ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58h07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 131 bits (66), Expect = 2e-27 Identities = 108/122 (88%) Strand = Plus / Plus Query: 162 tgaagcgcgaggagccgacgctggtatcgccggcggaggcgacgccggcggggatgcagt 221 ||||||||| |||||| |||||| |||||||||||||||||||| ||||| | ||| Sbjct: 2703 tgaagcgcggcgagccggagctggtggcgccggcggaggcgacgccgacgggggagaagt 2762 Query: 222 actacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttca 281 ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| || Sbjct: 2763 actacctgtccaacctggaccagaacatcgccgtgatcgtgcagacggtgtactgctaca 2822 Query: 282 ag 283 || Sbjct: 2823 ag 2824 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 gtgctcgtccactaccacccgct 366 ||||||||||||||||||||||| Sbjct: 2891 gtgctcgtccactaccacccgct 2913
>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0028G07, complete sequence Length = 157463 Score = 131 bits (66), Expect = 2e-27 Identities = 108/122 (88%) Strand = Plus / Plus Query: 162 tgaagcgcgaggagccgacgctggtatcgccggcggaggcgacgccggcggggatgcagt 221 ||||||||| |||||| |||||| |||||||||||||||||||| ||||| | ||| Sbjct: 89020 tgaagcgcggcgagccggagctggtggcgccggcggaggcgacgccgacgggggagaagt 89079 Query: 222 actacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttca 281 ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| || Sbjct: 89080 actacctgtccaacctggaccagaacatcgccgtgatcgtgcagacggtgtactgctaca 89139 Query: 282 ag 283 || Sbjct: 89140 ag 89141 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 gtgctcgtccactaccacccgct 366 ||||||||||||||||||||||| Sbjct: 89208 gtgctcgtccactaccacccgct 89230
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 131 bits (66), Expect = 2e-27 Identities = 108/122 (88%) Strand = Plus / Plus Query: 162 tgaagcgcgaggagccgacgctggtatcgccggcggaggcgacgccggcggggatgcagt 221 ||||||||| |||||| |||||| |||||||||||||||||||| ||||| | ||| Sbjct: 17495006 tgaagcgcggcgagccggagctggtggcgccggcggaggcgacgccgacgggggagaagt 17495065 Query: 222 actacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttca 281 ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| || Sbjct: 17495066 actacctgtccaacctggaccagaacatcgccgtgatcgtgcagacggtgtactgctaca 17495125 Query: 282 ag 283 || Sbjct: 17495126 ag 17495127 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 gtgctcgtccactaccacccgct 366 ||||||||||||||||||||||| Sbjct: 17495194 gtgctcgtccactaccacccgct 17495216
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 131 bits (66), Expect = 2e-27 Identities = 108/122 (88%) Strand = Plus / Plus Query: 162 tgaagcgcgaggagccgacgctggtatcgccggcggaggcgacgccggcggggatgcagt 221 ||||||||| |||||| |||||| |||||||||||||||||||| ||||| | ||| Sbjct: 17588716 tgaagcgcggcgagccggagctggtggcgccggcggaggcgacgccgacgggggagaagt 17588775 Query: 222 actacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttca 281 ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| || Sbjct: 17588776 actacctgtccaacctggaccagaacatcgccgtgatcgtgcagacggtgtactgctaca 17588835 Query: 282 ag 283 || Sbjct: 17588836 ag 17588837 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 gtgctcgtccactaccacccgct 366 ||||||||||||||||||||||| Sbjct: 17588904 gtgctcgtccactaccacccgct 17588926
>ref|XM_463664.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1329 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 221 tactacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttc 280 |||||||| ||||| || |||||||||||||| || |||||||||||||| ||||||||| Sbjct: 115 tactacctctccaacctcgaccagaacatcgccgtcatcgtgcagaccgtctactgcttc 174 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcct 378 ||||||||| |||| |||||||||||||| Sbjct: 247 gtccactactaccctctcgccggccgcct 275
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 221 tactacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttc 280 |||||||| ||||| || |||||||||||||| || |||||||||||||| ||||||||| Sbjct: 40501532 tactacctctccaacctcgaccagaacatcgccgtcatcgtgcagaccgtctactgcttc 40501591 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcct 378 ||||||||| |||| |||||||||||||| Sbjct: 40501664 gtccactactaccctctcgccggccgcct 40501692 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 gtggagtgcaccggtgagggtgtcccgttcgtggaggccg 446 |||||||||||||| ||||| | | |||||||||||||| Sbjct: 10563010 gtggagtgcaccggcgagggcgcctggttcgtggaggccg 10562971
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1033B05 Length = 138882 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 221 tactacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttc 280 |||||||| ||||| || |||||||||||||| || |||||||||||||| ||||||||| Sbjct: 63156 tactacctctccaacctcgaccagaacatcgccgtcatcgtgcagaccgtctactgcttc 63215 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcct 378 ||||||||| |||| |||||||||||||| Sbjct: 63288 gtccactactaccctctcgccggccgcct 63316
>ref|NM_185277.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 346 gctcgtccactaccacccgctcgccggccgc 376 ||||||||||||| ||||||||||||||||| Sbjct: 210 gctcgtccactactacccgctcgccggccgc 240
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 346 gctcgtccactaccacccgctcgccggccgc 376 ||||||||||||| ||||||||||||||||| Sbjct: 86744 gctcgtccactactacccgctcgccggccgc 86774
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 346 gctcgtccactaccacccgctcgccggccgc 376 ||||||||||||| ||||||||||||||||| Sbjct: 3209027 gctcgtccactactacccgctcgccggccgc 3209057 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 407 gtggagtgcaccggtgagggtgtcccgttcgtggaggccga 447 |||||||||||||| ||||| ||| |||||| |||||||| Sbjct: 14439757 gtggagtgcaccggcgagggcgtcgtgttcgtcgaggccga 14439797
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 346 gctcgtccactaccacccgctcgccggccgc 376 ||||||||||||| ||||||||||||||||| Sbjct: 2851 gctcgtccactactacccgctcgccggccgc 2881
>ref|NM_194664.1| Oryza sativa (japonica cultivar-group) putative O-deacetylbaccatin III-10-0-acetyltransferase (OSJNBa0049K09.22), mRNA Length = 1269 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 202 gtccactactaccctctcgccggccgcctcg 232
>ref|NM_194662.1| Oryza sativa (japonica cultivar-group) putative O-deacetylbaccatin III-10-0-acetyltransferase (OSJNBa0049K09.20), mRNA Length = 1266 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 202 gtccactactaccctctcgccggccgcctcg 232
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 1423252 gtccactactaccctctcgccggccgcctcg 1423282 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 1410352 gtccactactaccctctcgccggccgcctcg 1410382
>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0049K09, complete sequence Length = 154181 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 36006 gtccactactaccctctcgccggccgcctcg 36036 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 23106 gtccactactaccctctcgccggccgcctcg 23136
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0049K09, complete sequence Length = 146576 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 122582 gtccactactaccctctcgccggccgcctcg 122612 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 109682 gtccactactaccctctcgccggccgcctcg 109712
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 1423252 gtccactactaccctctcgccggccgcctcg 1423282 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 1410352 gtccactactaccctctcgccggccgcctcg 1410382 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 221 tactacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttc 280 |||||||| ||||| || |||||||||||||| | | ||||||||||| |||| |||| Sbjct: 12989005 tactacctctccaacctcgaccagaacatcgccatcgttgtgcagaccgtctactacttc 12989064 Query: 281 a 281 | Sbjct: 12989065 a 12989065
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 1423249 gtccactactaccctctcgccggccgcctcg 1423279 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 350 gtccactaccacccgctcgccggccgcctcg 380 ||||||||| |||| |||||||||||||||| Sbjct: 1410349 gtccactactaccctctcgccggccgcctcg 1410379 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 221 tactacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttc 280 |||||||| ||||| || |||||||||||||| | | ||||||||||| |||| |||| Sbjct: 12996345 tactacctctccaacctcgaccagaacatcgccatcgttgtgcagaccgtctactacttc 12996404 Query: 281 a 281 | Sbjct: 12996405 a 12996405
>gb|AC067843.16| Homo sapiens chromosome 8, clone RP11-645E10, complete sequence Length = 187559 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 58 tctctgtgtcatccatacactcagag 83 |||||||||||| ||||||||||||| Sbjct: 993 tctctgtgtcatacatacactcagag 968
>gb|AC023955.11| Homo sapiens chromosome 8, clone RP11-153B5, complete sequence Length = 160905 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 58 tctctgtgtcatccatacactcagag 83 |||||||||||| ||||||||||||| Sbjct: 1494 tctctgtgtcatacatacactcagag 1469
>gb|AC020688.7| Homo sapiens chromosome 8, clone RP11-255B23, complete sequence Length = 198958 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 58 tctctgtgtcatccatacactcagag 83 |||||||||||| ||||||||||||| Sbjct: 24370 tctctgtgtcatacatacactcagag 24395
>ref|NM_103319.2| Arabidopsis thaliana adenylosuccinate lyase/ catalytic AT1G36280 mRNA, complete cds Length = 1785 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 42 tttaaacccatcaatatctctgtgtcatc 70 |||||||||||||| |||||||| ||||| Sbjct: 161 tttaaacccatcaaaatctctgtctcatc 189
>ref|NM_193078.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1085 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 117 cggcggaggcgacgccggcgg 97
>ref|XM_506490.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.133 mRNA Length = 1097 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 119 cggcggaggcgacgccggcgg 99
>ref|XM_478965.1| Oryza sativa (japonica cultivar-group), mRNA Length = 687 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 616 cggcggaggcgacgccggcgg 596
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 407 gtggagtgcaccggtgagggtgtcccgttcgtggaggccga 447 |||||||||||||| ||||| ||| |||||| |||||||| Sbjct: 70465 gtggagtgcaccggcgagggcgtcgtgttcgtcgaggccga 70505
>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08, complete sequence Length = 144593 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 221 tactacctgtccaatctggaccagaacatcgcggtgatcgtgcagaccgtgtactgcttc 280 |||||||| ||||| || |||||||||||||| | | ||||||||||| |||| |||| Sbjct: 87921 tactacctctccaacctcgaccagaacatcgccatcgttgtgcagaccgtctactacttc 87980 Query: 281 a 281 | Sbjct: 87981 a 87981
>gb|AE004201.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 109 of 251 of the complete chromosome Length = 11498 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 cgctttaaacccatcaatatc 59 ||||||||||||||||||||| Sbjct: 10546 cgctttaaacccatcaatatc 10526
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 348 tcgtccactaccacccgctcgccggccgc 376 |||||||||||||||| ||||||||||| Sbjct: 29799922 tcgtccactaccaccctatcgccggccgc 29799894
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 19968281 cggcggaggcgacgccggcgg 19968301 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cggaggcgacgccggcgggga 215 ||||||||||||||||||||| Sbjct: 7997224 cggaggcgacgccggcgggga 7997244
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 26088007 cggcggaggcgacgccggcgg 26087987 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 24048320 cggcggaggcgacgccggcgg 24048300
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 344 gtgctcgtccactaccacccgctcgccggccgcctcg 380 |||||||||| || | |||| |||||||||||||||| Sbjct: 4280183 gtgctcgtccccttctaccccctcgccggccgcctcg 4280219
>dbj|AB210504.1| Ciona intestinalis mRNA for insulin receptor, partial cds, clone: cidg849h04 Length = 2306 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 138 gaagcaaggtgcagctgatgtccttgaag 166 |||||||| |||||||||||||| ||||| Sbjct: 1487 gaagcaagttgcagctgatgtccatgaag 1515
>gb|AC025781.8|AC025781 Arabidopsis thaliana chromosome 1 BAC F15C21 genomic sequence, complete sequence Length = 112862 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 42 tttaaacccatcaatatctctgtgtcatc 70 |||||||||||||| |||||||| ||||| Sbjct: 104605 tttaaacccatcaaaatctctgtctcatc 104633
>gb|BT002331.1| Arabidopsis thaliana clone C105138 putative adenylosuccinate lyase (At1g36280) mRNA, complete cds Length = 1615 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 42 tttaaacccatcaatatctctgtgtcatc 70 |||||||||||||| |||||||| ||||| Sbjct: 69 tttaaacccatcaaaatctctgtctcatc 97
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 121569 cggcggaggcgacgccggcgg 121549
>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1174_G05 Length = 111202 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 89928 cggcggaggcgacgccggcgg 89908
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 344 gtgctcgtccactaccacccgctcgccggccgcctcg 380 |||||||||| || | |||| |||||||||||||||| Sbjct: 125404 gtgctcgtccccttctaccccctcgccggccgcctcg 125440
>dbj|AK109842.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E02, full insert sequence Length = 1500 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 344 gtgctcgtccactaccacccgctcgccggccgcctcg 380 |||||||||| || | |||| |||||||||||||||| Sbjct: 251 gtgctcgtccccttctaccccctcgccggccgcctcg 287
>dbj|AK104512.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H11, full insert sequence Length = 1085 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 117 cggcggaggcgacgccggcgg 97
>dbj|AK070297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C04, full insert sequence Length = 1769 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cggaggcgacgccggcgggga 215 ||||||||||||||||||||| Sbjct: 742 cggaggcgacgccggcgggga 762
>dbj|AK069204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009C12, full insert sequence Length = 2803 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 230 cggcggaggcgacgccggcgg 210
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 ccgctcgccggccgcctcggc 382 ||||||||||||||||||||| Sbjct: 1569580 ccgctcgccggccgcctcggc 1569600
>dbj|AK060320.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F07, full insert sequence Length = 1097 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 119 cggcggaggcgacgccggcgg 99
>gb|AY080867.1| Arabidopsis thaliana At1g36280 mRNA sequence Length = 1802 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 42 tttaaacccatcaatatctctgtgtcatc 70 |||||||||||||| |||||||| ||||| Sbjct: 161 tttaaacccatcaaaatctctgtctcatc 189
>dbj|AK115997.1| Ciona intestinalis cDNA, clone:citb003j18, full insert sequence Length = 1749 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 138 gaagcaaggtgcagctgatgtccttgaag 166 |||||||| |||||||||||||| ||||| Sbjct: 950 gaagcaagttgcagctgatgtccatgaag 978
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 19894495 cggcggaggcgacgccggcgg 19894515 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 cggaggcgacgccggcgggga 215 ||||||||||||||||||||| Sbjct: 7997105 cggaggcgacgccggcgggga 7997125
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 348 tcgtccactaccacccgctcgccggccgc 376 |||||||||||||||| ||||||||||| Sbjct: 80848 tcgtccactaccaccctatcgccggccgc 80820
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 cggaggcgacgccggcgggga 215 ||||||||||||||||||||| Sbjct: 2946 cggaggcgacgccggcgggga 2926
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cggcggaggcgacgccggcgg 212 ||||||||||||||||||||| Sbjct: 58979 cggcggaggcgacgccggcgg 58959
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151117 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 cggaggcgacgccggcgggga 215 ||||||||||||||||||||| Sbjct: 146454 cggaggcgacgccggcgggga 146434
>ref|NM_183607.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 453 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 407 gtggagtgcaccggtgagggtgtcccgttcgtggaggccg 446 |||||||||||||| ||||| | | |||||||||||||| Sbjct: 286 gtggagtgcaccggcgagggcgcctggttcgtggaggccg 325
>ref|XM_468307.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 gagccgacgctggtatcgccggcg 196 |||||||||||||| ||||||||| Sbjct: 97 gagccgacgctggtgtcgccggcg 74
>ref|XM_465691.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1791 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 333 acccgctcgccggccgcctc 352
>ref|XM_465687.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1518 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 263 acccgctcgccggccgcctc 282
>ref|XM_465684.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1745 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 322 acccgctcgccggccgcctc 341
>ref|XM_462955.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 cgccggcggaggcgacgccggcgg 212 |||||||||||||| ||||||||| Sbjct: 73 cgccggcggaggcggcgccggcgg 50
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cggcggaggcgacgccggcg 211 |||||||||||||||||||| Sbjct: 2697030 cggcggaggcgacgccggcg 2697049
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 cgccggcggaggcgacgccggcgg 212 |||||||||||||| ||||||||| Sbjct: 95476 cgccggcggaggcggcgccggcgg 95499
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 cgccggcggaggcgacgccggcgg 212 |||||||||||||| ||||||||| Sbjct: 20177392 cgccggcggaggcggcgccggcgg 20177415
>gb|AF294752.1| Hordeum vulgare subsp. vulgare glutamyl-tRNA reductase (hemA1) gene, partial cds Length = 3321 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcgacgccggcggggatgca 219 |||||||||||||||||||| Sbjct: 1192 gcgacgccggcggggatgca 1211
>gb|AY897184.1| Uncultured bacterium clone cosT-M40-KS52 modular polyketide synthase gene, partial cds Length = 671 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 tcgccggccgcctcggcatc 385 |||||||||||||||||||| Sbjct: 503 tcgccggccgcctcggcatc 484
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 tcgccggccgcctcggcatcagcc 389 ||||||| |||||||||||||||| Sbjct: 88307 tcgccggtcgcctcggcatcagcc 88284
>emb|X92403.1|HVGTRNAR1 H.vulgare mRNA for glutamyl-tRNA reductase, 1st isoform Length = 1938 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcgacgccggcggggatgca 219 |||||||||||||||||||| Sbjct: 188 gcgacgccggcggggatgca 207
>emb|X86101.1|HVHEMA1IS H.vulgare mRNA for glutamyl-tRNA reductase (1st isoform) Length = 1997 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcgacgccggcggggatgca 219 |||||||||||||||||||| Sbjct: 463 gcgacgccggcggggatgca 482
>gb|AC025173.5|AC025173 Homo sapiens chromosome 5 clone CTD-2036C20, complete sequence Length = 140935 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 acttcctctgtattctttct 38 |||||||||||||||||||| Sbjct: 83265 acttcctctgtattctttct 83246
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 cgccggcggaggcgacgccggcgg 212 |||||||||||||| ||||||||| Sbjct: 20170419 cgccggcggaggcggcgccggcgg 20170442
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 gagccgacgctggtatcgccggcg 196 |||||||||||||| ||||||||| Sbjct: 34531039 gagccgacgctggtgtcgccggcg 34531062 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 16802273 acccgctcgccggccgcctc 16802292 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 16793044 acccgctcgccggccgcctc 16793025 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 16779493 acccgctcgccggccgcctc 16779474
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gtcccgttcgtggaggccga 447 |||||||||||||||||||| Sbjct: 1594419 gtcccgttcgtggaggccga 1594438
>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0706B05 Length = 187835 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 407 gtggagtgcaccggtgagggtgtcccgttcgtggaggccg 446 |||||||||||||| ||||| | | |||||||||||||| Sbjct: 57633 gtggagtgcaccggcgagggcgcctggttcgtggaggccg 57594
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 accacccgctcgccggccgcctcg 380 ||||||||| |||||||||||||| Sbjct: 619796 accacccgcacgccggccgcctcg 619773
>dbj|AP004998.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036H07 Length = 149797 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 3330 acccgctcgccggccgcctc 3349
>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16 Length = 162527 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 156548 acccgctcgccggccgcctc 156529
>dbj|AP004302.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1122_H01 Length = 103030 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 50515 acccgctcgccggccgcctc 50534 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 41286 acccgctcgccggccgcctc 41267 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 27735 acccgctcgccggccgcctc 27716
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1520_C09 Length = 145553 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 gagccgacgctggtatcgccggcg 196 |||||||||||||| ||||||||| Sbjct: 41979 gagccgacgctggtgtcgccggcg 42002
>dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G06, full insert sequence Length = 1273 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 cgccggcggaggcgacgccggcgg 212 |||||||||||||| ||||||||| Sbjct: 91 cgccggcggaggcggcgccggcgg 68
>dbj|AK103832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148A21, full insert sequence Length = 1790 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 332 acccgctcgccggccgcctc 351
>dbj|AK103708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136O19, full insert sequence Length = 1745 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acccgctcgccggccgcctc 379 |||||||||||||||||||| Sbjct: 322 acccgctcgccggccgcctc 341
>dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D18, full insert sequence Length = 1398 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 cgccggcggaggcgacgccggcgg 212 |||||||||||||| ||||||||| Sbjct: 111 cgccggcggaggcggcgccggcgg 88
>dbj|AK070443.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054D03, full insert sequence Length = 1655 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 407 gtggagtgcaccggtgagggtgtcccgttcgtggaggccg 446 |||||||||||||| ||||| | | |||||||||||||| Sbjct: 393 gtggagtgcaccggcgagggcgcctggttcgtggaggccg 432
>dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D03, full insert sequence Length = 1328 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 cgccggcggaggcgacgccggcgg 212 |||||||||||||| ||||||||| Sbjct: 106 cgccggcggaggcggcgccggcgg 83
>dbj|AK060689.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A09, full insert sequence Length = 1553 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 407 gtggagtgcaccggtgagggtgtcccgttcgtggaggccg 446 |||||||||||||| ||||| | | |||||||||||||| Sbjct: 288 gtggagtgcaccggcgagggcgcctggttcgtggaggccg 327
>gb|AF108814.1|AF108814 Petromyzon marinus homeobox protein SIX4 (Six4) mRNA, partial cds Length = 191 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 agaccgtgtactgcttcaag 283 |||||||||||||||||||| Sbjct: 38 agaccgtgtactgcttcaag 57
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cggaggcgacgccggcgggg 214 |||||||||||||||||||| Sbjct: 2970498 cggaggcgacgccggcgggg 2970517
>gb|AC164569.3| Gallus gallus BAC clone CH261-138K23 from chromosome unknown, complete sequence Length = 248284 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 aaggtgcagctgatgtcctt 162 |||||||||||||||||||| Sbjct: 108320 aaggtgcagctgatgtcctt 108301
>gb|AY846870.1| Gordonia terrae phage GTE5 genomic sequence Length = 31661 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ggaggcgaagcagaacggcg 122 |||||||||||||||||||| Sbjct: 19971 ggaggcgaagcagaacggcg 19990
>dbj|D88382.1| Hordeum vulgare hemA1 mRNA for glutamyl-tRNA reductase, complete cds Length = 1864 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gcgacgccggcggggatgca 219 |||||||||||||||||||| Sbjct: 143 gcgacgccggcggggatgca 162
>emb|AL607032.16| Mouse DNA sequence from clone RP23-15L19 on chromosome 4, complete sequence Length = 136416 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 caccatggcgggaagcaagg 146 |||||||||||||||||||| Sbjct: 117330 caccatggcgggaagcaagg 117311 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,990,589 Number of Sequences: 3902068 Number of extensions: 2990589 Number of successful extensions: 64760 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63167 Number of HSP's gapped (non-prelim): 1590 length of query: 449 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 427 effective length of database: 17,147,199,772 effective search space: 7321854302644 effective search space used: 7321854302644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
