ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart59b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY111785.1| Zea mays CL244_1 mRNA sequence 178 1e-41
2ref|NM_191411.1| Oryza sativa (japonica cultivar-group), predic... 170 3e-39
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
4dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 170 3e-39
5dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 3e-39
6dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene ... 163 6e-37
7ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative... 155 2e-34
8gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 155 2e-34
9gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare str... 155 2e-34
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 155 2e-34
12emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segmen... 48 0.026
13emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on ch... 44 0.41
14ref|XM_470371.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
15gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 42 1.6
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 42 1.6
19dbj|AK110581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
20gb|DQ177326.1| Ethanoligenens harbinense strain YUAN-3 Fe-hydrog... 42 1.6
21gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.4
22gb|AC087699.11| Homo sapiens chromosome 15, clone RP11-64K10, co... 40 6.4
23gb|AF082663.3| Rhodococcus sp. NCIMB12038 naphthalene degradatio... 40 6.4
24emb|AJ401612.1|RSP401612 Rhodococcus sp. 1BN narA gene for putat... 40 6.4
25gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.4
26dbj|AB053207.1| Flavobacterium sp. SK1022 gene for endo-beta-N-a... 40 6.4
27dbj|AB024936.1| Rhodococcus sp. CIR2 naphthalene degradation gen... 40 6.4

>gb|AY111785.1| Zea mays CL244_1 mRNA sequence
          Length = 1880

 Score =  178 bits (90), Expect = 1e-41
 Identities = 235/283 (83%), Gaps = 3/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 196 tgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgatt 255
           |||| ||||| || |||||||| || ||||| ||||| || |||||||||||  |||| |
Sbjct: 281 tgctcgacgcagacgagttccgccggcagggccaccaagtcatcgacttcatcgccgact 340

                                                                       
Query: 256 actatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgca 315
           |||| ||| ||||||  ||||||||||||||||| ||||||| ||||||||| || ||| 
Sbjct: 341 actacggccgcatggacgactaccccgtgcaccccagcgtcaaccccggcttcctgcgcc 400

                                                                       
Query: 316 acctgctccccgcggaggccccgtgccgtccggag---cccgacgcgtttggctccgcgc 372
            || ||||||||   |||| ||||  |||||||||   ||||||||||| ||  ||||||
Sbjct: 401 gccagctccccgacaaggcgccgtcgcgtccggagtcgcccgacgcgttcggtgccgcgc 460

                                                                       
Query: 373 tcaaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatt 432
           |   ||||||||| ||| ||||||| || ||||||||||| ||||||||| ||||||| |
Sbjct: 461 tgcgggacgtccgtgacctcatcctgccaggcatgacgcactggcagagcgcccgccact 520

                                                      
Query: 433 ttgcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
           | || |||||||||||||| ||||||||| |||||||||||||
Sbjct: 521 tcgcgcacttcccggcgtccagcagcaccgtcggcgccctcgg 563



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>ref|NM_191411.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1602

 Score =  170 bits (86), Expect = 3e-39
 Identities = 232/281 (82%)
 Strand = Plus / Plus

                                                                       
Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
           ||||| ||||| || ||||||||||| |  || ||||||||  ||||||||||  |||| 
Sbjct: 112 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 171

                                                                       
Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
           ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || |||
Sbjct: 172 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 231

                                                                       
Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
             || ||||||||| || || |||| ||| ||||||||||| |||||||   | ||||| 
Sbjct: 232 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 291

                                                                       
Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
             ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || 
Sbjct: 292 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 351

                                                    
Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
           || |||||||||||||||||||||||| |||||||||||||
Sbjct: 352 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 392



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  170 bits (86), Expect = 3e-39
 Identities = 232/281 (82%)
 Strand = Plus / Minus

                                                                            
Query: 195      ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
                ||||| ||||| || ||||||||||| |  || ||||||||  ||||||||||  |||| 
Sbjct: 32495981 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 32495922

                                                                            
Query: 255      tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
                ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || |||
Sbjct: 32495921 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 32495862

                                                                            
Query: 315      aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
                  || ||||||||| || || |||| ||| ||||||||||| |||||||   | ||||| 
Sbjct: 32495861 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 32495802

                                                                            
Query: 375      aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
                  ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || 
Sbjct: 32495801 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 32495742

                                                         
Query: 435      gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
                || |||||||||||||||||||||||| |||||||||||||
Sbjct: 32495741 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 32495701



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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  170 bits (86), Expect = 3e-39
 Identities = 232/281 (82%)
 Strand = Plus / Minus

                                                                         
Query: 195   ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
             ||||| ||||| || ||||||||||| |  || ||||||||  ||||||||||  |||| 
Sbjct: 83502 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 83443

                                                                         
Query: 255   tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
             ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || |||
Sbjct: 83442 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 83383

                                                                         
Query: 315   aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
               || ||||||||| || || |||| ||| ||||||||||| |||||||   | ||||| 
Sbjct: 83382 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 83323

                                                                         
Query: 375   aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
               ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || 
Sbjct: 83322 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 83263

                                                      
Query: 435   gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
             || |||||||||||||||||||||||| |||||||||||||
Sbjct: 83262 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 83222



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>dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D01, full
           insert sequence
          Length = 1922

 Score =  170 bits (86), Expect = 3e-39
 Identities = 232/281 (82%)
 Strand = Plus / Plus

                                                                       
Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
           ||||| ||||| || ||||||||||| |  || ||||||||  ||||||||||  |||| 
Sbjct: 235 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 294

                                                                       
Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
           ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || |||
Sbjct: 295 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 354

                                                                       
Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
             || ||||||||| || || |||| ||| ||||||||||| |||||||   | ||||| 
Sbjct: 355 cgccagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 414

                                                                       
Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
             ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || 
Sbjct: 415 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 474

                                                    
Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
           || |||||||||||||||||||||||| |||||||||||||
Sbjct: 475 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 515



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>dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene for tryptophan
           decarboxylase, complete cds
          Length = 1602

 Score =  163 bits (82), Expect = 6e-37
 Identities = 231/281 (82%)
 Strand = Plus / Plus

                                                                       
Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
           ||||| ||||| || ||||||||||| |  || ||||||||  ||||||||||  |||| 
Sbjct: 112 ctgctcgacgctgacgagttccggcggctcggccaccaggtcgtcgacttcatcgccgac 171

                                                                       
Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
           ||||| | | || |||| ||||||||||| ||||| |||||||| |||||||| || |||
Sbjct: 172 tactacgccggcctgggcgactaccccgtccacccaagcgtcactcccggcttcctgcgc 231

                                                                       
Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
              | ||||||||| || || |||| ||| ||||||||||| |||||||   | ||||| 
Sbjct: 232 cgacagctccccgccgacgcgccgtcccgcccggagcccgaggcgtttgcggcggcgctg 291

                                                                       
Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
             ||| ||||||||| ||||||| || ||| ||||||| ||||||||||| ||||| || 
Sbjct: 292 cgggatgtccgcgacctcatcctgcctggcgtgacgcactggcagagccctcgccacttc 351

                                                    
Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
           || |||||||||||||||||||||||| |||||||||||||
Sbjct: 352 gcgcacttcccggcgtcgagcagcaccgtcggcgccctcgg 392



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>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA
           decarboxylase 2 (OSJNBa0032N04.8), mRNA
          Length = 1581

 Score =  155 bits (78), Expect = 2e-34
 Identities = 230/281 (81%)
 Strand = Plus / Plus

                                                                       
Query: 195 ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
           ||||| |||||||| ||||||||||| |||||||  | |||  ||||| | ||  |||| 
Sbjct: 97  ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 156

                                                                       
Query: 255 tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
           ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| ||||||
Sbjct: 157 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 216

                                                                       
Query: 315 aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
            |||  ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | 
Sbjct: 217 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 276

                                                                       
Query: 375 aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
            |||||||||| ||| ||||||| || ||  ||||||| ||||||||||||||||| || 
Sbjct: 277 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 336

                                                    
Query: 435 gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
           || ||||||||||||||||||||||||  ||||||||||||
Sbjct: 337 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 377



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>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score =  155 bits (78), Expect = 2e-34
 Identities = 230/281 (81%)
 Strand = Plus / Minus

                                                                         
Query: 195   ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
             ||||| |||||||| ||||||||||| |||||||  | |||  ||||| | ||  |||| 
Sbjct: 63618 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 63559

                                                                         
Query: 255   tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
             ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| ||||||
Sbjct: 63558 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 63499

                                                                         
Query: 315   aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
              |||  ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | 
Sbjct: 63498 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 63439

                                                                         
Query: 375   aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
              |||||||||| ||| ||||||| || ||  ||||||| ||||||||||||||||| || 
Sbjct: 63438 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 63379

                                                      
Query: 435   gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
             || ||||||||||||||||||||||||  ||||||||||||
Sbjct: 63378 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 63338



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>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0019N10, from chromosome 10, complete sequence
          Length = 192267

 Score =  155 bits (78), Expect = 2e-34
 Identities = 230/281 (81%)
 Strand = Plus / Plus

                                                                          
Query: 195    ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
              ||||| |||||||| ||||||||||| |||||||  | |||  ||||| | ||  |||| 
Sbjct: 168762 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 168821

                                                                          
Query: 255    tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
              ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| ||||||
Sbjct: 168822 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 168881

                                                                          
Query: 315    aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
               |||  ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | 
Sbjct: 168882 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 168941

                                                                          
Query: 375    aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
               |||||||||| ||| ||||||| || ||  ||||||| ||||||||||||||||| || 
Sbjct: 168942 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 169001

                                                       
Query: 435    gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
              || ||||||||||||||||||||||||  ||||||||||||
Sbjct: 169002 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 169042



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  155 bits (78), Expect = 2e-34
 Identities = 230/281 (81%)
 Strand = Plus / Minus

                                                                            
Query: 195      ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
                ||||| |||||||| ||||||||||| |||||||  | |||  ||||| | ||  |||| 
Sbjct: 11745557 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 11745498

                                                                            
Query: 255      tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
                ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| ||||||
Sbjct: 11745497 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 11745438

                                                                            
Query: 315      aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
                 |||  ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | 
Sbjct: 11745437 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 11745378

                                                                            
Query: 375      aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
                 |||||||||| ||| ||||||| || ||  ||||||| ||||||||||||||||| || 
Sbjct: 11745377 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 11745318

                                                         
Query: 435      gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
                || ||||||||||||||||||||||||  ||||||||||||
Sbjct: 11745317 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 11745277



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  155 bits (78), Expect = 2e-34
 Identities = 230/281 (81%)
 Strand = Plus / Minus

                                                                            
Query: 195      ctgcttgacgccgatgagttccggcgccagggtcaccaggtgatcgacttcatatccgat 254
                ||||| |||||||| ||||||||||| |||||||  | |||  ||||| | ||  |||| 
Sbjct: 11752897 ctgctcgacgccgacgagttccggcgtcagggtcgtctggttgtcgaccttatcgccgac 11752838

                                                                            
Query: 255      tactatggcagcatgggtgactaccccgtgcaccctagcgtcacccccggctttctccgc 314
                ||||| | | ||||||| || |||||||||||||| | ||||| ||| ||||| ||||||
Sbjct: 11752837 tactacgccggcatgggggaataccccgtgcaccccaccgtcagccctggcttcctccgc 11752778

                                                                            
Query: 315      aacctgctccccgcggaggccccgtgccgtccggagcccgacgcgtttggctccgcgctc 374
                 |||  ||||| |||||| | |||| ||| | ||||||||||||||| | | | ||| | 
Sbjct: 11752777 caccgcctcccggcggagccgccgtcccgccgggagcccgacgcgttcgccgcggcgatg 11752718

                                                                            
Query: 375      aaggacgtccgcgacatcatcctccccggcatgacgcantggcagagcccccgccatttt 434
                 |||||||||| ||| ||||||| || ||  ||||||| ||||||||||||||||| || 
Sbjct: 11752717 caggacgtccgtgacgtcatcctgccggggctgacgcactggcagagcccccgccacttc 11752658

                                                         
Query: 435      gcccacttcccggcgtcgagcagcaccatcggcgccctcgg 475
                || ||||||||||||||||||||||||  ||||||||||||
Sbjct: 11752657 gcgcacttcccggcgtcgagcagcaccgccggcgccctcgg 11752617



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>emb|BX569695.1| Synechococcus sp. WH8102 complete genome; segment 7/7
          Length = 344615

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 211   agttccggcgccagggtcaccagg 234
             ||||||||||||||||||||||||
Sbjct: 91725 agttccggcgccagggtcaccagg 91702



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>emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on chromosome 10 Contains a
             novel gene and a CpG island, complete sequence
          Length = 91331

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 320   gctccccgcggaggccccgtgc 341
             ||||||||||||||||||||||
Sbjct: 16894 gctccccgcggaggccccgtgc 16915



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>ref|XM_470371.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 627

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 165 gcgccggagaagaagatgcaatgct 189
           |||||||||||||||||||| ||||
Sbjct: 147 gcgccggagaagaagatgcactgct 123



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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence,
            complete sequence
          Length = 130272

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 165  gcgccggagaagaagatgcaatgct 189
            |||||||||||||||||||| ||||
Sbjct: 7604 gcgccggagaagaagatgcactgct 7628



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 165      gcgccggagaagaagatgcaatgct 189
                |||||||||||||||||||| ||||
Sbjct: 35006703 gcgccggagaagaagatgcactgct 35006727



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 165      gcgccggagaagaagatgcaatgct 189
                |||||||||||||||||||| ||||
Sbjct: 35096775 gcgccggagaagaagatgcactgct 35096799



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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence,
            complete sequence
          Length = 171376

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 165  gcgccggagaagaagatgcaatgct 189
            |||||||||||||||||||| ||||
Sbjct: 8777 gcgccggagaagaagatgcactgct 8753



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>dbj|AK110581.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E09, full
           insert sequence
          Length = 897

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 165 gcgccggagaagaagatgcaatgct 189
           |||||||||||||||||||| ||||
Sbjct: 163 gcgccggagaagaagatgcactgct 139



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>gb|DQ177326.1| Ethanoligenens harbinense strain YUAN-3 Fe-hydrogenase large
           subunit gene, partial cds
          Length = 1041

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 344 tccggagcccgacgcgtttgg 364
           |||||||||||||||||||||
Sbjct: 846 tccggagcccgacgcgtttgg 866



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     aggacgtccgcgacatcatc 395
               ||||||||||||||||||||
Sbjct: 5340499 aggacgtccgcgacatcatc 5340480



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>gb|AC087699.11| Homo sapiens chromosome 15, clone RP11-64K10, complete sequence
          Length = 149287

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   tggcagagcccccgccattt 433
             ||||||||||||||||||||
Sbjct: 65115 tggcagagcccccgccattt 65134



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>gb|AF082663.3| Rhodococcus sp. NCIMB12038 naphthalene degradation gene cluster,
            complete sequence
          Length = 11548

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  acttcccggcgtcgagcagc 458
            ||||||||||||||||||||
Sbjct: 5629 acttcccggcgtcgagcagc 5610



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>emb|AJ401612.1|RSP401612 Rhodococcus sp. 1BN narA gene for putative cis-naphthalene
            1,2-dioxygenase
          Length = 1975

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  acttcccggcgtcgagcagc 458
            ||||||||||||||||||||
Sbjct: 1512 acttcccggcgtcgagcagc 1493



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 442     tcccggcgtcgagcagcacc 461
               ||||||||||||||||||||
Sbjct: 4052310 tcccggcgtcgagcagcacc 4052291



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>dbj|AB053207.1| Flavobacterium sp. SK1022 gene for
           endo-beta-N-acetylglucosaminidase, complete cds
          Length = 945

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 cgtcgagcagcaccatcggc 467
           ||||||||||||||||||||
Sbjct: 665 cgtcgagcagcaccatcggc 684



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>dbj|AB024936.1| Rhodococcus sp. CIR2 naphthalene degradation genes (rnoA1, rnoA2,
            rnoA3, rnoA4, rnoB), complete cds
          Length = 12534

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  acttcccggcgtcgagcagc 458
            ||||||||||||||||||||
Sbjct: 6623 acttcccggcgtcgagcagc 6604


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,468,935
Number of Sequences: 3902068
Number of extensions: 2468935
Number of successful extensions: 44261
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44048
Number of HSP's gapped (non-prelim): 201
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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