ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart58h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RLA0_METMA (Q8PY51) Acidic ribosomal protein P0 homolog (L10E) 30 2.3
2RLA0_METAC (Q8TI80) Acidic ribosomal protein P0 homolog (L10E) 28 8.9

>RLA0_METMA (Q8PY51) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 347

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 120 SSAAAVAGEEELRRMPPEDRGDARVEEDGVAAM 22
           ++ AA A EEE +   PE+  +   EEDG+A +
Sbjct: 310 ATVAAPAAEEEKKEEEPEEEEEDHAEEDGMAGL 342



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>RLA0_METAC (Q8TI80) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 347

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 120 SSAAAVAGEEELRRMPPEDRGDARVEEDGVAAM 22
           ++AAA A EE  +   PE+  +   EEDG+A +
Sbjct: 310 AAAAAPAEEEVKKEEEPEEEEEDHAEEDGMAGL 342


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,071,438
Number of Sequences: 219361
Number of extensions: 157241
Number of successful extensions: 943
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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