ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59b03 |
|---|---|
| Clone Library Name | barley_pub |
>TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger protein 87)| Length = 500 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = +1 Query: 292 KEDVTCPICLDYPHNAVLLRC-TSYEKGC 375 +E++TCPICLDY + V + C ++ +GC Sbjct: 7 QEELTCPICLDYFQDPVSIECGHNFCRGC 35
>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 542 Score = 30.8 bits (68), Expect = 0.81 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 283 KSWKEDVTCPICLDYPHNAVLLRC 354 +S +E+VTC ICLDY + V + C Sbjct: 8 RSLEEEVTCSICLDYLRDPVTIDC 31
>TRI26_PIG (O77666) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 30.8 bits (68), Expect = 0.81 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 283 KSWKEDVTCPICLDYPHNAVLLRC 354 +S +E+VTC ICLDY + V + C Sbjct: 8 RSLEEEVTCSICLDYLRDPVTIDC 31
>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 30.8 bits (68), Expect = 0.81 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 283 KSWKEDVTCPICLDYPHNAVLLRC 354 +S +E+VTC ICLDY + V + C Sbjct: 8 RSLEEEVTCSICLDYLRDPVTIDC 31
>TRI26_PANTR (Q7YR34) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 539 Score = 30.8 bits (68), Expect = 0.81 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 283 KSWKEDVTCPICLDYPHNAVLLRC 354 +S +E+VTC ICLDY + V + C Sbjct: 8 RSLEEEVTCSICLDYLRDPVTIDC 31
>TRI26_HUMAN (Q12899) Tripartite motif protein 26 (Zinc finger protein 173)| (Acid finger protein) (AFP) (RING finger protein 95) Length = 539 Score = 30.8 bits (68), Expect = 0.81 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 283 KSWKEDVTCPICLDYPHNAVLLRC 354 +S +E+VTC ICLDY + V + C Sbjct: 8 RSLEEEVTCSICLDYLRDPVTIDC 31
>VE5_HPV5B (P26551) Probable protein E5| Length = 168 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -1 Query: 291 PAFIKMHVQIKRAGPHHLLHHQVP 220 P + + V ++ PHHL+HHQVP Sbjct: 45 PVPVSVPVALQVPNPHHLVHHQVP 68
>TRI35_HUMAN (Q9UPQ4) Tripartite motif protein 35 (Hemopoeitic lineage switch| protein 5) Length = 493 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +1 Query: 283 KSWKEDVTCPICLDYPHNAVLLRC-TSYEKGC 375 +S+KE++ C +C D +AV LRC ++ +GC Sbjct: 13 RSFKEELLCAVCYDPFRDAVTLRCGHNFCRGC 44
>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 1 (EC 3.6.1.-) (SMARCA3-like protein 1) Length = 881 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 295 EDVTCPICLDYPHNAVLLRCTSYEKGCRPFVCDTDQ 402 ED CPIC+ P N ++ RC CR + T Q Sbjct: 631 EDFDCPICISPPTNIIITRCAHI--FCRACILQTLQ 664
>TRI43_HUMAN (Q96BQ3) Tripartite motif protein 43| Length = 446 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +1 Query: 265 LDMHLDKSWKEDVTCPICLDYPHNAVLLRCTSYEKGCRPFVC 390 +D ++++++TC ICL+Y + V + C CRP +C Sbjct: 1 MDSDFSHAFQKELTCVICLNYLVDPVTICCG--HSFCRPCLC 40
>TRI35_MOUSE (Q8C006) Tripartite motif protein 35 (Macrophage-derived| apoptosis-inducing RBCC protein) (MAIR protein) (Nc8 protein) (Hemopoeitic lineage switch protein 5) Length = 501 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +1 Query: 283 KSWKEDVTCPICLDYPHNAVLLRC 354 +S+KE++ C +C D +AV LRC Sbjct: 13 RSFKEELLCAVCYDPFRDAVTLRC 36
>YEIR_ECOLI (P33030) Hypothetical protein yeiR| Length = 328 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +3 Query: 234 EEGGEAQLF*SGHAS**KLEGGC-HLP--NLSRLPSQCSPAEVHVLREGLQAV 383 + GG+ QL S H K++G LP NL+ LP+ + + HV+++GL A+ Sbjct: 171 QNGGDRQLIHSEHG---KVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLAAL 220
>BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 837 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = +1 Query: 280 DKSWKEDVTCPICLDYPHNAVLLRC 354 ++ KE +TCP C P + ++L+C Sbjct: 776 NRQMKETLTCPSCKTRPKDCIMLKC 800
>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 828 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = +1 Query: 280 DKSWKEDVTCPICLDYPHNAVLLRC 354 ++ KE +TCP C P + ++L+C Sbjct: 767 NRQMKETLTCPSCKTRPKDCIMLKC 791
>RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A antigen)| (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen Ro/SS-A) (Tripartite motif protein 21) Length = 470 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 271 MHLDKSWKEDVTCPICLDYPHNAVLLRC 354 M L+K W E+VTC ICLD + + C Sbjct: 9 MSLEKMW-EEVTCSICLDPMVEPMSIEC 35
>SL17_ENTHI (P23502) 170 kDa surface lectin precursor| Length = 1285 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 286 SWKEDVTCPICLDYPHNAVLLRCTSYEKGCRPFVCDTDQ 402 S+ D T C Y H + CT C+ +VCD++Q Sbjct: 505 SYTCDETTGFCKKYKHGNL---CTGKTTNCQEYVCDSEQ 540
>TRI73_HUMAN (Q86UV7) Tripartite motif protein 73 (Tripartite motif protein 50B)| Length = 250 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +1 Query: 292 KEDVTCPICLDYPHNAVLLRC-TSYEKGC 375 ++ + CPICL+ +++L+C SY KGC Sbjct: 11 EDRLQCPICLEVFKESLMLQCGHSYCKGC 39
>TRI17_HUMAN (Q9Y577) Tripartite motif protein 17 (Testis RING finger protein)| (RING finger protein 16) Length = 477 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 271 MHLDKSWKEDVTCPICLDYPHNAVLLRC 354 + L + +E+ TC ICLDY + V+ C Sbjct: 4 VELARKLQEEATCSICLDYFTDPVMTTC 31
>TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12| Length = 284 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +1 Query: 283 KSWKEDVTCPICLDYPHNAVLLRC-TSYEKGC 375 K+ KE+VTCP+CL+ V C ++ +GC Sbjct: 7 KNLKEEVTCPVCLNLMVKPVSADCGHTFCQGC 38
>ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protein 210)| Length = 504 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1 Query: 304 TCPICL-DYPHNAVLLRCTSYEKGCRPFVCD 393 TCP C + H++ L++ G +P+VCD Sbjct: 315 TCPACRKSFSHHSTLIQHQRIHTGEKPYVCD 345
>TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulatory protein of| interleukin 2 receptor) Length = 496 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +1 Query: 292 KEDVTCPICLDYPHNAVLLRCT-SYEKGC 375 KE+VTCPICL+ V C S+ + C Sbjct: 10 KEEVTCPICLELLKEPVSADCNHSFCRAC 38
>TRI74_HUMAN (Q86UV6) Tripartite motif protein 74 (Tripartite motif protein 50C)| Length = 250 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +1 Query: 307 CPICLDYPHNAVLLRC-TSYEKGC 375 CPICL+ +++L+C SY KGC Sbjct: 16 CPICLEVFKESLMLQCGHSYCKGC 39
>TRI17_RAT (Q9WV59) Tripartite motif protein 17 (Testis RING finger protein)| Length = 477 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 271 MHLDKSWKEDVTCPICLDYPHNAVLLRC 354 + L + +E+ TC ICLDY + V+ C Sbjct: 4 VELARRLQEEATCSICLDYFTDPVMTAC 31
>TRI17_MOUSE (Q7TPM3) Tripartite motif protein 17| Length = 477 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 271 MHLDKSWKEDVTCPICLDYPHNAVLLRC 354 + L + +E+ TC ICLDY + V+ C Sbjct: 4 VELARRLQEEATCSICLDYFTDPVMTAC 31
>GLGB_RHOMR (Q93HU3) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 621 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +3 Query: 183 GHALRYRVRHGFREPD 230 GH +YR+RHGF + D Sbjct: 79 GHTYKYRIRHGFYQAD 94
>HIS7_BUCBP (P59454) Histidine biosynthesis bifunctional protein hisB| [Includes: Histidinol-phosphatase (EC 3.1.3.15); Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)] Length = 357 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +1 Query: 208 GMGSGNLMVKKVVRPSSFDLDMHLDK--SWKEDVTCP 312 G+GS N K +RP F +D+ L + ++E + CP Sbjct: 58 GLGSKNFPYKSFIRPHEFMIDVFLSQGIKFEEVLICP 94
>DG17_DICDI (P11467) Protein DG17| Length = 458 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/29 (31%), Positives = 15/29 (51%) Frame = +1 Query: 292 KEDVTCPICLDYPHNAVLLRCTSYEKGCR 378 K TCPIC ++ + + +C S C+ Sbjct: 22 KNKYTCPICFEFIYKKQIYQCKSGHHACK 50
>TRIM5_HUMAN (Q9C035) Tripartite motif protein 5 (EC 6.3.2.-) (RING finger| protein 88) Length = 493 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 292 KEDVTCPICLDYPHNAVLLRC 354 KE+VTCPICL+ + L C Sbjct: 10 KEEVTCPICLELLTQPLSLDC 30
>TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)| Length = 467 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 277 LDKSWKEDVTCPICLDYPHNAVLLRC 354 L + +E+ TC ICLDY + V+ C Sbjct: 6 LSTNLQEEATCAICLDYFTDPVMTDC 31
>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)| Length = 512 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1 Query: 304 TCPICL-DYPHNAVLLRCTSYEKGCRPFVCD 393 TCP C + H++ L++ G +P+VCD Sbjct: 323 TCPSCWKSFSHHSTLIQHQRIHTGEKPYVCD 353
>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger| protein 92) (BIA1 protein) Length = 468 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 277 LDKSWKEDVTCPICLDYPHNAVLLRC 354 L + +E+ TC ICLDY + V+ C Sbjct: 6 LSTNLQEEATCAICLDYFTDPVMTDC 31
>PYRC_CORGL (Q8NQ39) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 447 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 315 DWAGDILLPAFIKMHVQIKRAG 250 D G +LLP F+ MHV ++ G Sbjct: 59 DGNGGVLLPGFVDMHVHLREPG 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,085,246 Number of Sequences: 219361 Number of extensions: 873402 Number of successful extensions: 2633 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2481 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2629 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
