ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart58h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 72 7e-13
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 65 8e-11
3LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglyc... 33 0.26
4FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 33 0.45
5EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 32 0.58
6SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal t... 32 0.76
7ABI3_MOUSE (Q8BYZ1) ABI gene family member 3 (New molecule inclu... 30 2.2
8C4BP_RAT (Q63514) C4b-binding protein alpha chain precursor (C4bp) 30 2.9
9YJGB_BACSU (O34960) Hypothetical protein yjgB precursor 30 3.8
10PURL_STAAR (Q6GI15) Phosphoribosylformylglycinamidine synthase I... 28 8.4

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 72.0 bits (175), Expect = 7e-13
 Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
 Frame = +3

Query: 174 PVTYVFGDSMSDVGNNNYFQLSLARSNHPWYGIDYPNGVATGRFTNGRTIGDYMAAKFGI 353
           P  + FGDS+ D GNNN     L + N+  YG+D+P GVATGRF+NGR   DY++   G+
Sbjct: 124 PAVFFFGDSIFDTGNNNNLDTKL-KCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGV 182

Query: 354 -------XXXXXXXXXXXXXXXXXXGVNFASGGAGILNET 452
                                    GV+FASGGAG L +T
Sbjct: 183 KEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAGYLPQT 222



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +3

Query: 174 PVTYVFGDSMSDVGNNNYFQLSLARSNHPWYGIDYPNGVATGRFTNGRTIGDYMAAKFGI 353
           P  + FGDS+ D GNNN  +  + +SN+  YG+D+   VATGRF+NG    DY+A   G+
Sbjct: 203 PAVFFFGDSVFDTGNNNNLETKI-KSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGV 261

Query: 354 XXXX-XXXXXXXXXXXXXXGVNFASGGAG 437
                              GV+FASGGAG
Sbjct: 262 KEIVPAYLDPKIQPNDLLTGVSFASGGAG 290



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>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)|
          Length = 645

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 26/84 (30%), Positives = 34/84 (40%)
 Frame = +3

Query: 183 YVFGDSMSDVGNNNYFQLSLARSNHPWYGIDYPNGVATGRFTNGRTIGDYMAAKFGIXXX 362
           YVFGDS+SD GNN              Y +D  NG      T  +   D++A + GI   
Sbjct: 29  YVFGDSLSDGGNNGR------------YTVDGING------TESKLYNDFIAQQLGI--- 67

Query: 363 XXXXXXXXXXXXXXXGVNFASGGA 434
                          G N+A+GGA
Sbjct: 68  -------ELVNSKKGGTNYAAGGA 84



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +3

Query: 174 PVTYVFGDSMSDVGNNNYFQLSLARSNH-PWYGIDYPNGVATGRFTNGRTIGDYMAAKFG 350
           P  + FGDS SD G      LS A     P +G  +  G   GR+ +GR + D++A   G
Sbjct: 29  PAIFNFGDSNSDTGG-----LSAAFGQAGPPHGSSF-FGSPAGRYCDGRLVIDFIAESLG 82

Query: 351 IXXXXXXXXXXXXXXXXXXGVNFASGGAGI--LNET 452
           +                  G NFA+ G+ I  LN T
Sbjct: 83  L--PYLSAFLDSVGSNFSHGANFATAGSPIRALNST 116



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +3

Query: 174 PVTYVFGDSMSDVGNNNYFQLSLARSNHPWYGIDYPNGVATGRFTNGRTIGDYMAAKFGI 353
           P  + FGDS SD G        L    +P YG  + +  +TGR+++GR I D++A  F +
Sbjct: 33  PAIFNFGDSNSDTGGKAAAFYPL----NPPYGETFFHR-STGRYSDGRLIIDFIAESFNL 87



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>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 22/50 (44%), Positives = 25/50 (50%)
 Frame = -2

Query: 433 APPDAKLTPARKXSSASDRERNGGGGGMPNLAAM*SPMVLPLVNLPVATP 284
           A P  +LTP+R  S    R R GGGG  P   A  SP   P   LP +TP
Sbjct: 26  AHPSVRLTPSRP-SPLPHRPRGGGGG--PRGGARASPATQPPPLLPPSTP 72



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>ABI3_MOUSE (Q8BYZ1) ABI gene family member 3 (New molecule including SH3)|
           (Nesh)
          Length = 367

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 454 PVSFRMPAPPDAKLTPARKXSSASDRERNGGGGGMPNLAAM*SPMVLPLVNLPVATP 284
           P   ++PA PD KL+ A   SS +      G  G+P      +P   P   +   TP
Sbjct: 192 PEPVQLPAVPDGKLSAASSASSLASAGSAEGASGIPQSKGQVAPATPPPPPVAPVTP 248



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>C4BP_RAT (Q63514) C4b-binding protein alpha chain precursor (C4bp)|
          Length = 558

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
 Frame = +3

Query: 180 TYVFGDSMSDVGNNNYFQLSLARSNHPWY--------GIDYPNGVATGRFT 308
           TY FGD +S    N+    +  +S+  W+          D+P  +A GR+T
Sbjct: 352 TYFFGDEVSYTCQNDIMLTATCKSDGTWHPRTPSCHQSCDFPPAIAHGRYT 402



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>YJGB_BACSU (O34960) Hypothetical protein yjgB precursor|
          Length = 191

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 165 TKGPVTYVFGDSMSDVGNNNYFQLSLARSNHPWYGIDY 278
           TKG V   FG+    VG +N F L       P YG  Y
Sbjct: 76  TKGDVHAAFGEPERPVGGDNRFDLYHWNMGQPGYGFSY 113



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>PURL_STAAR (Q6GI15) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 729

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 171 GPVTYVFGDSMSDVGNNNYFQLSLARSNHPWYGIDYPNGVATG 299
           G   YV GD+  D G +   +L   + NH +  ID  + V  G
Sbjct: 571 GDKLYVIGDTKDDFGGSQLEKLIYGKVNHEFESIDLSSEVKKG 613


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,078,383
Number of Sequences: 219361
Number of extensions: 568774
Number of successful extensions: 1914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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