||||| ||| ||||||||| Sbjct: 555 gccacaccccgtcgtgccggagctgccaaagc 586
>dbj|AK070771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L14, full insert sequence Length = 988 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccga 248 |||| ||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| Sbjct: 684 tcgtgccggagctgcccaagcacgaggagccgccgcaccccgtcgtgccggagctgccga 743 Query: 249 agcctga 255 ||||||| Sbjct: 744 agcctga 750 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||||||| ||||| ||| |||||||||||||| Sbjct: 334 gccacaccccgtcgtgccggagttgccaaagcacgaa 370 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 291 ccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgc 336 |||| ||||| ||| |||| ||||||||| ||||||||||||||| Sbjct: 387 ccgtcgtgccggagttgcccaagcacgaagagccgccgcaccctgc 432 Score = 42.1 bits (21), Expect = 1.5 Identities = 46/53 (86%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctg 335 ||||||||||| ||||| ||| |||||| ||||||| |||||||||||||| Sbjct: 632 gccacaccccgccgtgccggagctgccaa-gcacgaagagccgccgcaccctg 683 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 gccacaccccgtggtgcccgaggtgccaaagc 314 |||||||||||| ||||| ||| ||||||||| Sbjct: 551 gccacaccccgtcgtgccggagctgccaaagc 582
>gb|AY112347.1| Zea mays CL32321_1 mRNA sequence Length = 636 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagcct 253 ||||||||||| ||||||||||| || || ||||| ||| |||| ||||| || |||||| Sbjct: 434 ccggagctgcccaagcccgaactgcctcctcacccggtcgtgccagagcttccaaagcct 375 Query: 254 gagctgccacaccc 267 ||| |||| ||||| Sbjct: 374 gaggtgcctcaccc 361 Score = 54.0 bits (27), Expect = 4e-04 Identities = 65/77 (84%), Gaps = 3/77 (3%) Strand = Plus / Minus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgt---catgcccgagctgccgaag 250 ||||||||||| |||||||| || | ||||||||| | | ||||||||||||||||| Sbjct: 596 ccggagctgcccaagcccgagctgcagccgcacccggcggccgtgcccgagctgccgaag 537 Query: 251 cctgagctgccacaccc 267 |||||| |||| ||||| Sbjct: 536 cctgaggtgccgcaccc 520 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 197 gagctgccaaagcccgaactcccgccgcaccc 228 |||||||||||||| |||||||| || ||||| Sbjct: 350 gagctgccaaagcctgaactccctcctcaccc 319
>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112 mRNA Length = 1006 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 221 ccgcaccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 |||||||||||| |||| |||||||||||||| ||| |||| |||||| Sbjct: 474 ccgcaccccgtcgtgccggagctgccgaagcccgaggtgcctcaccct 521 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagcct 253 ||||||||||| |||| |||| || |||||||||||| |||| |||||||| ||||| Sbjct: 324 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagccc 383 Query: 254 gagctgccacaccct 268 ||| |||| |||||| Sbjct: 384 gaggtgcctcaccct 398 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 |||||||| || ||||| || || ||||||||||||||| |||| |||||||| |||| Sbjct: 186 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 243 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 224 caccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 ||||||||| |||| ||| |||| ||||||||| ||||||||||| Sbjct: 558 caccccgtcgtgccggagttgccaaagcctgaggtgccacaccct 602 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 84 tcttcctcgtggcgctgctactcttgtgcagctccat 120 ||||||||||||||||||| |||| ||||||| |||| Sbjct: 94 tcttcctcgtggcgctgctgctctcgtgcagcaccat 130 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccga 213 |||| |||||||||||||||||||| Sbjct: 361 tcgtgccggagctgccaaagcccga 385 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 287 caccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||| ||||| ||| |||||||||||||| Sbjct: 216 caccccgtcgtgccggagctgccaaagcacgaa 248 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 222 cgcaccccgtcatgcccgagctgccgaagcctgagctgcc 261 ||||||||| | |||| ||||| || |||||||||||||| Sbjct: 172 cgcaccccgccgtgccggagcttcccaagcctgagctgcc 211
>ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1005 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 221 ccgcaccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 |||||||||||| |||| |||||||||||||| ||| |||| |||||| Sbjct: 471 ccgcaccccgtcgtgccggagctgccgaagcccgaggtgcctcaccct 518 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagcct 253 ||||||||||| |||| |||| || |||||||||||| |||| |||||||| ||||| Sbjct: 321 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagccc 380 Query: 254 gagctgccacaccct 268 ||| |||| |||||| Sbjct: 381 gaggtgcctcaccct 395 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 |||||||| || ||||| || || ||||||||||||||| |||| |||||||| |||| Sbjct: 183 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 240 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 224 caccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 ||||||||| |||| ||| |||| ||||||||| ||||||||||| Sbjct: 555 caccccgtcgtgccggagttgccaaagcctgaggtgccacaccct 599 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 84 tcttcctcgtggcgctgctactcttgtgcagctccat 120 ||||||||||||||||||| |||| ||||||| |||| Sbjct: 91 tcttcctcgtggcgctgctgctctcgtgcagcaccat 127 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccga 213 |||| |||||||||||||||||||| Sbjct: 358 tcgtgccggagctgccaaagcccga 382 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 287 caccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||| ||||| ||| |||||||||||||| Sbjct: 213 caccccgtcgtgccggagctgccaaagcacgaa 245 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 222 cgcaccccgtcatgcccgagctgccgaagcctgagctgcc 261 ||||||||| | |||| ||||| || |||||||||||||| Sbjct: 169 cgcaccccgccgtgccggagcttcccaagcctgagctgcc 208
>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full insert sequence Length = 1005 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 221 ccgcaccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 |||||||||||| |||| |||||||||||||| ||| |||| |||||| Sbjct: 471 ccgcaccccgtcgtgccggagctgccgaagcccgaggtgcctcaccct 518 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagcct 253 ||||||||||| |||| |||| || |||||||||||| |||| |||||||| ||||| Sbjct: 321 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagccc 380 Query: 254 gagctgccacaccct 268 ||| |||| |||||| Sbjct: 381 gaggtgcctcaccct 395 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 |||||||| || ||||| || || ||||||||||||||| |||| |||||||| |||| Sbjct: 183 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 240 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 224 caccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 ||||||||| |||| ||| |||| ||||||||| ||||||||||| Sbjct: 555 caccccgtcgtgccggagttgccaaagcctgaggtgccacaccct 599 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 84 tcttcctcgtggcgctgctactcttgtgcagctccat 120 ||||||||||||||||||| |||| ||||||| |||| Sbjct: 91 tcttcctcgtggcgctgctgctctcgtgcagcaccat 127 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccga 213 |||| |||||||||||||||||||| Sbjct: 358 tcgtgccggagctgccaaagcccga 382 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 287 caccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||| ||||| ||| |||||||||||||| Sbjct: 213 caccccgtcgtgccggagctgccaaagcacgaa 245 Score = 40.1 bits (20), Expect = 5.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 222 cgcaccccgtcatgcccgagctgccgaagcctgagctgcc 261 ||||||||| | |||| ||||| || |||||||||||||| Sbjct: 169 cgcaccccgccgtgccggagcttcccaagcctgagctgcc 208
>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full insert sequence Length = 1006 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 221 ccgcaccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 |||||||||||| |||| |||||||||||||| ||| |||| |||||| Sbjct: 474 ccgcaccccgtcgtgccggagctgccgaagcccgaggtgcctcaccct 521 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagcct 253 ||||||||||| |||| |||| || |||||||||||| |||| |||||||| ||||| Sbjct: 324 ccggagctgcccaagcacgaagagccaccgcaccccgtcgtgccggagctgccaaagccc 383 Query: 254 gagctgccacaccct 268 ||| |||| |||||| Sbjct: 384 gaggtgcctcaccct 398 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccgaactcccgccgcaccccgtcatgcccgagctgccgaagc 251 |||||||| || ||||| || || ||||||||||||||| |||| |||||||| |||| Sbjct: 186 ccggagcttcccaagcctgagctgccgccgcaccccgtcgtgccggagctgccaaagc 243 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 224 caccccgtcatgcccgagctgccgaagcctgagctgccacaccct 268 ||||||||| |||| ||| |||| ||||||||| ||||||||||| Sbjct: 558 caccccgtcgtgccggagttgccaaagcctgaggtgccacaccct 602 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 84 tcttcctcgtggcgctgctactcttgtgcagctccat 120 ||||||||||||||||||| |||| ||||||| |||| Sbjct: 94 tcttcctcgtggcgctgctgctctcgtgcagcaccat 130 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 222 cgcaccccgtcatgcccgagctgccgaagcctgagctgcc 261 ||||||||| |||||| ||||| || |||||||||||||| Sbjct: 172 cgcaccccgccatgccggagcttcccaagcctgagctgcc 211 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 tcgtcccggagctgccaaagcccga 213 |||| |||||||||||||||||||| Sbjct: 361 tcgtgccggagctgccaaagcccga 385 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 287 caccccgtggtgcccgaggtgccaaagcacgaa 319 |||||||| ||||| ||| |||||||||||||| Sbjct: 216 caccccgtcgtgccggagctgccaaagcacgaa 248
>ref|XM_479036.1| Oryza sativa (japonica cultivar-group), mRNA Length = 678 Score = 46.1 bits (23), Expect = 0.094 Identities = 65/79 (82%) Strand = Plus / Plus Query: 282 tgccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgctatgc 341 |||||||||||| |||||| || |||| |||| ||| |||| ||||||||| ||| Sbjct: 302 tgccacaccccgaggtgccggaattgccgaagcctgaattgcctgagcaccctgcggtgc 361 Query: 342 ccgagctcccgaagcctga 360 | ||||||||||||||||| Sbjct: 362 cggagctcccgaagcctga 380 Score = 44.1 bits (22), Expect = 0.37 Identities = 54/64 (84%), Gaps = 3/64 (4%) Strand = Plus / Plus Query: 61 caagaacaccatgtcctcc---cttgtcttcctcgtggcgctgctactcttgtgcagctc 117 ||||||| ||||||||||| ||| |||||||| |||||||||| |||| || ||||| Sbjct: 78 caagaactccatgtcctcctcgcttctcttcctcatggcgctgctgctctcatggagctc 137 Query: 118 catc 121 |||| Sbjct: 138 catc 141 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 234 tgcccgagctgccgaagcctgagctgcca 262 |||| ||||| |||||||||||||||||| Sbjct: 359 tgccggagctcccgaagcctgagctgcca 387 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccga 213 |||||||||||||||||||| Sbjct: 235 ccggagctgccaaagcccga 254
>dbj|AK062673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G06, full insert sequence Length = 678 Score = 46.1 bits (23), Expect = 0.094 Identities = 65/79 (82%) Strand = Plus / Plus Query: 282 tgccacaccccgtggtgcccgaggtgccaaagcacgaactgccgccgcaccctgctatgc 341 |||||||||||| |||||| || |||| |||| ||| |||| ||||||||| ||| Sbjct: 302 tgccacaccccgaggtgccggaattgccgaagcctgaattgcctgagcaccctgcggtgc 361 Query: 342 ccgagctcccgaagcctga 360 | ||||||||||||||||| Sbjct: 362 cggagctcccgaagcctga 380 Score = 44.1 bits (22), Expect = 0.37 Identities = 54/64 (84%), Gaps = 3/64 (4%) Strand = Plus / Plus Query: 61 caagaacaccatgtcctcc---cttgtcttcctcgtggcgctgctactcttgtgcagctc 117 ||||||| ||||||||||| ||| |||||||| |||||||||| |||| || ||||| Sbjct: 78 caagaactccatgtcctcctcgcttctcttcctcatggcgctgctgctctcatggagctc 137 Query: 118 catc 121 |||| Sbjct: 138 catc 141 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 234 tgcccgagctgccgaagcctgagctgcca 262 |||| ||||| |||||||||||||||||| Sbjct: 359 tgccggagctcccgaagcctgagctgcca 387 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ccggagctgccaaagcccga 213 |||||||||||||||||||| Sbjct: 235 ccggagctgccaaagcccga 254
>ref|XM_514903.1| PREDICTED: Pan troglodytes Down syndrome cell adhesion molecule (LOC458559), mRNA Length = 7083 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 gccagtgccacaccccgtggt 426 ||||||||||||||||||||| Sbjct: 91 gccagtgccacaccccgtggt 111
>gb|BC081555.1| Danio rerio zgc:86648, mRNA (cDNA clone MGC:86648 IMAGE:6893873), complete cds Length = 1488 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 gctgctactcttgtgcagctc 117 ||||||||||||||||||||| Sbjct: 1365 gctgctactcttgtgcagctc 1385
>emb|AL163282.2|HS21C082 Homo sapiens chromosome 21 segment HS21C082 Length = 340000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gccagtgccacaccccgtggt 426 ||||||||||||||||||||| Sbjct: 206480 gccagtgccacaccccgtggt 206460
>emb|BX927313.11| Zebrafish DNA sequence from clone CH211-12A1 in linkage group 18, complete sequence Length = 189797 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 gctgctactcttgtgcagctc 117 ||||||||||||||||||||| Sbjct: 26404 gctgctactcttgtgcagctc 26424
>ref|NM_001004608.1| Danio rerio zgc:86648 (zgc:86648), mRNA Length = 1488 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 gctgctactcttgtgcagctc 117 ||||||||||||||||||||| Sbjct: 1365 gctgctactcttgtgcagctc 1385
>dbj|BS000158.1| Pan troglodytes chromosome 22 clone:PTB-042G18, map 22, complete sequences Length = 190319 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gccagtgccacaccccgtggt 426 ||||||||||||||||||||| Sbjct: 40360 gccagtgccacaccccgtggt 40340
>emb|AL954234.1|PTB080A15 Pan troglodytes chromosome 22 BAC PTB-080A15, complete sequence Length = 175584 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gccagtgccacaccccgtggt 426 ||||||||||||||||||||| Sbjct: 29737 gccagtgccacaccccgtggt 29717
>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7 Length = 346683 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 134 gcagcacgacacctagaggaggctgttcccaag 166 |||||| ||| ||||||||||||||||| |||| Sbjct: 124178 gcagcaagacgcctagaggaggctgttcgcaag 124146
>gb|AF042090.1|AF042090 Homo sapiens chromosome 21q22.3 PAC 171F15, complete sequence Length = 155407 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gccagtgccacaccccgtggt 426 ||||||||||||||||||||| Sbjct: 44697 gccagtgccacaccccgtggt 44677
>ref|NM_188401.1| Oryza sativa (japonica cultivar-group), Ozsa8127 predicted mRNA Length = 1707 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aagcacgaactgccgccgca 330 |||||||||||||||||||| Sbjct: 1460 aagcacgaactgccgccgca 1479
>ref|NM_189106.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1874 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gaggtggcaaaggagcctga 402 |||||||||||||||||||| Sbjct: 1529 gaggtggcaaaggagcctga 1510
>ref|XM_507140.1| PREDICTED Oryza sativa (japonica cultivar-group), P0577B11.136 mRNA Length = 1953 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gaggtggcaaaggagcctga 402 |||||||||||||||||||| Sbjct: 1603 gaggtggcaaaggagcctga 1584
>ref|XM_479030.1| Oryza sativa (japonica cultivar-group), mRNA Length = 680 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 220 gccgcaccccgtcatgcccgagctgccg 247 ||||||||||||| |||| ||||||||| Sbjct: 377 gccgcaccccgtcgtgccggagctgccg 404
>gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, complete sequence Length = 138419 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tgtcctcccttgtcttcctc 91 |||||||||||||||||||| Sbjct: 132235 tgtcctcccttgtcttcctc 132254
>ref|XM_865092.1| PREDICTED: Bos taurus similar to Retinoblastoma-binding protein 9 (RBBP-9) (B5T overexpressed gene protein) (Bog protein), transcript variant 3 (LOC513835), mRNA Length = 2345 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 gtgcagctccatctccatga 128 |||||||||||||||||||| Sbjct: 192 gtgcagctccatctccatga 173
>ref|XM_591584.2| PREDICTED: Bos taurus similar to Retinoblastoma-binding protein 9 (RBBP-9) (B5T overexpressed gene protein) (Bog protein), transcript variant 1 (LOC513835), mRNA Length = 1187 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 gtgcagctccatctccatga 128 |||||||||||||||||||| Sbjct: 195 gtgcagctccatctccatga 176
>gb|AC122898.4| Mus musculus BAC clone RP23-71K9 from 1, complete sequence Length = 230945 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 tgtcctcccttgtcttcctc 91 |||||||||||||||||||| Sbjct: 129711 tgtcctcccttgtcttcctc 129692
>emb|AL356748.20| Human DNA sequence from clone RP4-686J16 on chromosome 1 Contains the 5' end of the IGSF3 gene for immunoglobulin superfamily member 3, a novel gene, a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene and a CpG island, complete sequence Length = 97559 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 7269 gaggtggccaaggagcctgaagtg 7292
>emb|AL354831.18| Human DNA sequence from clone RP11-188A23 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 144586 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 agcctgagctgccacaccct 268 |||||||||||||||||||| Sbjct: 110265 agcctgagctgccacaccct 110284
>gb|AC008620.12| Homo sapiens chromosome 5 clone CTB-14A14, complete sequence Length = 124713 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gctgccacaccctctcgtcc 275 |||||||||||||||||||| Sbjct: 46414 gctgccacaccctctcgtcc 46433
>gb|AC093573.17| Pan troglodytes clone rp43-32j20, complete sequence Length = 170502 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 51121 gaggtggccaaggagcctgaagtg 51144
>gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, complete sequence Length = 138416 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 catgtcctcccttgtcttcc 89 |||||||||||||||||||| Sbjct: 112821 catgtcctcccttgtcttcc 112840
>gb|AC008132.35| Homo sapiens chromosome 22 clone pac995o6 map 22q11, complete sequence Length = 145598 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 98388 gaggtggccaaggagcctgaagtg 98411
>gb|AC009288.15| Homo sapiens chromosome 22 clone p413m7 map 22q11, complete sequence Length = 140876 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 13409 gaggtggccaaggagcctgaagtg 13432
>gb|AC023491.23| Homo sapiens chromosome 22 clone b659m11 map 22q11, complete sequence Length = 150754 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 53030 gaggtggccaaggagcctgaagtg 53007
>gb|AC007708.13| Homo sapiens chromosome 22 clone b563b9 map 22q11, complete sequence Length = 106650 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 15387 gaggtggccaaggagcctgaagtg 15410
>gb|AC008018.20| Homo sapiens chromosome 22 clone b379n11 map 22q11, complete sequence Length = 180884 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 161356 gaggtggccaaggagcctgaagtg 161379
>gb|AC007981.47| Homo sapiens chromosome 22 clone b291 map 22q11, complete sequence Length = 175358 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 93706 gaggtggccaaggagcctgaagtg 93729
>gb|AC012330.10| Homo sapiens clone b2262a2, complete sequence Length = 105288 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 57751 gaggtggccaaggagcctgaagtg 57728
>gb|AC005815.1| Homo sapiens chromosome 22 clone 239d10 map 22q11, complete sequence Length = 183085 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 97998 gaggtggccaaggagcctgaagtg 98021
>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence Length = 190701 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 catgtcctcccttgtcttcc 89 |||||||||||||||||||| Sbjct: 188611 catgtcctcccttgtcttcc 188592
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctga 402 |||||||||||||||||||| Sbjct: 3680063 gaggtggcaaaggagcctga 3680082
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aagcacgaactgccgccgca 330 |||||||||||||||||||| Sbjct: 6072655 aagcacgaactgccgccgca 6072674
>gb|AC008443.10| Homo sapiens chromosome 5 clone CTC-338M12, complete sequence Length = 120515 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 gctgccacaccctctcgtcc 275 |||||||||||||||||||| Sbjct: 3644 gctgccacaccctctcgtcc 3625
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctga 402 |||||||||||||||||||| Sbjct: 3560 gaggtggcaaaggagcctga 3579
>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466B10 Length = 151806 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aagcacgaactgccgccgca 330 |||||||||||||||||||| Sbjct: 140543 aagcacgaactgccgccgca 140562
>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031E09 Length = 176349 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aagcacgaactgccgccgca 330 |||||||||||||||||||| Sbjct: 97012 aagcacgaactgccgccgca 97031
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctga 402 |||||||||||||||||||| Sbjct: 158569 gaggtggcaaaggagcctga 158588
>dbj|AK107490.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D01, full insert sequence Length = 680 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 220 gccgcaccccgtcatgcccgagctgccg 247 ||||||||||||| |||| ||||||||| Sbjct: 377 gccgcaccccgtcgtgccggagctgccg 404
>dbj|AK102462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094D12, full insert sequence Length = 1874 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gaggtggcaaaggagcctga 402 |||||||||||||||||||| Sbjct: 1529 gaggtggcaaaggagcctga 1510
>dbj|AK067263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096G17, full insert sequence Length = 2524 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctga 402 |||||||||||||||||||| Sbjct: 701 gaggtggcaaaggagcctga 720
>dbj|AK063453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G04, full insert sequence Length = 1952 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gaggtggcaaaggagcctga 402 |||||||||||||||||||| Sbjct: 1602 gaggtggcaaaggagcctga 1583
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gaacaccatgctgcgcaaga 65 |||||||||||||||||||| Sbjct: 3915540 gaacaccatgctgcgcaaga 3915559
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 catgcccgagctgccgaagc 251 |||||||||||||||||||| Sbjct: 1025909 catgcccgagctgccgaagc 1025928
>dbj|AP000550.1| Homo sapiens genomic DNA, chromosome 22q11.2, BCRL2 region, clone:KB1592A4 Length = 150724 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gaggtggcaaaggagcctgaagtg 406 |||||||| ||||||||||||||| Sbjct: 143435 gaggtggccaaggagcctgaagtg 143458 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,621,947 Number of Sequences: 3902068 Number of extensions: 2621947 Number of successful extensions: 58105 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57570 Number of HSP's gapped (non-prelim): 523 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
