Clone Name | bart59b10 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_188159.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1080 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Plus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 204 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 263 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 264 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 323 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 324 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 383 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 384 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 443 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 444 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 503 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 504 gtgctgtgcgtgcaccacgactac 527
>ref|XM_506285.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0077F02.110 mRNA Length = 1092 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Plus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 190 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 249 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 250 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 309 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 310 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 369 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 370 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 429 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 430 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 489 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 490 gtgctgtgcgtgcaccacgactac 513
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Minus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 12984858 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 12984799 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 12984798 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 12984739 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 12984738 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 12984679 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 12984678 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 12984619 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 12984618 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 12984559 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 12984558 gtgctgtgcgtgcaccacgactac 12984535
>dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077F02 Length = 172442 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Minus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 59155 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 59096 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 59095 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 59036 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 59035 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 58976 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 58975 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 58916 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 58915 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 58856 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 58855 gtgctgtgcgtgcaccacgactac 58832
>dbj|AK120684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164D19, full insert sequence Length = 1040 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Plus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 200 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 259 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 260 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 319 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 320 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 379 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 380 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 439 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 440 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 499 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 500 gtgctgtgcgtgcaccacgactac 523
>dbj|AK104173.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B12, full insert sequence Length = 966 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Plus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 64 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 123 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 124 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 183 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 184 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 243 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 244 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 303 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 304 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 363 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 364 gtgctgtgcgtgcaccacgactac 387
>dbj|AK104124.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-D05, full insert sequence Length = 1080 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Plus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 204 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 263 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 264 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 323 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 324 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 383 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 384 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 443 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 444 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 503 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 504 gtgctgtgcgtgcaccacgactac 527
>dbj|AK061478.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G06, full insert sequence Length = 1092 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Plus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 190 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 249 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 250 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 309 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 310 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 369 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 370 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 429 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 430 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 489 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 490 gtgctgtgcgtgcaccacgactac 513
>dbj|AK060411.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-E03, full insert sequence Length = 954 Score = 404 bits (204), Expect = e-110 Identities = 294/324 (90%) Strand = Plus / Plus Query: 103 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 162 |||||||||| ||| || |||||||| |||||||||||||| |||||||||||||||||| Sbjct: 70 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 129 Query: 163 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 222 || ||||||| |||||||||||||||| ||| || ||||||||||| |||||||||||| Sbjct: 130 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 189 Query: 223 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcggagttctccttc 282 || || |||||||||||||||||||||||||| ||||||||| | |||||||||||| Sbjct: 190 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 249 Query: 283 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 342 ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 250 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 309 Query: 343 gacttcctcttcgtggcggacgtggcggagctggcgcgcatggccgaccctcgctacgcc 402 |||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| Sbjct: 310 gacttcctcttcgtcgccgacgtcgcggagctggcgcgcatggccgacccgcgctacgcg 369 Query: 403 gtgctctgcgtgcaccacgactac 426 ||||| |||||||||||||||||| Sbjct: 370 gtgctgtgcgtgcaccacgactac 393
>ref|NM_197354.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0076F20.4), mRNA Length = 1255 Score = 155 bits (78), Expect = 1e-34 Identities = 126/142 (88%) Strand = Plus / Plus Query: 211 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcg 270 |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||| | Sbjct: 246 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 305 Query: 271 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 330 ||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 306 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 365 Query: 331 ttcgtggactgcgacttcctct 352 ||||| |||||||||||||||| Sbjct: 366 ttcgtcgactgcgacttcctct 387
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 155 bits (78), Expect = 1e-34 Identities = 126/142 (88%) Strand = Plus / Minus Query: 211 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcg 270 |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||| | Sbjct: 25410 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 25351 Query: 271 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 330 ||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 25350 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 25291 Query: 331 ttcgtggactgcgacttcctct 352 ||||| |||||||||||||||| Sbjct: 25290 ttcgtcgactgcgacttcctct 25269
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 155 bits (78), Expect = 1e-34 Identities = 126/142 (88%) Strand = Plus / Minus Query: 211 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcg 270 |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||| | Sbjct: 19397544 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 19397485 Query: 271 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 330 ||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 19397484 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 19397425 Query: 331 ttcgtggactgcgacttcctct 352 ||||| |||||||||||||||| Sbjct: 19397424 ttcgtcgactgcgacttcctct 19397403
>dbj|AK103655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135F01, full insert sequence Length = 1110 Score = 155 bits (78), Expect = 1e-34 Identities = 126/142 (88%) Strand = Plus / Plus Query: 211 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcg 270 |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||| | Sbjct: 257 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 316 Query: 271 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 330 ||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 317 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 376 Query: 331 ttcgtggactgcgacttcctct 352 ||||| |||||||||||||||| Sbjct: 377 ttcgtcgactgcgacttcctct 398
>dbj|AK059344.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B09, full insert sequence Length = 1035 Score = 155 bits (78), Expect = 1e-34 Identities = 126/142 (88%) Strand = Plus / Plus Query: 211 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcg 270 |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||| | Sbjct: 188 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 247 Query: 271 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 330 ||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 248 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 307 Query: 331 ttcgtggactgcgacttcctct 352 ||||| |||||||||||||||| Sbjct: 308 ttcgtcgactgcgacttcctct 329
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 155 bits (78), Expect = 1e-34 Identities = 126/142 (88%) Strand = Plus / Minus Query: 211 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcgcg 270 |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||| | Sbjct: 19408820 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 19408761 Query: 271 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 330 ||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| Sbjct: 19408760 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 19408701 Query: 331 ttcgtggactgcgacttcctct 352 ||||| |||||||||||||||| Sbjct: 19408700 ttcgtcgactgcgacttcctct 19408679
>gb|AY301981.1| Agrotis ipsilon antennal binding protein X-1 mRNA, partial cds Length = 482 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 360 ggacgtggcggagctggcgcgcatgg 385 |||| ||||||||||||||||||||| Sbjct: 18 ggacatggcggagctggcgcgcatgg 43
>emb|AJ002518.1|HVAJ2518 Heliothis virescens mRNA for antennal binding protein X Length = 450 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 360 ggacgtggcggagctggcgcgcatgg 385 |||| ||||||||||||||||||||| Sbjct: 82 ggacatggcggagctggcgcgcatgg 107
>ref|NM_180666.2| Arabidopsis thaliana calcium ion binding AT3G10300 transcript variant AT3G10300.1 mRNA, complete cds Length = 1055 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 496 actgctgcggcgctcctccgt 476 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 457 actgctgcggcgctcctccgt 437
>ref|NM_111865.4| Arabidopsis thaliana calcium ion binding AT3G10300 transcript variant AT3G10300.3 mRNA, complete cds Length = 1258 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 515 actgctgcggcgctcctccgt 495 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 476 actgctgcggcgctcctccgt 456
>ref|NM_180667.2| Arabidopsis thaliana calcium ion binding AT3G10300 transcript variant AT3G10300.2 mRNA, complete cds Length = 1471 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 515 actgctgcggcgctcctccgt 495 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 476 actgctgcggcgctcctccgt 456
>ref|NM_001035591.1| Arabidopsis thaliana calcium ion binding AT3G10300 transcript variant AT3G10300.4 mRNA, complete cds Length = 1272 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 515 actgctgcggcgctcctccgt 495 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 476 actgctgcggcgctcctccgt 456
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 tcatcccgatcgtccagcagg 217 ||||||||||||||||||||| Sbjct: 804847 tcatcccgatcgtccagcagg 804827
>gb|BT015172.1| Arabidopsis thaliana At3g10300 gene, complete cds Length = 1008 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 400 actgctgcggcgctcctccgt 380 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 361 actgctgcggcgctcctccgt 341
>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence, complete sequence Length = 87937 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 43970 actgctgcggcgctcctccgt 43990 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 43931 actgctgcggcgctcctccgt 43951
>gb|AY062498.1| Arabidopsis thaliana Unknown protein (At3g10300; F14P13.10) mRNA, complete cds Length = 1196 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 458 actgctgcggcgctcctccgt 438 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actgctgcggcgctcctccgt 185 ||||||||||||||||||||| Sbjct: 419 actgctgcggcgctcctccgt 399
>gb|AY106704.1| Zea mays PCO100617 mRNA sequence Length = 870 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 ggagctggcgcgcatggccga 389 ||||||||||||||||||||| Sbjct: 131 ggagctggcgcgcatggccga 151
>gb|AF095748.1|AF095748 Burkholderia cepacia principal sigma factor (sigA), phthalate dioxygenase reductase (ophA1), putative phthalate permease N-terminal region, putative phathalate permease C-terminal region (ophD), 4,5-dihydroxyphthalate decarboxylase (ophC), phthalate-inducible quinolinate phosphoribosyl transferase (ophE), transposase (tnp), phthalate dihydrodiol dehydrogenase (ophB), and phthalate dioxygenase (ophA2) genes, complete cds; and unknown gene Length = 13610 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 gcggacgtggcggagctggcg 378 ||||||||||||||||||||| Sbjct: 11158 gcggacgtggcggagctggcg 11138
>gb|M90554.1|MZEEMBIV Corn late embryogenesis-abundant protein (EMB5) mRNA, complete cds Length = 430 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 ggagctggcgcgcatggccga 389 ||||||||||||||||||||| Sbjct: 55 ggagctggcgcgcatggccga 75
>gb|AC016019.4| Drosophila melanogaster clone BACR08P05, complete sequence Length = 192157 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 172613 tggcggacgtggcggagctg 172594
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tggcggagctggcgcgcatg 384 |||||||||||||||||||| Sbjct: 3889830 tggcggagctggcgcgcatg 3889811
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 cgcgtccgcgccgaanatgtcgc 46 ||||||||||||||| ||||||| Sbjct: 2981916 cgcgtccgcgccgaaaatgtcgc 2981938
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 cgcgtccgcgccgaanatgtcgc 46 ||||||||||||||| ||||||| Sbjct: 109358 cgcgtccgcgccgaaaatgtcgc 109380
>ref|NM_198020.1| Mus musculus TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae) (Trmt1), mRNA Length = 2149 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccgcgggtgggcgctcttcg 334 |||||||||||||||||||| Sbjct: 276 ccgcgggtgggcgctcttcg 257
>ref|XM_755142.1| Ustilago maydis 521 hypothetical protein (UM04088.1) partial mRNA Length = 1131 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gtggactgcgacttcctctt 353 |||||||||||||||||||| Sbjct: 604 gtggactgcgacttcctctt 623
>gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, complete sequence Length = 176552 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 ctccttcacccgcttcctga 295 |||||||||||||||||||| Sbjct: 75818 ctccttcacccgcttcctga 75799
>emb|X58868.1|HEPVGH Pseudorabies virus glycoprotein H gene Length = 3422 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 gcgctcctccgtgccgctggaggtcatc 201 |||||||| | ||||||||||||||||| Sbjct: 793 gcgctccttcctgccgctggaggtcatc 820
>emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 10/10 Length = 140057 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ccggcaccatgccagctcct 68 |||||||||||||||||||| Sbjct: 8877 ccggcaccatgccagctcct 8858
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 cgcgtccgcgccgaanatgtcgc 46 ||||||||||||||| ||||||| Sbjct: 3954899 cgcgtccgcgccgaaaatgtcgc 3954921
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ttctccttcacccgcttcct 293 |||||||||||||||||||| Sbjct: 183646 ttctccttcacccgcttcct 183665
>emb|AJ238947.1|DME238947 Drosophila melanogaster mRNA for Hrb57A ribonucleoprotein Length = 2040 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 880 tggcggacgtggcggagctg 899
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgaggccgggctgtactggc 244 |||||||||||||||||||| Sbjct: 5082471 cgaggccgggctgtactggc 5082452
>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence Length = 250948 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gaggtcatcccgatcgtcca 212 |||||||||||||||||||| Sbjct: 245603 gaggtcatcccgatcgtcca 245622
>ref|NM_206185.1| Drosophila melanogaster bancal CG13425-RA, transcript variant A (bl), mRNA Length = 2122 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 962 tggcggacgtggcggagctg 981
>ref|NM_206184.1| Drosophila melanogaster bancal CG13425-RC, transcript variant C (bl), mRNA Length = 2173 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 1013 tggcggacgtggcggagctg 1032
>ref|NM_206183.1| Drosophila melanogaster bancal CG13425-RD, transcript variant D (bl), mRNA Length = 1352 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 507 tggcggacgtggcggagctg 526
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 caggagctccgcgaggccgg 233 |||||||||||||||||||| Sbjct: 1928312 caggagctccgcgaggccgg 1928293
>ref|NM_145883.2| Drosophila melanogaster bancal CG13425-RB, transcript variant B (bl), mRNA Length = 2129 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 969 tggcggacgtggcggagctg 988
>gb|AY069684.1| Drosophila melanogaster LD45549 full length cDNA Length = 1252 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 31 tggcggacgtggcggagctg 50
>dbj|AK155251.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630211P03 product:similar to N2,N2-dimethylguanosine tRNA methyltransferase [Homo sapiens], full insert sequence Length = 2131 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccgcgggtgggcgctcttcg 334 |||||||||||||||||||| Sbjct: 272 ccgcgggtgggcgctcttcg 253
>dbj|AK171002.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630217D09 product:similar to N2,N2-dimethylguanosine tRNA methyltransferase [Homo sapiens], full insert sequence Length = 2130 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccgcgggtgggcgctcttcg 334 |||||||||||||||||||| Sbjct: 272 ccgcgggtgggcgctcttcg 253
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 gcgctcctccgtgccgctggaggtcatc 201 |||||||| | ||||||||||||||||| Sbjct: 61137 gcgctccttcctgccgctggaggtcatc 61164
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 gcaggagctccgcgaggccg 232 |||||||||||||||||||| Sbjct: 13993881 gcaggagctccgcgaggccg 13993900
>gb|AC009218.7|AC009218 Drosophila melanogaster, chromosome 2R, region 57B-57B, BAC clone BACR33D17, complete sequence Length = 156753 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 48081 tggcggacgtggcggagctg 48100
>gb|AC007837.4|AC007837 Drosophila melanogaster, chromosome 2R, region 57B2-B3, BAC clone BACR04I07, complete sequence Length = 123647 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 14975 tggcggacgtggcggagctg 14994
>gb|AF275629.1|AF275629 Drosophila melanogaster bancal protein mRNA, complete cds Length = 2028 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 871 tggcggacgtggcggagctg 890
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ccggcaccatgccagctcct 68 |||||||||||||||||||| Sbjct: 3178222 ccggcaccatgccagctcct 3178203
>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0031J07 Length = 172511 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 gcaggagctccgcgaggccg 232 |||||||||||||||||||| Sbjct: 111101 gcaggagctccgcgaggccg 111120
>emb|X61696.1|PRVGHG Pseudorabies virus gH gene for glycoprotein H Length = 2484 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 gcgctcctccgtgccgctggaggtcatc 201 |||||||| | ||||||||||||||||| Sbjct: 721 gcgctccttcctgccgctggaggtcatc 748
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ctggcgcgcatggccgaccc 392 |||||||||||||||||||| Sbjct: 1899569 ctggcgcgcatggccgaccc 1899550
>gb|AE003791.5| Drosophila melanogaster chromosome 2R, section 59 of 73 of the complete sequence Length = 263535 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 90923 tggcggacgtggcggagctg 90942
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 cgcgtccgcgccgaanatgtcgc 46 ||||||||||||||| ||||||| Sbjct: 3650435 cgcgtccgcgccgaagatgtcgc 3650457
>gb|BT001672.1| Drosophila melanogaster RE50346 full insert cDNA Length = 1352 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tggcggacgtggcggagctg 375 |||||||||||||||||||| Sbjct: 507 tggcggacgtggcggagctg 526
>gb|BC027404.1| Mus musculus TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:37065 IMAGE:4950980), complete cds Length = 2149 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ccgcgggtgggcgctcttcg 334 |||||||||||||||||||| Sbjct: 276 ccgcgggtgggcgctcttcg 257
>gb|M61196.1|SH1GPGH Pseudorabies virus glycoprotein gH (gH) gene, complete cds Length = 3249 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 gcgctcctccgtgccgctggaggtcatc 201 |||||||| | ||||||||||||||||| Sbjct: 648 gcgctccttcctgccgctggaggtcatc 675 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,821,679 Number of Sequences: 3902068 Number of extensions: 1821679 Number of successful extensions: 36658 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36150 Number of HSP's gapped (non-prelim): 499 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)