Clone Name | bart59b01 |
---|---|
Clone Library Name | barley_pub |
>gb|AY111785.1| Zea mays CL244_1 mRNA sequence Length = 1880 Score = 178 bits (90), Expect = 1e-41 Identities = 235/283 (83%), Gaps = 3/283 (1%) Strand = Plus / Plus Query: 196 tgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgatt 255 |||| ||||| || |||||||| || ||||| ||||| || ||||||||||| |||| | Sbjct: 281 tgctcgacgcagacgagttccgccggcagggccaccaagtcatcgacttcatcgccgact 340 Query: 256 actatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgca 315 |||| ||| |||||| ||||||||||||||||| ||||||| ||||||||| || ||| Sbjct: 341 actacggccgcatggacgactaccccgtgcaccccagcgtcaaccccggcttcctgcgcc 400 Query: 316 acctgctccccgcggaggccccgtgccgtccggag---cccgacgcgtttggctccgcgc 372 || |||||||| |||| |||| ||||||||| ||||||||||| || |||||| Sbjct: 401 gccagctccccgacaaggcgccgtcgcgtccggagtcgcccgacgcgttcggtgccgcgc 460 Query: 373 tcaaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatt 432 | ||||||||| ||| ||||||| || ||||||||||| ||||||||| ||||||| | Sbjct: 461 tgcgggacgtccgtgacctcatcctgccaggcatgacgcactggcagagcgcccgccact 520 Query: 433 ttgcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 | || |||||||||||||| ||||||||| ||||||||||||| Sbjct: 521 tcgcgcacttcccggcgtccagcagcaccgtcggcgccctcgg 563
>ref|NM_191411.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1602 Score = 170 bits (86), Expect = 3e-39 Identities = 232/281 (82%) Strand = Plus / Plus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 112 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 171 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 172 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 231 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 || ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 232 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 291 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 292 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 351 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| ||||||||||||| Sbjct: 352 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 392
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 170 bits (86), Expect = 3e-39 Identities = 232/281 (82%) Strand = Plus / Minus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 32495981 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 32495922 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 32495921 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 32495862 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 || ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 32495861 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 32495802 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 32495801 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 32495742 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| ||||||||||||| Sbjct: 32495741 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 32495701
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 170 bits (86), Expect = 3e-39 Identities = 232/281 (82%) Strand = Plus / Minus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 83502 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 83443 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 83442 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 83383 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 || ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 83382 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 83323 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 83322 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 83263 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| ||||||||||||| Sbjct: 83262 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 83222
>dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D01, full insert sequence Length = 1922 Score = 170 bits (86), Expect = 3e-39 Identities = 232/281 (82%) Strand = Plus / Plus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 235 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 294 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 295 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 354 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 || ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 355 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 414 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 415 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 474 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| ||||||||||||| Sbjct: 475 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 515
>dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene for tryptophan decarboxylase, complete cds Length = 1602 Score = 163 bits (82), Expect = 6e-37 Identities = 231/281 (82%) Strand = Plus / Plus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| ||||| || ||||||||||| | || |||||||| |||||||||| |||| Sbjct: 112 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 171 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct: 172 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 231 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 | ||||||||| || || |||| ||| ||||||||||| ||||||| | ||||| Sbjct: 232 cgacagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 291 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || Sbjct: 292 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 351 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| ||||||||||||| Sbjct: 352 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 392
>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA decarboxylase 2 (OSJNBa0032N04.8), mRNA Length = 1581 Score = 155 bits (78), Expect = 2e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 97 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 156 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 157 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 216 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 217 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 276 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 277 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 336 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| |||||||||||| Sbjct: 337 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 377
>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032N04, from chromosome 10, complete sequence Length = 159445 Score = 155 bits (78), Expect = 2e-34 Identities = 230/281 (81%) Strand = Plus / Minus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 63618 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 63559 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 63558 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 63499 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 63498 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 63439 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 63438 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 63379 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| |||||||||||| Sbjct: 63378 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 63338
>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0019N10, from chromosome 10, complete sequence Length = 192267 Score = 155 bits (78), Expect = 2e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 168762 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 168821 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 168822 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 168881 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 168882 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 168941 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 168942 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 169001 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| |||||||||||| Sbjct: 169002 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 169042
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 155 bits (78), Expect = 2e-34 Identities = 230/281 (81%) Strand = Plus / Minus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 11745557 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 11745498 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 11745497 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 11745438 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 11745437 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 11745378 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 11745377 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 11745318 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| |||||||||||| Sbjct: 11745317 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 11745277
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 155 bits (78), Expect = 2e-34 Identities = 230/281 (81%) Strand = Plus / Minus Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254 ||||| |||||||| ||||||||||| ||||||| | ||| ||||| | || |||| Sbjct: 11752897 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 11752838 Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314 ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| |||||| Sbjct: 11752837 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 11752778 Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374 ||| ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | Sbjct: 11752777 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 11752718 Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434 |||||||||| ||| ||||||| || || ||||||| ||||||||||||||||| || Sbjct: 11752717 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 11752658 Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475 || |||||||||||||||||||||||| |||||||||||| Sbjct: 11752657 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 11752617
>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7 Length = 344615 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 211 agttccggcgccagggtcaccagg 234 |||||||||||||||||||||||| Sbjct: 91725 agttccggcgccagggtcaccagg 91702
>emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on chromosome 10 Contains a novel gene and a CpG island, complete sequence Length = 91331 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 320 gctccccgcggaggccccgtgc 341 |||||||||||||||||||||| Sbjct: 16894 gctccccgcggaggccccgtgc 16915
>ref|XM_470371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 627 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 165 gcgccggagaagaagatgcaatgct 189 |||||||||||||||||||| |||| Sbjct: 147 gcgccggagaagaagatgcactgct 123
>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence Length = 130272 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 165 gcgccggagaagaagatgcaatgct 189 |||||||||||||||||||| |||| Sbjct: 7604 gcgccggagaagaagatgcactgct 7628
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 165 gcgccggagaagaagatgcaatgct 189 |||||||||||||||||||| |||| Sbjct: 35006703 gcgccggagaagaagatgcactgct 35006727
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 165 gcgccggagaagaagatgcaatgct 189 |||||||||||||||||||| |||| Sbjct: 35096775 gcgccggagaagaagatgcactgct 35096799
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 165 gcgccggagaagaagatgcaatgct 189 |||||||||||||||||||| |||| Sbjct: 8777 gcgccggagaagaagatgcactgct 8753
>dbj|AK110581.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E09, full insert sequence Length = 897 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 165 gcgccggagaagaagatgcaatgct 189 |||||||||||||||||||| |||| Sbjct: 163 gcgccggagaagaagatgcactgct 139
>gb|DQ177326.1| Ethanoligenens harbinense strain YUAN-3 Fe-hydrogenase large subunit gene, partial cds Length = 1041 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 tccggagcccgacgcgtttgg 364 ||||||||||||||||||||| Sbjct: 846 tccggagcccgacgcgtttgg 866
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 aggacgtccgcgacatcatc 395 |||||||||||||||||||| Sbjct: 5340499 aggacgtccgcgacatcatc 5340480
>gb|AC087699.11| Homo sapiens chromosome 15, clone RP11-64K10, complete sequence Length = 149287 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 tggcagagcccccgccattt 433 |||||||||||||||||||| Sbjct: 65115 tggcagagcccccgccattt 65134
>gb|AF082663.3| Rhodococcus sp. NCIMB12038 naphthalene degradation gene cluster, complete sequence Length = 11548 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 acttcccggcgtcgagcagc 458 |||||||||||||||||||| Sbjct: 5629 acttcccggcgtcgagcagc 5610
>emb|AJ401612.1|RSP401612 Rhodococcus sp. 1BN narA gene for putative cis-naphthalene 1,2-dioxygenase Length = 1975 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 acttcccggcgtcgagcagc 458 |||||||||||||||||||| Sbjct: 1512 acttcccggcgtcgagcagc 1493
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 tcccggcgtcgagcagcacc 461 |||||||||||||||||||| Sbjct: 4052310 tcccggcgtcgagcagcacc 4052291
>dbj|AB053207.1| Flavobacterium sp. SK1022 gene for endo-beta-N-acetylglucosaminidase, complete cds Length = 945 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 cgtcgagcagcaccatcggc 467 |||||||||||||||||||| Sbjct: 665 cgtcgagcagcaccatcggc 684
>dbj|AB024936.1| Rhodococcus sp. CIR2 naphthalene degradation genes (rnoA1, rnoA2, rnoA3, rnoA4, rnoB), complete cds Length = 12534 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 acttcccggcgtcgagcagc 458 |||||||||||||||||||| Sbjct: 6623 acttcccggcgtcgagcagc 6604 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,468,935 Number of Sequences: 3902068 Number of extensions: 2468935 Number of successful extensions: 44261 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44048 Number of HSP's gapped (non-prelim): 201 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)