>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBb0061M13, complete sequence
          Length = 174910

 Score =  228 bits (115), Expect = 1e-56
 Identities = 207/238 (86%)
 Strand = Plus / Minus

                                                                          
Query: 141    gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 200
              ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 120923 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 120864

                                                                          
Query: 201    ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 260
              ||||||||||||||    ||||||||||||||||||||| ||||| ||  ||||||||| 
Sbjct: 120863 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 120804

                                                                          
Query: 261    cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 320
              ||||| ||||| |||| |  ||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 120803 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 120744

                                                                        
Query: 321    gggtatagcatcgccnagatccggcgccgcgaaggcgagttcgcccagctcacgccca 378
              || || ||||||||| ||||||||||||| |  || ||  ||| ||||||||||||||
Sbjct: 120743 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgccca 120686

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  228 bits (115), Expect = 1e-56
 Identities = 207/238 (86%)
 Strand = Plus / Minus

                                                                            
Query: 141      gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 200
                ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 10951719 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 10951660

                                                                            
Query: 201      ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 260
                ||||||||||||||    ||||||||||||||||||||| ||||| ||  ||||||||| 
Sbjct: 10951659 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 10951600

                                                                            
Query: 261      cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 320
                ||||| ||||| |||| |  ||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 10951599 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 10951540

                                                                          
Query: 321      gggtatagcatcgccnagatccggcgccgcgaaggcgagttcgcccagctcacgccca 378
                || || ||||||||| ||||||||||||| |  || ||  ||| ||||||||||||||
Sbjct: 10951539 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgccca 10951482

>dbj|AK107093.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H04, full
           insert sequence
          Length = 1130

 Score =  228 bits (115), Expect = 1e-56
 Identities = 207/238 (86%)
 Strand = Plus / Plus

                                                                       
Query: 141 gccatgatccagctgatgttcacgctgctggccgccgaggcagcgctggtgctcgtgctg 200
           ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 345 gccatgatccagctgctcttcacgctgctggccgcggaggcggcgctggtgctcgtgctg 404

                                                                       
Query: 201 ctcttccgcacgcccgctcgacgcctcgcgctgctcgccgtcgactgcagcaagcgcggc 260
           ||||||||||||||    ||||||||||||||||||||| ||||| ||  ||||||||| 
Sbjct: 405 ctcttccgcacgccgttccgacgcctcgcgctgctcgccatcgaccgcgccaagcgcggg 464

                                                                       
Query: 261 cgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgctcggctccagc 320
           ||||| ||||| |||| |  ||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 465 cgcggccccgtcatggtcaagacggtcgccgccaccatgctcgtcgtgctgggctccagc 524

                                                                     
Query: 321 gggtatagcatcgccnagatccggcgccgcgaaggcgagttcgcccagctcacgccca 378
           || || ||||||||| ||||||||||||| |  || ||  ||| ||||||||||||||
Sbjct: 525 ggctacagcatcgccaagatccggcgccgggtcggggatctcggccagctcacgccca 582

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                            
Query: 251      caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 310
                ||||||||||||||| ||||| ||||  || || ||||| |||||| | |||||||| ||
Sbjct: 15226941 caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 15226882

                           
Query: 311      cggctccagcg 321
                || ||||||||
Sbjct: 15226881 cgcctccagcg 15226871



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 144      atgatccagctgatgttcacgctgct 169
                ||||||||||||||||||||| ||||
Sbjct: 15227048 atgatccagctgatgttcacggtgct 15227023

>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0015G09
          Length = 140893

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                          
Query: 251    caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 310
              ||||||||||||||| ||||| ||||  || || ||||| |||||| | |||||||| ||
Sbjct: 101455 caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 101396

                         
Query: 311    cggctccagcg 321
              || ||||||||
Sbjct: 101395 cgcctccagcg 101385



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 144    atgatccagctgatgttcacgctgct 169
              ||||||||||||||||||||| ||||
Sbjct: 101562 atgatccagctgatgttcacggtgct 101537

>dbj|AK063619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E03, full
           insert sequence
          Length = 1070

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 251 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 310
           ||||||||||||||| ||||| ||||  || || ||||| |||||| | |||||||| ||
Sbjct: 90  caagcgcggccgcggacccgtcatggtgcgcaccgtcgccgccaccgtcctcgtcgtcct 149

                      
Query: 311 cggctccagcg 321
           || ||||||||
Sbjct: 150 cgcctccagcg 160

>gb|AY105569.1| Zea mays PCO107462 mRNA sequence
          Length = 1024

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 251 caagcgcggccgcgggcccgtgatggcccggactgtcgcggccaccatgctcgtcgtgct 310
           |||||| |||||||||||||| ||||  || ||  ||||||||||| |||| ||||||||
Sbjct: 297 caagcggggccgcgggcccgtcatggtgcgcaccatcgcggccaccgtgcttgtcgtgct 356

             
Query: 311 cg 312
           ||
Sbjct: 357 cg 358

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 162    acgctgctggccgccgaggcagcgctgg 189
              ||||||||||||||||||| ||||||||
Sbjct: 719263 acgctgctggccgccgaggaagcgctgg 719290

>ref|XM_507699.1| PREDICTED: Pan troglodytes similar to Rho GTPase activating protein
            21; Rho-GTPase activating protein 10 (LOC450355), mRNA
          Length = 5682

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 16   tactggtcctttccagatccc 36
            |||||||||||||||||||||
Sbjct: 4016 tactggtcctttccagatccc 3996

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 161     cacgctgctggccgccgaggcagcgctggtgct 193
               ||||||||||| ||||||||  |||||||||||
Sbjct: 1367498 cacgctgctggtcgccgaggaggcgctggtgct 1367530

>gb|AC122852.2| Mus musculus BAC clone RP23-172A6 from 18, complete sequence
          Length = 189709

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    tcccagtttccccattttcct 53
             |||||||||||||||||||||
Sbjct: 10426 tcccagtttccccattttcct 10406

>gb|AC121957.2| Mus musculus BAC clone RP24-232G13 from 18, complete sequence
          Length = 178929

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     tcccagtttccccattttcct 53
              |||||||||||||||||||||
Sbjct: 160044 tcccagtttccccattttcct 160024

>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
             complete sequence
          Length = 173522

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 186   ctggtgctcgtgctgctcttccgca 210
             |||||||||||| ||||||||||||
Sbjct: 68077 ctggtgctcgtggtgctcttccgca 68101

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 186      ctggtgctcgtgctgctcttccgca 210
                |||||||||||| ||||||||||||
Sbjct: 27637448 ctggtgctcgtggtgctcttccgca 27637472

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 173      cgccgaggcagcgctggtgct 193
                |||||||||||||||||||||
Sbjct: 10681587 cgccgaggcagcgctggtgct 10681567

>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0057I13
          Length = 156330

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 173    cgccgaggcagcgctggtgct 193
              |||||||||||||||||||||
Sbjct: 133899 cgccgaggcagcgctggtgct 133879

>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 173   cgccgaggcagcgctggtgct 193
             |||||||||||||||||||||
Sbjct: 18205 cgccgaggcagcgctggtgct 18185

>dbj|AK103540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132C04, full
           insert sequence
          Length = 1533

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 cgccgaggcagcgctggtgct 193
           |||||||||||||||||||||
Sbjct: 638 cgccgaggcagcgctggtgct 618

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     ggtgctcgtgctgctcttcc 207
               ||||||||||||||||||||
Sbjct: 1753229 ggtgctcgtgctgctcttcc 1753248

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     cacgctgctggccgccgagg 180
               ||||||||||||||||||||
Sbjct: 6074596 cacgctgctggccgccgagg 6074615

>ref|XM_838450.1| Leishmania major strain Friedlin DNA polymerase epsilon catalytic
           subunit (LMJ_1367) partial mRNA
          Length = 6915

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 ggtgctcgtgctgctcttcc 207
           ||||||||||||||||||||
Sbjct: 117 ggtgctcgtgctgctcttcc 136

>emb|AL590032.16| Human DNA sequence from clone RP11-51E20 on chromosome 10, complete
             sequence
          Length = 156048

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    cctttccagatcccagtttc 42
             ||||||||||||||||||||
Sbjct: 89931 cctttccagatcccagtttc 89912

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 205     tccgcacgcccgctcgacgc 224
               ||||||||||||||||||||
Sbjct: 1722727 tccgcacgcccgctcgacgc 1722746

>emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D16 on chromosome 6q26-27 Contains
             part of the gene for smooth muscle cell associated protein
             2 (SMAP2) or secreted modular calcium binding protein 2
             (SMOC2) and two CpG islands, complete sequence
          Length = 110603

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   aggcagcgctggtgctcgtg 197
             ||||||||||||||||||||
Sbjct: 53420 aggcagcgctggtgctcgtg 53439

>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24
          Length = 304250

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    cgctggtgctcgtgctgctc 203
              ||||||||||||||||||||
Sbjct: 175439 cgctggtgctcgtgctgctc 175420

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    cgctgctcgccgtcgactgc 248
              ||||||||||||||||||||
Sbjct: 510662 cgctgctcgccgtcgactgc 510643

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 167     gctggccgccgaggcagcgctggtgctcgtgc 198
               ||||||||||| ||| ||||||||| ||||||
Sbjct: 4416717 gctggccgccgcggcggcgctggtgatcgtgc 4416686



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     ctcgcgctgctcgccgtcga 244
               ||||||||||||||||||||
Sbjct: 1032676 ctcgcgctgctcgccgtcga 1032695

>dbj|AB070949.1| Streptomyces avermitilis polyene macrolide biosynthetic gene cluster
          Length = 78210

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   cgctgctcgccgtcgactgc 248
             ||||||||||||||||||||
Sbjct: 54196 cgctgctcgccgtcgactgc 54215


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,392,487
Number of Sequences: 3902068
Number of extensions: 2392487
Number of successful extensions: 53978
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52978
Number of HSP's gapped (non-prelim): 994
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)