ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58f11 |
|---|---|
| Clone Library Name | barley_pub |
>AKAP5_RAT (P24587) A-kinase anchor protein 5 (A-kinase anchor protein 150| kDa) (AKAP 150) (cAMP-dependent protein kinase regulatory subunit II high affinity binding protein) (P150) Length = 714 Score = 31.6 bits (70), Expect = 0.91 Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 3/107 (2%) Frame = +2 Query: 128 PVTSEAYGIEEKASSARDGQSFRKADGDHLAVSLTHPSPYTSFGYXH--SSKGQVVHWV- 298 P T+ G+EE + S R+ K DG + S T+ G SS Q V Sbjct: 263 PATTHQLGLEEPSDSIRESAPSGKDDGRRKTAAEEKKSGETALGQAEEASSVSQADKSVL 322 Query: 299 SKLSRRAQGFREHVTLGPKISETVKGKLSLGAQILQAGGIERVFRKA 439 S+ G E T+ S+ +GKLS + A E V +A Sbjct: 323 SQAEEATVGHTEEATVIQAQSQAKEGKLSQAEEATVAQAKETVLSQA 369
>ZGPAT_MOUSE (Q8VDM1) Zinc finger CCCH-type with G patch domain protein| Length = 511 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -2 Query: 338 HAHGSLAPFCSACSPSGQP-DPCCCAXSRKTCRGWDASTRQQGDRRRPS*TTGRP 177 HA G + P + P G+ D C +KT RG S R RR S GRP Sbjct: 335 HAEGRVEPIHAVVLPRGKSLDQCAEILQKKTKRGQAGSNRPPKCRRSGSRPEGRP 389
>M660_ARATH (P93318) Hypothetical mitochondrial protein AtMg00660 (ORF149)| Length = 149 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = -2 Query: 278 PCCCAXSRKTCRGWDASTRQQ-----GDRRRPS*TTGRP 177 PC R R A+TR+Q GDRRRPS T RP Sbjct: 36 PCLPKVPRGRARRSGATTREQSPHRQGDRRRPSQGTSRP 74
>LIS1_RAT (P63004) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -2 Query: 359 ISWDPRSHAHGSLAPFCSACSPSGQPDPCCCAXSR-KTCRGWDAST 225 ISW P S S SG+P P + SR KT + WD ST Sbjct: 281 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 326
>LIS1_PANTR (Q5IS43) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -2 Query: 359 ISWDPRSHAHGSLAPFCSACSPSGQPDPCCCAXSR-KTCRGWDAST 225 ISW P S S SG+P P + SR KT + WD ST Sbjct: 281 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 326
>LIS1_MOUSE (P63005) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -2 Query: 359 ISWDPRSHAHGSLAPFCSACSPSGQPDPCCCAXSR-KTCRGWDAST 225 ISW P S S SG+P P + SR KT + WD ST Sbjct: 281 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 326
>LIS1_MACFA (Q8HXX0) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -2 Query: 359 ISWDPRSHAHGSLAPFCSACSPSGQPDPCCCAXSR-KTCRGWDAST 225 ISW P S S SG+P P + SR KT + WD ST Sbjct: 281 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 326
>LIS1_HUMAN (P43034) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -2 Query: 359 ISWDPRSHAHGSLAPFCSACSPSGQPDPCCCAXSR-KTCRGWDAST 225 ISW P S S SG+P P + SR KT + WD ST Sbjct: 281 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 326
>LIS1_BOVIN (P43033) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Frame = -2 Query: 359 ISWDPRSHAHGSLAPFCSACSPSGQPDPCCCAXSR-KTCRGWDAST 225 ISW P S S SG+P P + SR KT + WD ST Sbjct: 281 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 326
>DNLJ_SYNY3 (P72588) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 669 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +2 Query: 275 KGQVVHWVSKLSRRAQGFREHVTLGPKISETVKGKLSL-GAQILQAGGIERVFRKA 439 +G ++HW S+ + QG E V + + V L G Q+ Q G+ER +K+ Sbjct: 435 QGSLIHWASRNALDIQGLGEKVVITLLENRLVNSVADLYGLQVEQLLGLERFAQKS 490
>VKGC_PONPY (Q5RF50) Vitamin K-dependent gamma-carboxylase (EC 6.4.-.-)| (Gamma-glutamyl carboxylase) (Vitamin K gamma glutamyl carboxylase) Length = 758 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +2 Query: 155 EEKASSARDGQSFRKADGDHLAVSLTHPSP----YTSFGYXHSSKGQVVHWVSKLSRRAQ 322 E+K + R+G+ + G++ V T PSP Y + Q + ++ +L + + Sbjct: 567 EQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYMYVYVNTTELALEQDLAYLQELKEKVE 626 Query: 323 GFREHVTLGPKISETVKGKLSLGAQ 397 E L P++ ++G++ G + Sbjct: 627 NGSETGPLPPELQPLLEGEVKGGPE 651
>VKGC_HUMAN (P38435) Vitamin K-dependent gamma-carboxylase (EC 6.4.-.-)| (Gamma-glutamyl carboxylase) (Vitamin K gamma glutamyl carboxylase) Length = 758 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +2 Query: 155 EEKASSARDGQSFRKADGDHLAVSLTHPSP----YTSFGYXHSSKGQVVHWVSKLSRRAQ 322 E+K + R+G+ + G++ V T PSP Y + Q + ++ +L + + Sbjct: 567 EQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYMYVYVNTTELALEQDLAYLQELKEKVE 626 Query: 323 GFREHVTLGPKISETVKGKLSLGAQ 397 E L P++ ++G++ G + Sbjct: 627 NGSETGPLPPELQPLLEGEVKGGPE 651
>SNF5_TETFL (O42467) SWI/SNF-related, matrix-associated, actin-dependent| regulator of chromatin subfamily B member 1 Length = 373 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/58 (25%), Positives = 27/58 (46%) Frame = -1 Query: 180 SLADDAFSSIPYASEVTGTPTTWPPLLDFILILAAEESLTKNDRSTRWWVNLASKVSG 7 + +++ ++ A TG W PLL+ + E+ + DR+TR LA+ G Sbjct: 315 AFSENPLPTVEIAIRNTGAADQWCPLLETLTDAEMEKKIRDQDRNTRRIRRLANTAPG 372
>DNAJ_GLUOX (Q5FSL4) Chaperone protein dnaJ| Length = 380 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = -2 Query: 311 CSACSPSGQPDPCCCAXSRKTCRGWDASTRQQGD--RRRPS*TTGRPWRTTPSP 156 C AC SG DP + + TC G QQG RP T RT +P Sbjct: 149 CEACHGSGSADPKAGSSTCPTCHGAGKVRAQQGFFLVERPCPTCHGSGRTVANP 202
>GSPF_KLEPN (P15745) General secretion pathway protein F (Pullulanase secretion| protein pulF) Length = 381 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Frame = -3 Query: 430 EHALDPAGLQDLGPQAQLPLHGLRYLGTQGHMLTEALRPSAQLAHP--VDNLTLAAVLVA 257 E ALD Q PQ + + G+R +GH L EA+R HP D L A V Sbjct: 81 EKALDAVAQQSEKPQLKTLIAGVRGKVLEGHSLAEAMR-----GHPGCFDALYCAMVAAG 135 Query: 256 E 254 E Sbjct: 136 E 136
>NFRA_ECOLI (P31600) Bacteriophage N4 adsorption protein A precursor| Length = 990 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 153 IPYASEVTGTPTTWPPLLDFILILAAEESLTKNDRS 46 +P + ++GT W PL D I +A E+ L N ++ Sbjct: 812 MPVKNPMSGTGLRWKPLRDQIFFIAVEQQLPLNGQN 847
>MEC10_CAEEL (P34886) Degenerin mec-10 (Mechanosensory abnormality protein 10)| Length = 724 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -2 Query: 296 PSGQPDPCCCAXSRKTCRGWDASTRQQ 216 PSG D C CA R+T W ++Q Sbjct: 264 PSGDNDMCICAFDRQTNDAWPCHRKEQ 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,472,469 Number of Sequences: 219361 Number of extensions: 1112442 Number of successful extensions: 4032 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3880 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4024 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
