ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58f11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473245.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 702 Score = 363 bits (183), Expect = 3e-97 Identities = 298/336 (88%), Gaps = 3/336 (0%) Strand = Plus / Plus Query: 106 cggcggccatgtcgtgggagttccagtgacctccgaggcgtacgggatagaggagaaggc 165 ||||| ||||||| | ||||| || |||||| || |||||| || ||||||||| ||| Sbjct: 21 cggcgtccatgtcatcggagtcccggtgaccgccaaggcgtttggcatagaggaggaggt 80 Query: 166 gtcgtccgccagggacggccagtcgttcaggaaggccgacggcgatcaccttgctgtctc 225 ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 81 gtcgttggccaggg---gccagtcgttcaggaaggccgacggcgatcaccttgcggtctc 137 Query: 226 gttgacgcatcccagcccctacacgtctttcggctacnagcacagcagcaagggtcaggt 285 |||| |||| |||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 138 gttgtcgcaccccagcccttatacgtctttcggctataagcacagcagcaagggtcaggt 197 Query: 286 tgtccactgggtgagcaagctgagcagaagggcgcaaggcttccgtgagcatgtgacctt 345 | ||||||||||||||||||||||||||||||| || |||||| | |||||||||||||| Sbjct: 198 tatccactgggtgagcaagctgagcagaagggcacagggcttcagggagcatgtgacctt 257 Query: 346 gggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcccagatcctgca 405 ||| || ||| | |||||||| ||||||||||||||||||||||| || | |||||||| Sbjct: 258 ggggccaaagctgtcggagacggtgaaggggaagctgagcctgggcgcgaaaatcctgca 317 Query: 406 ggccggcgggatcgagcgcgtgttccggaaggcgtt 441 |||||||||||||||||||||||||||||||||||| Sbjct: 318 ggccggcgggatcgagcgcgtgttccggaaggcgtt 353
>dbj|AK061581.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H09, full insert sequence Length = 1103 Score = 363 bits (183), Expect = 3e-97 Identities = 298/336 (88%), Gaps = 3/336 (0%) Strand = Plus / Plus Query: 106 cggcggccatgtcgtgggagttccagtgacctccgaggcgtacgggatagaggagaaggc 165 ||||| ||||||| | ||||| || |||||| || |||||| || ||||||||| ||| Sbjct: 144 cggcgtccatgtcatcggagtcccggtgaccgccaaggcgtttggcatagaggaggaggt 203 Query: 166 gtcgtccgccagggacggccagtcgttcaggaaggccgacggcgatcaccttgctgtctc 225 ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 204 gtcgttggccaggg---gccagtcgttcaggaaggccgacggcgatcaccttgcggtctc 260 Query: 226 gttgacgcatcccagcccctacacgtctttcggctacnagcacagcagcaagggtcaggt 285 |||| |||| |||||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 261 gttgtcgcaccccagcccttatacgtctttcggctataagcacagcagcaagggtcaggt 320 Query: 286 tgtccactgggtgagcaagctgagcagaagggcgcaaggcttccgtgagcatgtgacctt 345 | ||||||||||||||||||||||||||||||| || |||||| | |||||||||||||| Sbjct: 321 tatccactgggtgagcaagctgagcagaagggcacagggcttcagggagcatgtgacctt 380 Query: 346 gggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcccagatcctgca 405 ||| || ||| | |||||||| ||||||||||||||||||||||| || | |||||||| Sbjct: 381 ggggccaaagctgtcggagacggtgaaggggaagctgagcctgggcgcgaaaatcctgca 440 Query: 406 ggccggcgggatcgagcgcgtgttccggaaggcgtt 441 |||||||||||||||||||||||||||||||||||| Sbjct: 441 ggccggcgggatcgagcgcgtgttccggaaggcgtt 476
>ref|XM_466938.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 182 bits (92), Expect = 6e-43 Identities = 205/243 (84%) Strand = Plus / Plus Query: 196 gaaggccgacggcgatcaccttgctgtctcgttgacgcatcccagcccctacacgtcttt 255 ||||| ||||||||| | ||| || |||||||||||||| || ||||| ||||||||||| Sbjct: 96 gaaggtcgacggcgaccgcctcgccgtctcgttgacgcacccgagcccgtacacgtcttt 155 Query: 256 cggctacnagcacagcagcaagggtcaggttgtccactgggtgagcaagctgagcagaag 315 ||||||| |||||||||| ||| ||||| |||||||||||| ||||||| ||||| | Sbjct: 156 cggctacaagcacagcagtaagctccaggtgatccactgggtgaacaagctgggcagacg 215 Query: 316 ggcgcaaggcttccgtgagcatgtgaccttgggtcccaagatatcggagaccgtgaaggg 375 ||| || || ||| | || |||||||||||||| || ||| | |||||||| |||| ||| Sbjct: 216 ggctcagggtttcagggatcatgtgaccttggggccgaagctgtcggagacggtgagggg 275 Query: 376 gaagctgagcctgggggcccagatcctgcaggccggcgggatcgagcgcgtgttccggaa 435 ||||||||||||||| || |||||||||||||||||| | ||||||||||||||| | Sbjct: 276 gaagctgagcctgggcgcgaggatcctgcaggccggcggcgtggagcgcgtgttccggca 335 Query: 436 ggc 438 ||| Sbjct: 336 ggc 338
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 135 bits (68), Expect = 1e-28 Identities = 141/165 (85%), Gaps = 3/165 (1%) Strand = Plus / Minus Query: 106 cggcggccatgtcgtgggagttccagtgacctccgaggcgtacgggatagaggagaaggc 165 ||||| ||||||| | ||||| || |||||| || |||||| || ||||||||| ||| Sbjct: 93654 cggcgtccatgtcatcggagtcccggtgaccgccaaggcgtttggcatagaggaggaggt 93595 Query: 166 gtcgtccgccagggacggccagtcgttcaggaaggccgacggcgatcaccttgctgtctc 225 ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 93594 gtcgttggccaggg---gccagtcgttcaggaaggccgacggcgatcaccttgcggtctc 93538 Query: 226 gttgacgcatcccagcccctacacgtctttcggctacnagcacag 270 |||| |||| |||||||| || |||||||||||||| ||||||| Sbjct: 93537 gttgtcgcaccccagcccttatacgtctttcggctataagcacag 93493 Score = 135 bits (68), Expect = 1e-28 Identities = 95/104 (91%) Strand = Plus / Minus Query: 338 gtgaccttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcccag 397 ||||||||||| || ||| | |||||||| ||||||||||||||||||||||| || | Sbjct: 93198 gtgaccttggggccaaagctgtcggagacggtgaaggggaagctgagcctgggcgcgaaa 93139 Query: 398 atcctgcaggccggcgggatcgagcgcgtgttccggaaggcgtt 441 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93138 atcctgcaggccggcgggatcgagcgcgtgttccggaaggcgtt 93095 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 270 gcagcaagggtcaggttgtccactgggtgagcaagctgagcagaagggcgcaaggcttcc 329 ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct: 93386 gcagcaagggtcaggttatccactgggtgagcaagctgagcagaagggcacagggcttca 93327 Query: 330 gtgagcatg 338 | ||||||| Sbjct: 93326 gggagcatg 93318
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 135 bits (68), Expect = 1e-28 Identities = 141/165 (85%), Gaps = 3/165 (1%) Strand = Plus / Minus Query: 106 cggcggccatgtcgtgggagttccagtgacctccgaggcgtacgggatagaggagaaggc 165 ||||| ||||||| | ||||| || |||||| || |||||| || ||||||||| ||| Sbjct: 26317077 cggcgtccatgtcatcggagtcccggtgaccgccaaggcgtttggcatagaggaggaggt 26317018 Query: 166 gtcgtccgccagggacggccagtcgttcaggaaggccgacggcgatcaccttgctgtctc 225 ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 26317017 gtcgttggccaggg---gccagtcgttcaggaaggccgacggcgatcaccttgcggtctc 26316961 Query: 226 gttgacgcatcccagcccctacacgtctttcggctacnagcacag 270 |||| |||| |||||||| || |||||||||||||| ||||||| Sbjct: 26316960 gttgtcgcaccccagcccttatacgtctttcggctataagcacag 26316916 Score = 135 bits (68), Expect = 1e-28 Identities = 95/104 (91%) Strand = Plus / Minus Query: 338 gtgaccttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcccag 397 ||||||||||| || ||| | |||||||| ||||||||||||||||||||||| || | Sbjct: 26316621 gtgaccttggggccaaagctgtcggagacggtgaaggggaagctgagcctgggcgcgaaa 26316562 Query: 398 atcctgcaggccggcgggatcgagcgcgtgttccggaaggcgtt 441 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26316561 atcctgcaggccggcgggatcgagcgcgtgttccggaaggcgtt 26316518 Score = 97.6 bits (49), Expect = 3e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 270 gcagcaagggtcaggttgtccactgggtgagcaagctgagcagaagggcgcaaggcttcc 329 ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct: 26316809 gcagcaagggtcaggttatccactgggtgagcaagctgagcagaagggcacagggcttca 26316750 Query: 330 gtgagcatg 338 | ||||||| Sbjct: 26316749 gggagcatg 26316741
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 338 gtgaccttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcccag 397 ||||||||||| || ||| | |||||||| |||| |||||||||||||||||| || | Sbjct: 25542411 gtgaccttggggccgaagctgtcggagacggtgagggggaagctgagcctgggcgcgagg 25542352 Query: 398 atcctgcaggccggcgggatcgagcgcgtgttccggaaggc 438 ||||||||||||||||| | ||||||||||||||| |||| Sbjct: 25542351 atcctgcaggccggcggcgtggagcgcgtgttccggcaggc 25542311 Score = 79.8 bits (40), Expect = 7e-12 Identities = 66/75 (88%) Strand = Plus / Minus Query: 196 gaaggccgacggcgatcaccttgctgtctcgttgacgcatcccagcccctacacgtcttt 255 ||||| ||||||||| | ||| || |||||||||||||| || ||||| ||||||||||| Sbjct: 25542778 gaaggtcgacggcgaccgcctcgccgtctcgttgacgcacccgagcccgtacacgtcttt 25542719 Query: 256 cggctacnagcacag 270 ||||||| ||||||| Sbjct: 25542718 cggctacaagcacag 25542704 Score = 44.1 bits (22), Expect = 0.38 Identities = 49/58 (84%) Strand = Plus / Minus Query: 357 tatcggagaccgtgaaggggaagctgagcctgggggcccagatcctgcaggccggcgg 414 ||||||| || || ||||||||||| | ||||| |||| |||||| ||||||||||| Sbjct: 25546981 tatcggaaacggtcaaggggaagctcacgctgggcgcccggatcctccaggccggcgg 25546924
>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22 Length = 157627 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 338 gtgaccttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcccag 397 ||||||||||| || ||| | |||||||| |||| |||||||||||||||||| || | Sbjct: 12458 gtgaccttggggccgaagctgtcggagacggtgagggggaagctgagcctgggcgcgagg 12399 Query: 398 atcctgcaggccggcgggatcgagcgcgtgttccggaaggc 438 ||||||||||||||||| | ||||||||||||||| |||| Sbjct: 12398 atcctgcaggccggcggcgtggagcgcgtgttccggcaggc 12358 Score = 79.8 bits (40), Expect = 7e-12 Identities = 66/75 (88%) Strand = Plus / Minus Query: 196 gaaggccgacggcgatcaccttgctgtctcgttgacgcatcccagcccctacacgtcttt 255 ||||| ||||||||| | ||| || |||||||||||||| || ||||| ||||||||||| Sbjct: 12825 gaaggtcgacggcgaccgcctcgccgtctcgttgacgcacccgagcccgtacacgtcttt 12766 Query: 256 cggctacnagcacag 270 ||||||| ||||||| Sbjct: 12765 cggctacaagcacag 12751 Score = 44.1 bits (22), Expect = 0.38 Identities = 49/58 (84%) Strand = Plus / Minus Query: 357 tatcggagaccgtgaaggggaagctgagcctgggggcccagatcctgcaggccggcgg 414 ||||||| || || ||||||||||| | ||||| |||| |||||| ||||||||||| Sbjct: 17028 tatcggaaacggtcaaggggaagctcacgctgggcgcccggatcctccaggccggcgg 16971
>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1581_H09 Length = 86699 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 338 gtgaccttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcccag 397 ||||||||||| || ||| | |||||||| |||| |||||||||||||||||| || | Sbjct: 33810 gtgaccttggggccgaagctgtcggagacggtgagggggaagctgagcctgggcgcgagg 33751 Query: 398 atcctgcaggccggcgggatcgagcgcgtgttccggaaggc 438 ||||||||||||||||| | ||||||||||||||| |||| Sbjct: 33750 atcctgcaggccggcggcgtggagcgcgtgttccggcaggc 33710 Score = 79.8 bits (40), Expect = 7e-12 Identities = 66/75 (88%) Strand = Plus / Minus Query: 196 gaaggccgacggcgatcaccttgctgtctcgttgacgcatcccagcccctacacgtcttt 255 ||||| ||||||||| | ||| || |||||||||||||| || ||||| ||||||||||| Sbjct: 34177 gaaggtcgacggcgaccgcctcgccgtctcgttgacgcacccgagcccgtacacgtcttt 34118 Query: 256 cggctacnagcacag 270 ||||||| ||||||| Sbjct: 34117 cggctacaagcacag 34103 Score = 44.1 bits (22), Expect = 0.38 Identities = 49/58 (84%) Strand = Plus / Minus Query: 357 tatcggagaccgtgaaggggaagctgagcctgggggcccagatcctgcaggccggcgg 414 ||||||| || || ||||||||||| | ||||| |||| |||||| ||||||||||| Sbjct: 38380 tatcggaaacggtcaaggggaagctcacgctgggcgcccggatcctccaggccggcgg 38323
>ref|XM_466939.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1157 Score = 48.1 bits (24), Expect = 0.024 Identities = 66/80 (82%) Strand = Plus / Plus Query: 335 catgtgaccttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcc 394 ||||||||| | || || ||| ||||||| || || ||||||||||| | ||||| ||| Sbjct: 349 catgtgaccctcgggccgaagctatcggaaacggtcaaggggaagctcacgctgggcgcc 408 Query: 395 cagatcctgcaggccggcgg 414 | |||||| ||||||||||| Sbjct: 409 cggatcctccaggccggcgg 428
>dbj|AK069779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031H22, full insert sequence Length = 1157 Score = 48.1 bits (24), Expect = 0.024 Identities = 66/80 (82%) Strand = Plus / Plus Query: 335 catgtgaccttgggtcccaagatatcggagaccgtgaaggggaagctgagcctgggggcc 394 ||||||||| | || || ||| ||||||| || || ||||||||||| | ||||| ||| Sbjct: 349 catgtgaccctcgggccgaagctatcggaaacggtcaaggggaagctcacgctgggcgcc 408 Query: 395 cagatcctgcaggccggcgg 414 | |||||| ||||||||||| Sbjct: 409 cggatcctccaggccggcgg 428
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 403 gcaggccggcgggatcgagcgcg 425 ||||||||||||||||||||||| Sbjct: 2801370 gcaggccggcgggatcgagcgcg 2801348
>emb|AL626764.6| Mouse DNA sequence from clone RP23-94L18 on chromosome 4, complete sequence Length = 219582 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 377 aagctgagcctgggggcccagatcct 402 ||||||||||||| |||||||||||| Sbjct: 75661 aagctgagcctggtggcccagatcct 75636
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 ggacggccagtcgttcaggaaggccgacg 206 ||||||||||||| ||||| ||||||||| Sbjct: 1537754 ggacggccagtcgatcaggcaggccgacg 1537782
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 gtgagcaagctgagcagaagg 316 ||||||||||||||||||||| Sbjct: 215884 gtgagcaagctgagcagaagg 215904
>gb|AF026538.1|AF026538 Hordeum vulgare ABA-responsive protein mRNA, complete cds Length = 1326 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 ggggaagctgagcctgggggc 393 ||||||||||||||||||||| Sbjct: 718 ggggaagctgagcctgggggc 738
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 gtgagcaagctgagcagaagg 316 ||||||||||||||||||||| Sbjct: 214592 gtgagcaagctgagcagaagg 214612
>gb|BC049095.1| Mus musculus tripartite motif-containing 62, mRNA (cDNA clone MGC:61406 IMAGE:6416690), complete cds Length = 3216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggggcccagatcctgcagg 407 |||||||||||||||||||| Sbjct: 711 gggggcccagatcctgcagg 730
>ref|NM_178110.2| Mus musculus tripartite motif-containing 62 (Trim62), mRNA Length = 3216 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggggcccagatcctgcagg 407 |||||||||||||||||||| Sbjct: 711 gggggcccagatcctgcagg 730
>emb|AL079339.11|HSJ906P16 Human DNA sequence from clone RP5-906P16 on chromosome 20q13.12-13.2 Contains ESTs, STSs and GSSs, complete sequence Length = 86719 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 ctgagcctgggggcccagat 399 |||||||||||||||||||| Sbjct: 86027 ctgagcctgggggcccagat 86008
>dbj|AK048725.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230023D16 product:similar to CDNA FLJ10759 FIS, CLONE NT2RP3004617, WEAKLY SIMILAR TO ZINC-BINDING PROTEIN A33 [Homo sapiens], full insert sequence Length = 2726 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggggcccagatcctgcagg 407 |||||||||||||||||||| Sbjct: 1550 gggggcccagatcctgcagg 1569
>ref|XM_232757.3| PREDICTED: Rattus norvegicus similar to Tripartite motif-containing 62 (LOC313045), mRNA Length = 2414 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggggcccagatcctgcagg 407 |||||||||||||||||||| Sbjct: 1539 gggggcccagatcctgcagg 1558
>emb|AL607086.19| Mouse DNA sequence from clone RP23-269B7 on chromosome 4, complete sequence Length = 193830 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gggggcccagatcctgcagg 407 |||||||||||||||||||| Sbjct: 38966 gggggcccagatcctgcagg 38985 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,976,825 Number of Sequences: 3902068 Number of extensions: 2976825 Number of successful extensions: 58034 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57760 Number of HSP's gapped (non-prelim): 274 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
