>ZDH12_RAT (Q6DGF5) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
          Length = 267

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 8   TSYPVTRPRRXCRLRHHASSSALRAPTRRXSHSACTWATTPART 139
           T++      R   LR   S+   R PTR  +H  C W + P  T
Sbjct: 210 TTWEFISSHRIAYLRQRTSNPFDRGPTRNLAHFFCGWPSGPWET 253

>ZDH12_MOUSE (Q8VC90) Probable palmitoyltransferase ZDHHC12 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 12) (DHHC-12)
          Length = 267

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 8   TSYPVTRPRRXCRLRHHASSSALRAPTRRXSHSACTWATTPART 139
           T++      R   LR   S+   R PTR  +H  C W + P  T
Sbjct: 210 TTWEFISSHRIAYLRQRTSNPFDRGPTRNLAHFFCGWPSGPWET 253

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
 Frame = +3

Query: 51  GTMPAPR-R*ERPRDGX-AIPRVRGLRLPRGHRIPRVPXXXXXXXXXXXGGHPDRPA-GA 221
           G   APR   + PR G     R +G+  P    IPR             GG P RP  G 
Sbjct: 175 GNASAPRPHAQGPRPGNNPFSRKQGMHTPTPGDIPRPHPMARPTADNGRGGRPGRPGQGQ 234

Query: 222 PRGRAVLAGARADGERG 272
            +GR    G    G +G
Sbjct: 235 GQGRGFRGGRPGQGGQG 251

>GUDP_ECOLI (Q46916) Probable glucarate transporter (D-glucarate permease)|
          Length = 450

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 147 VCDVLAGVVAHVHAEWLXRRVGALS 73
           VC  + GV+  + ++WL RR G+L+
Sbjct: 299 VCGFIGGVLGGIISDWLMRRTGSLN 323

>ESR2_ANGJA (O13012) Estrogen receptor beta (ER-beta)|
          Length = 573

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 142 RCPRGSRSPRTRGMAXPSRG-RSQRRGAGMVP---EATXSART 26
           R  R  R P  R +A    G R+QRRG G+VP   EA  SA T
Sbjct: 249 RGARHRRMPHIRELAGTGGGARTQRRGEGVVPQTQEAQSSALT 291

>SHP_RAT (P97947) Nuclear receptor 0B2 (Orphan nuclear receptor SHP) (Small|
           heterodimer partner)
          Length = 260

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 266 LSVGPRSRQYSPASRSSC 213
           LS GPR+R  +PASRS C
Sbjct: 25  LSPGPRTRPMAPASRSHC 42

>NNP1_HUMAN (P56182) NNP-1 protein (Novel nuclear protein 1) (Nucleolar protein|
           Nop52) (D21S2056E)
          Length = 461

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 133 RGSRSPRTRGMAXPSRGRSQRRGAGMVPEATXSA 32
           +G + P + GM    R RS+RRG G  PEA   A
Sbjct: 376 KGEKEPPSPGM---ERKRSRRRGVGADPEARAEA 406

>PCDB9_HUMAN (Q9Y5E1) Protocadherin beta 9 precursor (PCDH-beta9) (Protocadherin|
           3H)
          Length = 797

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 253 GPTESAEFSFTRFLTPHLAGYRG 321
           G +E+ EF F + +TPHL  +RG
Sbjct: 757 GGSETGEFKFLKPITPHLPPHRG 779


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,913,690
Number of Sequences: 219361
Number of extensions: 603138
Number of successful extensions: 2147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2140
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)