ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59c02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA, complete cds Length = 2887 Score = 410 bits (207), Expect = e-111 Identities = 249/263 (94%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccgcctccggctccggcgacttcctccgcccg 209 Query: 282 cacggcggcggcgcctccggcgtctccaggattggtgacttgcattttgagacacgtgag 341 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 210 cacggcggcggcgcctccggcgtctccaggattggtgacttgcattctgagtcacgtgag 269 Query: 342 cgtattcgttattcaagagatcaacttcttgacctgcgaaagattaccgatatatccgag 401 ||| |||||||||||||||||||||||||||||||||| |||||||| ||| || ||||| Sbjct: 270 cgtgttcgttattcaagagatcaacttcttgacctgcgcaagattactgatgtaaccgag 329 Query: 402 caaatcttgaggcttcagcaggaaattgaagcagagcttcatggtgacgatcagagctgg 461 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct: 330 caaatcttgaggcttcagcaagaaattgaagcagagcttaatggtgacgatcagagctgg 389 Query: 462 gttcgcaacgattcgaatttgca 484 |||||||||||||| ||| |||| Sbjct: 390 gttcgcaacgattcaaatgtgca 412 Score = 184 bits (93), Expect = 2e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 73 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 132 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 133 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 189 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA sequence Length = 2863 Score = 335 bits (169), Expect = 8e-89 Identities = 244/264 (92%), Gaps = 5/264 (1%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 150 cgcctcttcgcccccgccttcgcggtcgccgcctccggctccggcgacttcctccgcccg 209 Query: 282 cacggcggcggcgcct-ccggcgtctccaggattggtgacttgcattttgagacacgtga 340 |||||||||||||||| |||| ||||||||||||||| ||||||| | ||| |||| | Sbjct: 210 cacggcggcggcgccttccgggctctccaggattggtg-cttgcatct-gagtcacg--a 265 Query: 341 gcgtattcgttattcaagagatcaacttcttgacctgcgaaagattaccgatatatccga 400 |||| |||||||||||||||||||||||||||||||||| |||||||| ||| | |||| Sbjct: 266 gcgtgttcgttattcaagagatcaacttcttgacctgcgcaagattactgatgtgaccga 325 Query: 401 gcaaatcttgaggcttcagcaggaaattgaagcagagcttcatggtgacgatcagagctg 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 gcaaatcttgaggcttcagcaggaaattgaagcagagcttcatggtgacgatcagagctg 385 Query: 461 ggttcgcaacgattcgaatttgca 484 ||||||||||||||| ||| |||| Sbjct: 386 ggttcgcaacgattcaaatgtgca 409 Score = 184 bits (93), Expect = 2e-43 Identities = 111/117 (94%) Strand = Plus / Plus Query: 73 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 132 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 133 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 189 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgcc 117
>ref|XM_473052.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2382 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 70 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 129 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 130 cacgtcggcggcgc 143 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 178 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 218
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 47821 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 47762 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 47761 cacgtcggcggcgc 47748 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 47039 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 46999
>gb|AY224450.1| Oryza sativa (japonica cultivar-group) isolate 23225 eukaryotic initiation factor-like protein mRNA, complete cds Length = 2379 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 70 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 129 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 130 cacgtcggcggcgc 143 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 178 gagcgtgttcgctatacaagagatcaacttctcgagctgcg 218
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 24927236 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 24927177 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 24927176 cacgtcggcggcgc 24927163 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 24926454 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 24926414
>emb|AM156961.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5672 Length = 2558 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 243 cacgtcggcggcgc 256 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 291 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 331
>emb|AM156960.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5673 Length = 2533 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 243 cacgtcggcggcgc 256 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 291 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 331
>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Tog5681 Length = 2699 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 183 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 242 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 243 cacgtcggcggcgc 256 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 291 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 331
>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar Gigante Length = 2599 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 80 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 139 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 140 cacgtcggcggcgc 153 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 188 gagcgtgttcgctatacaagagatcaacttctcgagctgcg 228
>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic translation initiation factor 4 gamma (eif(iso)4g gene), cultivar IR64 Length = 2599 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 222 cgcctctttgcccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccg 281 |||||||| ||||||||||||||| || ||||||||||||||||||||| |||||| | Sbjct: 73 cgcctcttctcccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcc 132 Query: 282 cacggcggcggcgc 295 |||| ||||||||| Sbjct: 133 cacgtcggcggcgc 146 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 181 gagcgtgttcgctatacaagagatcaacttctcgagctgcg 221
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 79.8 bits (40), Expect = 8e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 232 cccccgccttcgccgtcgtcgcctccggctccggcgacttcctccgcccgcacggcggcg 291 ||||||||||||||| || ||||||||||||||||||||| |||||| | |||| ||||| Sbjct: 55312 cccccgccttcgccgccgccgcctccggctccggcgacttgctccgctcccacgtcggcg 55253 Query: 292 gcgc 295 |||| Sbjct: 55252 gcgc 55249 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 54548 gagcgtgttcgctatacaagagatcaacttctcgagctgcg 54508
>gb|AY109824.1| Zea mays CL533_1 mRNA sequence Length = 2894 Score = 71.9 bits (36), Expect = 2e-09 Identities = 123/152 (80%) Strand = Plus / Plus Query: 324 cattttgagacacgtgagcgtattcgttattcaagagatcaacttcttgacctgcgaaag 383 ||||||||| ||||||||||| |||| || |||||||||||||||| || ||||| || Sbjct: 323 cattttgagccacgtgagcgtgttcgatacacaagagatcaacttctcgagctgcgtgag 382 Query: 384 attaccgatatatccgagcaaatcttgaggcttcagcaggaaattgaagcagagcttcat 443 ||| ||| | || ||| |||| || || | |||| || ||||| | |||||||||| Sbjct: 383 attgttgatgtgtctgaggaaattttaagaatcaagcaagagattgatgtagagcttcat 442 Query: 444 ggtgacgatcagagctgggttcgcaacgattc 475 ||||| || ||||||||||||||||| ||||| Sbjct: 443 ggtgaagaccagagctgggttcgcaatgattc 474
>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full insert sequence Length = 2907 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 251 cgcctccggctccggcgacttcctccgcccgcacggcggcggcgc 295 ||||||||||||||||||||| |||||| | |||| ||||||||| Sbjct: 140 cgcctccggctccggcgacttgctccgctcccacgtcggcggcgc 184 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 339 gagcgtattcgttattcaagagatcaacttcttgacctgcg 379 |||||| |||| ||| |||||||||||||||| || ||||| Sbjct: 219 gagcgtgttcgctatacaagagatcaacttctcgaactgcg 259
>gb|AF345522.1| TT virus isolate TCHN-E Orf2 and Orf1 genes, complete cds Length = 3288 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 287 cggcggcgcctccggcgtctcca 309 ||||||||||||||||||||||| Sbjct: 547 cggcggcgcctccggcgtctcca 525
>gb|AF315076.1|AF315076 TTV-like virus DXL1 unknown genes Length = 3285 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 287 cggcggcgcctccggcgtctcca 309 ||||||||||||||||||||||| Sbjct: 541 cggcggcgcctccggcgtctcca 519
>dbj|AB158460.1| Streptomyces halstedii hlsA, hlsB, hlsC genes for type I polyketide synthase, type I polyketide synthase, type I polyketide synthase, complete and partial cds Length = 45102 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 278 cccgcacggcggcggcgcctccggcgt 304 |||||| |||||||||||||||||||| Sbjct: 43234 cccgcagggcggcggcgcctccggcgt 43208
>ref|XM_466679.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2486 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 266 cgacttcctccgcccgcacggcggcg 291 ||||||||||||||||| |||||||| Sbjct: 169 cgacttcctccgcccgcgcggcggcg 194
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 266 cgacttcctccgcccgcacggcggcg 291 ||||||||||||||||| |||||||| Sbjct: 24093957 cgacttcctccgcccgcgcggcggcg 24093932
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 cgtcgcctccggctccggcgac 269 |||||||||||||||||||||| Sbjct: 3280915 cgtcgcctccggctccggcgac 3280936
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Plus Query: 232 cccccgccttcgccgtcgtcgcctccggct 261 |||||||| |||||| |||||||||||||| Sbjct: 4846066 cccccgccctcgccgccgtcgcctccggct 4846095 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gcccccgccttcgccgtcgtcgcctccg 258 |||| |||||||||||||| |||||||| Sbjct: 7733336 gccctcgccttcgccgtcgccgcctccg 7733363
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 266 cgacttcctccgcccgcacggcggcg 291 ||||||||||||||||| |||||||| Sbjct: 52698 cgacttcctccgcccgcgcggcggcg 52673
>dbj|AK072083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118N03, full insert sequence Length = 3014 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 266 cgacttcctccgcccgcacggcggcg 291 ||||||||||||||||| |||||||| Sbjct: 169 cgacttcctccgcccgcgcggcggcg 194
>gb|AC152924.1| Tribolium castaneum BAC T.cast_C6F3 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 91275 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 463 ttcgcaacgattcgaatttgc 483 ||||||||||||||||||||| Sbjct: 60392 ttcgcaacgattcgaatttgc 60372
>ref|XM_483426.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cggcggcggcgcctccggcgt 304 ||||||||||||||||||||| Sbjct: 683 cggcggcggcgcctccggcgt 703
>ref|NM_183759.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1644 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 794 gcccgcacggcgccggcgccgccggcgtc 822
>gb|AY016020.1| Gallus gallus alpha globin gene cluster, complete sequence Length = 103190 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ctccgcccgcacggcggcggc 293 ||||||||||||||||||||| Sbjct: 101622 ctccgcccgcacggcggcggc 101602
>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence Length = 127686 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 acggcggcggcgcctccggcg 303 ||||||||||||||||||||| Sbjct: 41219 acggcggcggcgcctccggcg 41239
>tpg|BK000941.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M333, complete sequence Length = 14620 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 10383 gcccgcacggcgccggcgccgccggcgtc 10411
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 cgtcgtcgcctccggctccgg 265 ||||||||||||||||||||| Sbjct: 20832812 cgtcgtcgcctccggctccgg 20832792 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 gtcgcctccggctccggcgac 269 ||||||||||||||||||||| Sbjct: 4952840 gtcgcctccggctccggcgac 4952820
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cggcggcggcgcctccggcgt 304 ||||||||||||||||||||| Sbjct: 26154769 cggcggcggcgcctccggcgt 26154789 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 ttcgccgtcgtcgcctccggctccggcg 267 |||||||||| ||||||||||| ||||| Sbjct: 25924211 ttcgccgtcgccgcctccggctgcggcg 25924238
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 12075305 gcccgcacggcgccggcgccgccggcgtc 12075333 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 29716165 ccgcacggtggcggcgcctccggc 29716142
>gb|AC172304.2| Gallus gallus BAC clone CH261-75C12 from chromosome ul, complete sequence Length = 227366 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ctccgcccgcacggcggcggc 293 ||||||||||||||||||||| Sbjct: 38521 ctccgcccgcacggcggcggc 38541
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 42245 gcccgcacggcgccggcgccgccggcgtc 42273
>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028G04 Length = 159761 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 277 gcccgcacggcggcggcgcctccggcgtc 305 |||||||||||| ||||||| |||||||| Sbjct: 120969 gcccgcacggcgccggcgccgccggcgtc 120997
>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101075 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 cgtcgtcgcctccggctccgg 265 ||||||||||||||||||||| Sbjct: 34543 cgtcgtcgcctccggctccgg 34523
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cggcggcggcgcctccggcgt 304 ||||||||||||||||||||| Sbjct: 98700 cggcggcggcgcctccggcgt 98720
>dbj|AK107026.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-A07, full insert sequence Length = 1608 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 gtcgcctccggctccggcgac 269 ||||||||||||||||||||| Sbjct: 928 gtcgcctccggctccggcgac 948
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 tccgcccgcacggcggcggcgcctc 298 ||||||||||||||| ||||||||| Sbjct: 3929248 tccgcccgcacggcgccggcgcctc 3929272
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 cgtcgtcgcctccggctccgg 265 ||||||||||||||||||||| Sbjct: 20759026 cgtcgtcgcctccggctccgg 20759006 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 gtcgcctccggctccggcgac 269 ||||||||||||||||||||| Sbjct: 4952822 gtcgcctccggctccggcgac 4952802
>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 149022 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 cgtcgtcgcctccggctccgg 265 ||||||||||||||||||||| Sbjct: 130653 cgtcgtcgcctccggctccgg 130633
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 gtcgcctccggctccggcgac 269 ||||||||||||||||||||| Sbjct: 7119 gtcgcctccggctccggcgac 7139
>gb|DQ176871.1| Streptomyces aureofaciens strain Tu117 lipomycin biosynthesis gene cluster, complete sequence Length = 66871 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcccgcacggcggcggcgcc 296 |||||||||||||||||||| Sbjct: 17207 gcccgcacggcggcggcgcc 17188
>ref|XM_483376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2154 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 ttcgccgtcgtcgcctccggctccggcg 267 |||||||||| ||||||||||| ||||| Sbjct: 1859 ttcgccgtcgccgcctccggctgcggcg 1832
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 cgcccgcacggcggcggcgc 295 |||||||||||||||||||| Sbjct: 2776750 cgcccgcacggcggcggcgc 2776731
>ref|NM_191743.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 948 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 334 ccgcacggtggcggcgcctccggc 357
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cgccttcgccgtcgtcgcct 255 |||||||||||||||||||| Sbjct: 90719 cgccttcgccgtcgtcgcct 90700
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete sequence Length = 166888 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ccgccttcgccgtcgtcgcc 254 |||||||||||||||||||| Sbjct: 106575 ccgccttcgccgtcgtcgcc 106594
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ccgccttcgccgtcgtcgcc 254 |||||||||||||||||||| Sbjct: 33558505 ccgccttcgccgtcgtcgcc 33558486 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cttcctccgcccgcacggcg 288 |||||||||||||||||||| Sbjct: 31753705 cttcctccgcccgcacggcg 31753686 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cgccttcgccgtcgtcgcct 255 |||||||||||||||||||| Sbjct: 17368342 cgccttcgccgtcgtcgcct 17368323
>gb|AC129020.4| Mus musculus BAC clone RP23-234A5 from chromosome 16, complete sequence Length = 192668 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 351 tattcaagagatcaacttcttgac 374 |||||||||| ||||||||||||| Sbjct: 169402 tattcaagagctcaacttcttgac 169379
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence Length = 147107 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gacagaccagccagtgatca 180 |||||||||||||||||||| Sbjct: 15395 gacagaccagccagtgatca 15376
>gb|AC108850.3| Mus musculus chromosome 1, clone RP24-85N11, complete sequence Length = 194889 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 tgaagcagagcttcatggtg 447 |||||||||||||||||||| Sbjct: 70005 tgaagcagagcttcatggtg 70024
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cttcctccgcccgcacggcg 288 |||||||||||||||||||| Sbjct: 78931 cttcctccgcccgcacggcg 78912
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 cgtcgtcgcctccggctccggcga 268 |||||||| ||||||||||||||| Sbjct: 110862 cgtcgtcgtctccggctccggcga 110885
>emb|AJ518946.2|SSP518946 Sinorhizobium sp. BR816 nodulation gene cluster nodD1, nodE, nodF, nodA, nodB, nodC, nodS, nodU, nodI, nodJ, orf350, nodH, nodP2, nodQ2 genes and orf116, orf113 and orf352, strain BR816 Length = 18521 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 cgcctccggcgtctccaggattgg 316 ||||||| |||||||||||||||| Sbjct: 11586 cgcctccagcgtctccaggattgg 11563
>gb|AC109442.3| Homo sapiens chromosome 5 clone CTC-345B2, complete sequence Length = 71075 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 aaatcttgaggcttcagcag 422 |||||||||||||||||||| Sbjct: 43235 aaatcttgaggcttcagcag 43216
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gacagaccagccagtgatca 180 |||||||||||||||||||| Sbjct: 106152 gacagaccagccagtgatca 106133
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 cggcggcggcgcctccggcg 303 |||||||||||||||||||| Sbjct: 2486153 cggcggcggcgcctccggcg 2486134
>gb|AE005679.1| Caulobacter crescentus CB15 section 5 of 359 of the complete genome Length = 12370 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cccgcacggcggcggcgcct 297 |||||||||||||||||||| Sbjct: 5532 cccgcacggcggcggcgcct 5513
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggcggcggcgcctccggcgt 304 |||||||||||||||||||| Sbjct: 87682 ggcggcggcgcctccggcgt 87701
>tpg|BK005062.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 59 (WRKY59) gene, complete cds Length = 1422 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 127 ccgcacggtggcggcgcctccggc 150
>tpg|BK005029.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 26 (WRKY26) gene, complete cds Length = 1682 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 118 ccgcacggtggcggcgcctccggc 141
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 278 cccgcacggcggcggcgcctccggcgtc 305 ||||||||||||||||| | |||||||| Sbjct: 3333763 cccgcacggcggcggcggccccggcgtc 3333790
>gb|AC106752.3| Homo sapiens chromosome 5 clone RP11-166J22, complete sequence Length = 95926 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 aaatcttgaggcttcagcag 422 |||||||||||||||||||| Sbjct: 164 aaatcttgaggcttcagcag 145
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 cttcgccgtcgtcgcctccg 258 |||||||||||||||||||| Sbjct: 3189743 cttcgccgtcgtcgcctccg 3189762
>gb|AC125310.5| Mus musculus BAC clone RP24-548E5 from chromosome 1, complete sequence Length = 223534 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 tgaagcagagcttcatggtg 447 |||||||||||||||||||| Sbjct: 65721 tgaagcagagcttcatggtg 65702
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 cgtcgtcgcctccggctccggcga 268 |||||||| ||||||||||||||| Sbjct: 16549380 cgtcgtcgtctccggctccggcga 16549357
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ccgccttcgccgtcgtcgcc 254 |||||||||||||||||||| Sbjct: 33648977 ccgccttcgccgtcgtcgcc 33648958 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cttcctccgcccgcacggcg 288 |||||||||||||||||||| Sbjct: 31844221 cttcctccgcccgcacggcg 31844202 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cgccttcgccgtcgtcgcct 255 |||||||||||||||||||| Sbjct: 17361883 cgccttcgccgtcgtcgcct 17361864
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131B07 Length = 109135 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 45896 ccgcacggtggcggcgcctccggc 45873
>gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence Length = 149172 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 aaatcttgaggcttcagcag 422 |||||||||||||||||||| Sbjct: 102586 aaatcttgaggcttcagcag 102567
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 ccgtcgtcgcctccggctcc 263 |||||||||||||||||||| Sbjct: 3481323 ccgtcgtcgcctccggctcc 3481304
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 cttcgccgtcgtcgcctccg 258 |||||||||||||||||||| Sbjct: 7777440 cttcgccgtcgtcgcctccg 7777421 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ccgcccgcacggcggcggcg 294 |||||||||||||||||||| Sbjct: 6121974 ccgcccgcacggcggcggcg 6121955
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 gtcgtcgcctccggctccggcgacttcc 273 ||||||||||||||| |||| ||||||| Sbjct: 613186 gtcgtcgcctccggcaccggtgacttcc 613159
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 ttcgccgtcgtcgcctccggctccggcg 267 |||||||||| ||||||||||| ||||| Sbjct: 109998 ttcgccgtcgccgcctccggctgcggcg 110025
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 240 ttcgccgtcgtcgcctccggctccggcg 267 |||||||||| ||||||||||| ||||| Sbjct: 9088 ttcgccgtcgccgcctccggctgcggcg 9115
>dbj|AK121158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079L12, full insert sequence Length = 2595 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 240 ttcgccgtcgtcgcctccggctccggcg 267 |||||||||| ||||||||||| ||||| Sbjct: 2020 ttcgccgtcgccgcctccggctgcggcg 1993
>dbj|AK108555.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E10, full insert sequence Length = 1193 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 158 ccgcacggtggcggcgcctccggc 181
>dbj|AK103193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121P04, full insert sequence Length = 1748 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgccttcgccgtcgtcgcct 255 |||||||||||||||||||| Sbjct: 212 cgccttcgccgtcgtcgcct 231
>emb|AJ329702.1|HSA329702 Homo sapiens genomic sequence surrounding NotI site, clone NL1-UC14C Length = 572 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 tcagagctgggttcgcaacg 471 |||||||||||||||||||| Sbjct: 378 tcagagctgggttcgcaacg 359
>dbj|AK064680.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H07, full insert sequence Length = 1708 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 cgccttcgccgtcgtcgcct 255 |||||||||||||||||||| Sbjct: 181 cgccttcgccgtcgtcgcct 200
>dbj|AB059642.1| Perilla frutescens mRNA for putative regulatory protein in anthocyanin biosynthesis, complete cds Length = 1410 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctccggcgacttcctccgcc 279 |||||||||||||||||||| Sbjct: 317 ctccggcgacttcctccgcc 336
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cgcacggcggcggcgcctccggcg 303 |||||||||||||||| ||||||| Sbjct: 2746561 cgcacggcggcggcgcgtccggcg 2746584
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 cgtcgtcgcctccggctccggcga 268 |||||||| ||||||||||||||| Sbjct: 16557621 cgtcgtcgtctccggctccggcga 16557598
>gb|AY870609.1| Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds Length = 931 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ccgcacggcggcggcgcctccggc 302 |||||||| ||||||||||||||| Sbjct: 134 ccgcacggtggcggcgcctccggc 157
>gb|AC138328.3| Mus musculus BAC clone RP23-378F20 from 1, complete sequence Length = 153109 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 tgaagcagagcttcatggtg 447 |||||||||||||||||||| Sbjct: 146645 tgaagcagagcttcatggtg 146626
>emb|CT030646.6| Mouse DNA sequence from clone RP23-222A16 on chromosome 13, complete sequence Length = 195169 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 aaattgaagcagagcttcat 443 |||||||||||||||||||| Sbjct: 152872 aaattgaagcagagcttcat 152853
>gb|AC100561.13| Mus musculus chromosome 1, clone RP23-154C4, complete sequence Length = 207939 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 tgaagcagagcttcatggtg 447 |||||||||||||||||||| Sbjct: 29914 tgaagcagagcttcatggtg 29895 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,279,710 Number of Sequences: 3902068 Number of extensions: 3279710 Number of successful extensions: 64945 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62687 Number of HSP's gapped (non-prelim): 2256 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
