ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58f04 |
|---|---|
| Clone Library Name | barley_pub |
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 74.7 bits (182), Expect = 1e-13 Identities = 31/78 (39%), Positives = 56/78 (71%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 RN +Y+G LDEKVSE +L+E+++Q G VV +++P+D+ T+ +GF F E+ EE A Sbjct: 9 RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68 Query: 297 YAVRLFSGLVRLHNRTLK 350 YA+++ + +++L+ + +K Sbjct: 69 YAIKILN-MIKLYGKPIK 85 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDL-HIPRDKETSRPKGFAFAEYETEEIAQYA 302 G +++GNLD +V E++LY+ G ++ + I RD ++ KGFAF + + E + A Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158 Query: 303 VRLFSG 320 + +G Sbjct: 159 LEAMNG 164
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 73.9 bits (180), Expect = 2e-13 Identities = 37/96 (38%), Positives = 65/96 (67%), Gaps = 1/96 (1%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 RN VY+G LDEKVSE +L+E+ +Q G VV+ H+P+D+ T + +G+ F E+ +EE A Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68 Query: 297 YAVRLFSGLVRLHNRTLKFAISGQDKASS-NANVTV 401 YA+++ + +++L+ + ++ +KAS+ N N+ V Sbjct: 69 YAIKIMN-MIKLYGKPIRV-----NKASAHNKNLDV 98 Score = 44.3 bits (103), Expect = 2e-04 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDL-HIPRDKETSRPKGFAFAEYETEEIAQYA 302 G ++IGNLD ++ E++LY+ G ++ I RD +T KG+AF + + + + A Sbjct: 99 GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA 158 Query: 303 VRLFSGLVRLHNR--TLKFAISGQDKASSNAN 392 + +G L NR T+ +A K + + Sbjct: 159 IEAMNGQY-LCNRPITVSYAFKKDSKGERHGS 189
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 71.2 bits (173), Expect = 1e-12 Identities = 32/86 (37%), Positives = 56/86 (65%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 RN +Y+GNLDEKV++ +L+E+ +Q G VV++HIPRD+ + GF F E+ E+ + Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66 Query: 297 YAVRLFSGLVRLHNRTLKFAISGQDK 374 YA ++ + V+L + ++ + QD+ Sbjct: 67 YACQILN-QVKLFGKPIRVNRASQDR 91 Score = 47.4 bits (111), Expect = 2e-05 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++GNLD V ERVLY+ +G++V E R KG+ F Y++ E A A+ Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157 Query: 306 RLFSGLVRLHNR-TLKFAISGQDKASSNANV 395 + ++ T+ +A + K + ++ Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGKGERHGDI 188
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 67.0 bits (162), Expect = 2e-11 Identities = 28/82 (34%), Positives = 54/82 (65%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETE 284 ++ + + G VY+GN+D ++++ LYE+ IQ+ V+ + P+DK +G+AF E+ + Sbjct: 1 MNYSADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQ 60 Query: 285 EIAQYAVRLFSGLVRLHNRTLK 350 AQYA+++ + VRL++R +K Sbjct: 61 GDAQYAIKIMNNTVRLYDRLIK 82
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 60.8 bits (146), Expect = 2e-09 Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 1/89 (1%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL+ KV+E +L+E+ Q G V+ + IP+DK+ +PK FAF ++ E YA+ L Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 315 SGLVRLHNRTLKFAI-SGQDKASSNANVT 398 +G ++L+ R +K SG A + +++ Sbjct: 71 NG-IKLYGRPIKIQFRSGSSHAPQDVSLS 98
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 60.5 bits (145), Expect = 2e-09 Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 1/89 (1%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL+ KV+E +L+E+ Q G V+ + IP+DK+ + K FAF ++ E YA+ L Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYAMNLL 70 Query: 315 SGLVRLHNRTLKFAI-SGQDKASSNANVT 398 +G ++L R +K SG AS +A+V+ Sbjct: 71 NG-IKLFGRPIKIQFRSGSSHASQDASVS 98
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 60.1 bits (144), Expect = 3e-09 Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL+ KV+E +L+E+ Q G V+ + IP+DK+ +PK FAF ++ E YA+ L Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 315 SGLVRLHNRTLKFAI-SGQDKASSNANVT 398 +G ++L R +K +G AS +++ Sbjct: 71 NG-IKLFGRPIKIQFRAGSSHASQEVSLS 98
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 56.6 bits (135), Expect = 3e-08 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 V++GNL+ +V E +LYE+ +Q G + + I +D+E +PK F F ++ E YA+ L Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70 Query: 315 SGLVRLHNRTLKFAIS-GQDKASSNAN 392 +G +RL+ R + G ++S AN Sbjct: 71 NG-IRLYGRPINVQYRFGSSRSSEPAN 96
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 54.7 bits (130), Expect = 1e-07 Identities = 24/63 (38%), Positives = 40/63 (63%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GN+ + +E L +I +VG VV + D+ET +PKG+ F EY+ +E A A+R Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 312 FSG 320 +G Sbjct: 77 LNG 79
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 54.7 bits (130), Expect = 1e-07 Identities = 24/63 (38%), Positives = 40/63 (63%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GN+ + +E L +I +VG VV + D+ET +PKG+ F EY+ +E A A+R Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 312 FSG 320 +G Sbjct: 77 LNG 79
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/63 (38%), Positives = 40/63 (63%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GN+ + +E L +I +VG VV + D+ET +PKG+ F EY+ +E A A+R Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 312 FSG 320 +G Sbjct: 77 LNG 79
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/63 (38%), Positives = 40/63 (63%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GN+ + +E L +I +VG VV + D+ET +PKG+ F EY+ +E A A+R Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 312 FSG 320 +G Sbjct: 77 LNG 79
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/63 (38%), Positives = 40/63 (63%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GN+ + +E L +I +VG VV + D+ET +PKG+ F EY+ +E A A+R Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 312 FSG 320 +G Sbjct: 77 LNG 79
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/63 (38%), Positives = 40/63 (63%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GN+ + +E L +I +VG VV + D+ET +PKG+ F EY+ +E A A+R Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 312 FSG 320 +G Sbjct: 77 LNG 79
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 53.5 bits (127), Expect = 3e-07 Identities = 24/57 (42%), Positives = 36/57 (63%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 +Y+G L ++V+ER+L I G + D+ +P D E+ R +GFAF EYE E A A+ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 53.1 bits (126), Expect = 3e-07 Identities = 24/57 (42%), Positives = 36/57 (63%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 +Y+G L E+V ++VL+ I G + D+ IP D ET + +GFAF E+E E A A+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 53.1 bits (126), Expect = 3e-07 Identities = 24/57 (42%), Positives = 36/57 (63%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 +Y+G L E+V ++VL+ I G + D+ IP D ET + +GFAF E+E E A A+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 49.3 bits (116), Expect = 5e-06 Identities = 28/75 (37%), Positives = 43/75 (57%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +Y+GNL ++ L EI + G V ++ I D+ T R +GFAF + E A+ A+ Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172 Query: 306 RLFSGLVRLHNRTLK 350 RLF G ++ RT+K Sbjct: 173 RLFDG-SQVGGRTVK 186
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/61 (39%), Positives = 36/61 (59%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A PG +YIG++ + + E L E Q G V L + R K+T KG+A+ EYE +E+A Sbjct: 37 ALTPG-VIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVA 95 Query: 294 Q 296 + Sbjct: 96 K 96
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/70 (34%), Positives = 44/70 (62%) Frame = +3 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NL ++++E L ++ ++GRV+ + I RDK T PKGFAF +E+ + A A+ + Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239 Query: 321 LVRLHNRTLK 350 +R+++ LK Sbjct: 240 -IRMYHMVLK 248
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/72 (30%), Positives = 44/72 (61%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G L +++E + + Q G +V++++ RDK+T + KGF F YE + AV F Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 315 SGLVRLHNRTLK 350 +G +++ RT++ Sbjct: 98 NG-IKIKGRTIR 108
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 47.4 bits (111), Expect = 2e-05 Identities = 21/65 (32%), Positives = 36/65 (55%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G VY+GNL V + L + + G+VV+ + D+++ R KGF F Y++ + Q A+ Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262 Query: 306 RLFSG 320 + G Sbjct: 263 KSLDG 267 Score = 33.1 bits (74), Expect = 0.37 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL V L ++ G V + + DK T R +GF F + + A + F Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 315 SG 320 +G Sbjct: 153 NG 154
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 47.0 bits (110), Expect = 2e-05 Identities = 22/63 (34%), Positives = 33/63 (52%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 ++Y+GNL VSE L + + G V + +P D+ET R +GF F E E + A+ Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 312 FSG 320 G Sbjct: 62 LDG 64
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 47.0 bits (110), Expect = 2e-05 Identities = 23/69 (33%), Positives = 44/69 (63%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A PG ++IG L+ + +E+ L + + GR+V++ + +D+ET++ +GFAF +E+ A Sbjct: 4 ADRPG-KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62 Query: 294 QYAVRLFSG 320 + A R +G Sbjct: 63 KDAARDMNG 71
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 VY+G+L +SE +Y Q G + + R K T KG+AF E+E+E++A+ Sbjct: 49 VYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAK 102
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 46.6 bits (109), Expect = 3e-05 Identities = 22/72 (30%), Positives = 44/72 (61%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G L +++E + + Q G +V++++ RDK+T + KGF F YE + AV F Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 315 SGLVRLHNRTLK 350 +G +++ RT++ Sbjct: 98 NG-IKIKGRTIR 108
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 46.2 bits (108), Expect = 4e-05 Identities = 22/66 (33%), Positives = 32/66 (48%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P C VY+GNL V L ++ + G+VV + D+ET R +GF F +E A Sbjct: 147 PSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDA 206 Query: 303 VRLFSG 320 + G Sbjct: 207 IAALDG 212 Score = 36.6 bits (83), Expect = 0.033 Identities = 21/62 (33%), Positives = 30/62 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL V L I G V + ++ET R +GF F T E A+ AV L Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELL 116 Query: 315 SG 320 +G Sbjct: 117 NG 118
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 46.2 bits (108), Expect = 4e-05 Identities = 28/86 (32%), Positives = 45/86 (52%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P VY+G++ +E + ++ VG V++L + D +T R KG+AF E+ E + A Sbjct: 16 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 75 Query: 303 VRLFSGLVRLHNRTLKFAISGQDKAS 380 VR +G +L +R LK S S Sbjct: 76 VRNLNG-YQLGSRFLKCGYSSNSDIS 100
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A PG ++IG L+ + +E+ L + + GR+V++ + +D+ET++ +GFAF E+ A Sbjct: 4 ADRPG-KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADA 62 Query: 294 QYAVRLFSG------LVRLHNRTLKFAISGQ 368 + A R +G +++ T F SG+ Sbjct: 63 KDAARDMNGKSLDGKAIKVEQATKPFFESGR 93
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 45.8 bits (107), Expect = 5e-05 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P +++GNL ++E+ + G VV + IP ET +PKGF + ++ E A+ A Sbjct: 265 PSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324 Query: 303 VRLFSG 320 + G Sbjct: 325 LDALQG 330
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 45.8 bits (107), Expect = 5e-05 Identities = 25/66 (37%), Positives = 34/66 (51%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 M+ G V++GN+ VSE+ + EI QVG V + D ET KG+ F E+ E Sbjct: 1 MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET 60 Query: 291 AQYAVR 308 AVR Sbjct: 61 TAMAVR 66
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 45.8 bits (107), Expect = 5e-05 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A +PG +YIG++ + E L E Q G V L + R K+T KG+A+ E+E +E+A Sbjct: 37 AVSPG-VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVA 95 Query: 294 Q 296 + Sbjct: 96 K 96
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 45.8 bits (107), Expect = 5e-05 Identities = 22/69 (31%), Positives = 43/69 (62%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A PG ++IG L+ + +E+ L + + GR+V++ + +D+ET++ +GFAF +E+ A Sbjct: 4 ADRPG-KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA 62 Query: 294 QYAVRLFSG 320 + R +G Sbjct: 63 KDVARDMNG 71
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Frame = +3 Query: 105 VSMARNPGCAV-----YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFA 269 VS AR G ++ Y+ NL +++ L I + G +V +I RDK T RP+G AF Sbjct: 200 VSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 259 Query: 270 EYETEEIAQYAVRLFSGLV 326 Y E AQ A+ + ++ Sbjct: 260 RYNKREEAQEAISALNNVI 278
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Frame = +3 Query: 105 VSMARNPGCAV-----YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFA 269 VS AR G ++ Y+ NL +++ L I + G +V +I RDK T RP+G AF Sbjct: 198 VSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 257 Query: 270 EYETEEIAQYAVRLFSGLV 326 Y E AQ A+ + ++ Sbjct: 258 RYNKREEAQEAISALNNVI 276
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 44.7 bits (104), Expect = 1e-04 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Frame = +3 Query: 105 VSMARNPGCAV-----YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFA 269 VS AR G ++ Y+ NL +++ L +I + G +V +I RDK T RP+G AF Sbjct: 175 VSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFV 234 Query: 270 EYETEEIAQYAVRLFSGLV 326 + E AQ A+ + ++ Sbjct: 235 RFNKREEAQEAISALNNVI 253
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VY+GNL V + L + + G+VVD + D+++ R +GF F Y + E A+ Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255 Query: 315 SGLVRLHNRTLK 350 G V L+ R ++ Sbjct: 256 DG-VDLNGRAIR 266 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/77 (28%), Positives = 37/77 (48%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQY 299 +P +++GNL L E+ + G V + + DK T R +GF F ++E + Sbjct: 84 SPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEA 143 Query: 300 AVRLFSGLVRLHNRTLK 350 A + F+G L R L+ Sbjct: 144 ACQQFNG-YELDGRALR 159
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 VYI NLD +++E+ ++ Q G + L + +D + +P+GF F Y E AQ AV Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAV 318 Score = 42.7 bits (99), Expect = 5e-04 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 ++Y+G LD V+E +L+E+ +G V + + RD T R G+A+ + E + A+ Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VY+GNL V + L E+ + G VVD + D+++ R +GF F Y + + A+ Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268 Query: 315 SGLVRLHNRTLK 350 +G V L R+++ Sbjct: 269 NG-VDLDGRSIR 279 Score = 36.6 bits (83), Expect = 0.033 Identities = 19/62 (30%), Positives = 31/62 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL V L + + G V + + DK T R +GF F T+E + A + F Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 315 SG 320 +G Sbjct: 149 NG 150
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 V+I NLDE + + LY+ G ++ + D+ SR G+ F +ET+E A A++ Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 38.9 bits (89), Expect = 0.007 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L V+E +LYE G ++ + + RD T R G+A+ ++ A+ A Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +YIGNL+ +++E + + + G VD+ + RD+ T +GFA+ +YE + AV Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 315 SGLVRLHNRTLK 350 +G ++ R LK Sbjct: 93 NGF-KIGGRALK 103
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/64 (32%), Positives = 34/64 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 V+I NLD + + LYE G ++ + D R KG+ F ++E EE AQ A+ Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 315 SGLV 326 +G++ Sbjct: 193 NGML 196
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VY+GNL V + L + + G+VVD + D+++ R +GF F Y + E A+ Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249 Query: 315 SGLVRLHNRTLK 350 G V L+ R ++ Sbjct: 250 DG-VDLNGRAIR 260 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/77 (28%), Positives = 37/77 (48%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQY 299 +P +++GNL L E+ + G V + + DK T R +GF F ++E + Sbjct: 84 SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEA 143 Query: 300 AVRLFSGLVRLHNRTLK 350 A + F+G L R L+ Sbjct: 144 ACQQFNG-YELDGRALR 159
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 43.9 bits (102), Expect = 2e-04 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I NLD + + L+E G ++ + D T R KG+ F ++E EE AQ A+ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 315 SGLV 326 +G++ Sbjct: 197 NGML 200 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/87 (26%), Positives = 46/87 (52%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQY 299 +P ++Y G+LD KV+E L+++ V VV + + RD + R G+A+ + A Sbjct: 46 HPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYR 104 Query: 300 AVRLFSGLVRLHNRTLKFAISGQDKAS 380 A+ + L +R ++ +S +D ++ Sbjct: 105 AMEALN-YTPLFDRPIRIMLSNRDPST 130
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 43.9 bits (102), Expect = 2e-04 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+ NL +++ L I + G++V +I RDK T P+G AF + E AQ A+ Sbjct: 166 LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISAL 225 Query: 315 SGLV 326 + ++ Sbjct: 226 NNVI 229
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Frame = +3 Query: 105 VSMARNPGCAV-----YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFA 269 VS AR G ++ Y+ NL +++ L +I + G +V +I RDK T +P+G AF Sbjct: 158 VSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFV 217 Query: 270 EYETEEIAQYAVRLFSGLV 326 + E AQ A+ + ++ Sbjct: 218 RFNKREEAQEAISALNNVI 236
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 43.5 bits (101), Expect = 3e-04 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 V+I NLD+ + + LY+ G ++ + D+ S KG+AF +ET+E A A+ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYAFVHFETQEAADKAIEKM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 42.4 bits (98), Expect = 6e-04 Identities = 23/62 (37%), Positives = 32/62 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VYI N E+V + L E+ Q G+ + + + RD + KGF F YE E A AV Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251 Query: 315 SG 320 +G Sbjct: 252 NG 253 Score = 40.4 bits (93), Expect = 0.002 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L V+E +LYE G V+ + + RD T R G+A+ ++ A+ A Sbjct: 9 PMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 32.3 bits (72), Expect = 0.63 Identities = 26/96 (27%), Positives = 46/96 (47%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 ++R G +YI NLD+ + + L + G + + E R KGF F + + E Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEE 345 Query: 291 AQYAVRLFSGLVRLHNRTLKFAISGQDKASSNANVT 398 A AV +G + + ++ L A++ Q K A++T Sbjct: 346 ATKAVTEMNGRI-VGSKPLYVALA-QRKEERKAHLT 379
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 43.5 bits (101), Expect = 3e-04 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 V+I NLDE + + LY+ G ++ + D+ SR G+ F +ET E A A++ Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 37.0 bits (84), Expect = 0.025 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++YIG+L V+E +LYE G ++ + + RD T R +A+ ++ A+ A Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/70 (25%), Positives = 31/70 (44%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 R G +Y+ NLD+ + + L + + G + + E KGF F + + E A Sbjct: 290 RYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEAT 347 Query: 297 YAVRLFSGLV 326 AV +G + Sbjct: 348 KAVTEMNGRI 357
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 43.5 bits (101), Expect = 3e-04 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VY+GNL V + L E+ + G VVD + D+++ R +GF F Y + + A+ Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269 Query: 315 SGL 323 +G+ Sbjct: 270 NGI 272 Score = 35.0 bits (79), Expect = 0.097 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL V L + + G V + + DK + R +GF F T+E + A + F Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 315 SG 320 +G Sbjct: 150 NG 151
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/59 (37%), Positives = 33/59 (55%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 V++ L +++ R LY+ Q G V D I RDK + R KG A+ E+ E+ Q A+ L Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/74 (31%), Positives = 39/74 (52%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 C +Y+GNL +E +YE+ + G + + + DK GF F EY + A+ A+R Sbjct: 40 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 99 Query: 309 LFSGLVRLHNRTLK 350 +G RL +R ++ Sbjct: 100 YING-TRLDDRIIR 112
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/74 (31%), Positives = 39/74 (52%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 C +Y+GNL +E +YE+ + G + + + DK GF F EY + A+ A+R Sbjct: 40 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 99 Query: 309 LFSGLVRLHNRTLK 350 +G RL +R ++ Sbjct: 100 YING-TRLDDRIIR 112
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/74 (31%), Positives = 39/74 (52%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 C +Y+GNL +E +YE+ + G + + + DK GF F EY + A+ A+R Sbjct: 40 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 99 Query: 309 LFSGLVRLHNRTLK 350 +G RL +R ++ Sbjct: 100 YING-TRLDDRIIR 112
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 43.5 bits (101), Expect = 3e-04 Identities = 17/64 (26%), Positives = 39/64 (60%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++ NLD+ ++ + LY+ + G ++ ++ D+ S KG+ F +ET E A+ A++ Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS--KGYGFVHFETHEAAERAIKKM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L V+E +LYE G ++ + I RD TS +A+ ++ + A++A Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+ NLD+ + + L + G + + E R KGF F + + E A AV Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 315 SGLV 326 +G + Sbjct: 354 NGRI 357
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/59 (35%), Positives = 35/59 (59%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +PG +Y+G+L + E L Q G+V+ L + R K+T KG+ F E+E +E+A+ Sbjct: 43 SPG-VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAK 100
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/64 (32%), Positives = 34/64 (53%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 C VY+G++ ++ E + G + +++ D T + KGFAF EYE E AQ A+ Sbjct: 130 CRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALE 189 Query: 309 LFSG 320 +G Sbjct: 190 QMNG 193
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = +3 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NL + S L + + GRV D++IPRD+ T +GFAF + + A+ A+ G Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77 Query: 321 LVRLHNRTLK 350 V L R L+ Sbjct: 78 AV-LDGRELR 86
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 43.1 bits (100), Expect = 4e-04 Identities = 19/62 (30%), Positives = 33/62 (53%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQY 299 N ++Y+G+L+ VSE LY+I +G V + + RD T G+A+ + E + Sbjct: 34 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 93 Query: 300 AV 305 A+ Sbjct: 94 AI 95 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/57 (28%), Positives = 30/57 (52%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 +Y+ N++ + ++ E+ + G +V + +D + + KGF F YE E A AV Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAV 275
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = +3 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NL + S L + + GRV D++IPRD+ T +GFAF + + A+ A+ G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 321 LVRLHNRTLK 350 V L R L+ Sbjct: 77 AV-LDGRELR 85
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = +3 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NL + S L + + GRV D++IPRD+ T +GFAF + + A+ A+ G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 321 LVRLHNRTLK 350 V L R L+ Sbjct: 77 AV-LDGRELR 85
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = +3 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NL + S L + + GRV D++IPRD+ T +GFAF + + A+ A+ G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 321 LVRLHNRTLK 350 V L R L+ Sbjct: 77 AV-LDGRELR 85
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = +3 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NL + S L + + GRV D++IPRD+ T +GFAF + + A+ A+ G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 321 LVRLHNRTLK 350 V L R L+ Sbjct: 77 AV-LDGRELR 85
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 42.7 bits (99), Expect = 5e-04 Identities = 24/91 (26%), Positives = 44/91 (48%) Frame = +3 Query: 108 SMARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 S N C V++G L V ++ L + + G +V + D ++ R KG+ + ++ET E Sbjct: 256 SQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315 Query: 288 IAQYAVRLFSGLVRLHNRTLKFAISGQDKAS 380 A+ AV +G + R + +S A+ Sbjct: 316 AAKAAVAA-NGTKEIDGRMVNLDLSNPRPAN 345 Score = 32.7 bits (73), Expect = 0.48 Identities = 16/63 (25%), Positives = 29/63 (46%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P V++GNL +E L G + + +P D ++ R KGF + + + A+ Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423 Query: 303 VRL 311 V + Sbjct: 424 VEM 426
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 42.7 bits (99), Expect = 5e-04 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 PG VY+ +L + E ++ Q G V + R K T KG+AF E+E+E++A+ Sbjct: 44 PG-VVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAK 100
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 42.7 bits (99), Expect = 5e-04 Identities = 26/73 (35%), Positives = 36/73 (49%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +VY+GN+D V+ L G V + I DK T PKGFA+ E+ + A+ L Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLL 115 Query: 312 FSGLVRLHNRTLK 350 + LH R LK Sbjct: 116 NGSM--LHERPLK 126
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 42.7 bits (99), Expect = 5e-04 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VYIGNL + V+ +L + + G+V+ + R TS+ GF F + +EE + A++ Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245 Query: 315 SGLV 326 + V Sbjct: 246 NNSV 249
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 42.4 bits (98), Expect = 6e-04 Identities = 22/80 (27%), Positives = 40/80 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G L + E L E +Q G VV + + DK T + +GFAF E++ + A+ Sbjct: 125 LFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKK 184 Query: 315 SGLVRLHNRTLKFAISGQDK 374 ++ + +K +I DK Sbjct: 185 QHAIKYVHVDVKKSIYNLDK 204 Score = 35.4 bits (80), Expect = 0.074 Identities = 24/89 (26%), Positives = 39/89 (43%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L +E L Q G+VVD+ + RD T R +GF F Y + A Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENR 93 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 ++ K A+ ++ S N++V Sbjct: 94 PHIIDGKTVEAKRALPRPERESRETNISV 122
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/64 (28%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I NLD+ + + LY+ G ++ + D+ S KG+ F +ET+E A+ A+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L V+E +LYE G ++ + + RD T R G+A+ ++ A+ A Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/96 (26%), Positives = 44/96 (45%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 + R G +Y+ NLD+ + + L + G + + E R KGF F + + E Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEE 345 Query: 291 AQYAVRLFSGLVRLHNRTLKFAISGQDKASSNANVT 398 A AV +G + + + L A++ Q K A++T Sbjct: 346 ATKAVTEMNGRI-VATKPLYVALA-QRKEERQAHLT 379
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/64 (28%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I NLD+ + + LY+ G ++ + D+ S KG+ F +ET+E A+ A+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L V+E +LYE G ++ + + RD T R G+A+ ++ A+ A Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/96 (26%), Positives = 44/96 (45%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 + R G +Y+ NLD+ + + L + G + + E R KGF F + + E Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEE 345 Query: 291 AQYAVRLFSGLVRLHNRTLKFAISGQDKASSNANVT 398 A AV +G + + + L A++ Q K A++T Sbjct: 346 ATKAVTEMNGRI-VATKPLYVALA-QRKEERQAHLT 379
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/64 (28%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I NLD+ + + LY+ G ++ + D+ S KG+ F +ET+E A+ A+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L V+E +LYE G ++ + + RD T R G+A+ ++ A+ A Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/96 (26%), Positives = 44/96 (45%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 + R G +Y+ NLD+ + + L + G + + E R KGF F + + E Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEE 345 Query: 291 AQYAVRLFSGLVRLHNRTLKFAISGQDKASSNANVT 398 A AV +G + + + L A++ Q K A++T Sbjct: 346 ATKAVTEMNGRI-VATKPLYVALA-QRKEERQAHLT 379
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.4 bits (98), Expect = 6e-04 Identities = 18/64 (28%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I NLD+ + + LY+ G ++ + D+ S KG+ F +ET+E A+ A+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIEKM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L V+E +LYE G ++ + + RD T R G+A+ ++ A+ A Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/96 (26%), Positives = 44/96 (45%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 + R G +Y+ NLD+ + + L + G + + E R KGF F + + E Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEE 345 Query: 291 AQYAVRLFSGLVRLHNRTLKFAISGQDKASSNANVT 398 A AV +G + + + L A++ Q K A++T Sbjct: 346 ATKAVTEMNGRI-VATKPLYVALA-QRKEERQAHLT 379
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 42.0 bits (97), Expect = 8e-04 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Frame = +3 Query: 105 VSMARNPGCAV-----YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFA 269 VS AR G ++ Y+ NL +++ L I + G +V +I RDK T +P+G AF Sbjct: 183 VSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFV 242 Query: 270 EYETEEIAQYAVRLFSGLV 326 + E AQ A+ + ++ Sbjct: 243 RFNKREEAQEAISALNNVI 261
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 42.0 bits (97), Expect = 8e-04 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L E Q G++ + I D+ + + +GFAF +E + V Sbjct: 107 IFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQK 166 Query: 315 SGLVRLHNRTLKFAISGQDKAS 380 V HN ++ A+S Q+ AS Sbjct: 167 YHTVNNHNSQVRKALSKQEMAS 188 Score = 35.4 bits (80), Expect = 0.074 Identities = 24/89 (26%), Positives = 41/89 (46%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L E Q G + D + RD + R +GF F Y + + A+ Sbjct: 16 LFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTAR 75 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D + A++TV Sbjct: 76 PHKVDGRVVEPKRAVSREDSSRPGAHLTV 104
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = +3 Query: 108 SMARNPGCAVYIGNLDEKVSERVLYE-ILIQVGRVVDLHIPRDKETSRPKGFAFAEYETE 284 S R+ C + I ++E E L E +L + + + R+KET + +G AF + +E Sbjct: 184 SRERDDMCTLKIMQVNENADENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSE 243 Query: 285 EIAQYAVRLFSG 320 E+A+ A+R G Sbjct: 244 EVAEQALRFLDG 255
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 42.0 bits (97), Expect = 8e-04 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSR---PKGFAFAEYETEEIA 293 PGC ++I NL+ +E L E+ +VG V I + K + GF F EY E A Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787 Query: 294 QYAVRLFSGLV 326 Q A++ G V Sbjct: 788 QKALKQLQGHV 798 Score = 37.0 bits (84), Expect = 0.025 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++ NL +E L ++ + G + +LH P D T +PKGFAF + E +AV+ + Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE---HAVKAY 460 Query: 315 S 317 S Sbjct: 461 S 461
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/85 (22%), Positives = 43/85 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + G++ + + D+++ + +GFAF ++ + V Sbjct: 120 IFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 179 Query: 315 SGLVRLHNRTLKFAISGQDKASSNA 389 + LHN +K A+S Q+ +++A Sbjct: 180 YHTINLHNCEVKKALSKQEMQTASA 204 Score = 39.3 bits (90), Expect = 0.005 Identities = 26/89 (29%), Positives = 42/89 (47%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L E Q G++ D + RD +T R +GF F Y E ++ Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSAR 88 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A A++TV Sbjct: 89 PHKVDGRVVEPKRAVSREDSARPGAHLTV 117
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/64 (29%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 V+I NLD+ + + LY+ G ++ + D+ SR G+ F +ET+E A A++ Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A P ++YIG+L V+E +LYE G ++ + + RD T R G+A+ ++ A Sbjct: 6 AEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADA 65 Query: 294 QYAV 305 + A+ Sbjct: 66 ERAL 69
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/72 (30%), Positives = 37/72 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+G+L ++E +L I GR+ + + D ET R KG+ F + E A+ A+ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 315 SGLVRLHNRTLK 350 +G L R +K Sbjct: 312 NGF-ELAGRPMK 322
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/72 (30%), Positives = 37/72 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+G+L ++E +L I GR+ + + D ET R KG+ F + E A+ A+ Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 315 SGLVRLHNRTLK 350 +G L R +K Sbjct: 312 NGF-ELAGRPMK 322
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 41.6 bits (96), Expect = 0.001 Identities = 15/52 (28%), Positives = 33/52 (63%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 +++G L ++S+ + Q G +V++ +P DK+ S+ KGF F +++E++ Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQV 189 Score = 32.3 bits (72), Expect = 0.63 Identities = 13/51 (25%), Positives = 28/51 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 +++G L + +E+ L + + G + +++ D +T R +GFAF + E Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE 108
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/74 (32%), Positives = 38/74 (51%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 C +Y+GNL +E ++E+ + G V + + DK GF F EY T A A+R Sbjct: 32 CTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGTAMR 91 Query: 309 LFSGLVRLHNRTLK 350 +G RL +R ++ Sbjct: 92 FING-TRLDDRIVR 104
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +Y+GNL V + L + + G+VV+ + D+++ R KGF F + + Q A+ Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315 Query: 306 RLFSG 320 +G Sbjct: 316 NSLNG 320 Score = 37.4 bits (85), Expect = 0.019 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQY 299 +P +++GNL V L ++ G V + + DK T R +GF F T + Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155 Query: 300 AVRLFSG 320 A + F+G Sbjct: 156 AAQQFNG 162
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/64 (28%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I NLD+ + + LY+ G ++ + D+ S KG+ F +ET+E A+ A+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIDKM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L V+E +LYE G ++ + + RD T R G+A+ ++ A+ A Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 30.8 bits (68), Expect = 1.8 Identities = 25/96 (26%), Positives = 44/96 (45%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 + R G +Y+ NLD+ + + L + G + + E R KGF F + + E Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVM--MEGGRSKGFGFVCFSSPEE 345 Query: 291 AQYAVRLFSGLVRLHNRTLKFAISGQDKASSNANVT 398 A AV +G + + + L A++ Q K A++T Sbjct: 346 ATKAVTEMNGRI-VATKPLYVALA-QRKEERQAHLT 379
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/64 (28%), Positives = 36/64 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I NLD+ + + LY+ G ++ + D+ S KG+ F +ET+E A+ A+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIDKM 158 Query: 315 SGLV 326 +G++ Sbjct: 159 NGML 162 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P ++Y+G+L + V+E +LYE G ++ + + RD T R G+A+ ++ A+ A Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68 Query: 303 V 305 + Sbjct: 69 L 69 Score = 32.0 bits (71), Expect = 0.82 Identities = 25/96 (26%), Positives = 45/96 (46%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 + R G +Y+ NLD+ + + L + + G + + E R KGF F + + E Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM--MEGGRSKGFGFVCFSSPEE 345 Query: 291 AQYAVRLFSGLVRLHNRTLKFAISGQDKASSNANVT 398 A AV +G + + + L A++ Q K A++T Sbjct: 346 ATKAVTEMNGRI-VATKPLYVALA-QRKEERQAHLT 379
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 41.2 bits (95), Expect = 0.001 Identities = 18/62 (29%), Positives = 37/62 (59%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L+ + +E L + + GR+ ++ + +D+ET R +GF F +E + A+ A+ Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 315 SG 320 +G Sbjct: 67 NG 68
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 41.2 bits (95), Expect = 0.001 Identities = 20/73 (27%), Positives = 37/73 (50%) Frame = +3 Query: 108 SMARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 S+ R+ V+I NLD + + +Y+ G ++ + D E KG+ F +ETEE Sbjct: 83 SLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEE 141 Query: 288 IAQYAVRLFSGLV 326 A ++ +G++ Sbjct: 142 AANTSIDKVNGML 154 Score = 38.5 bits (88), Expect = 0.009 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VY+ N E + L E G++ + KE + KGF F +ET E A+ AV+ Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 315 SG 320 +G Sbjct: 244 NG 245 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 ++Y+G+L + V+E L++ G V+ + + RD T R G+A+ ++ A+ A+ Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62 Query: 312 FS-GLVRLHNRTLKFAISGQDKASSNANV 395 + LVR N+ ++ S +D + + V Sbjct: 63 MNFDLVR--NKPIRIMWSQRDPSLRRSGV 89 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +Y+ NLD+ + + L G + + D+E R KGF F + A AV Sbjct: 286 GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAV 344 Query: 306 RLFSGLV 326 +G V Sbjct: 345 TELNGRV 351
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/62 (30%), Positives = 40/62 (64%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G+L+++ +E+ + EI +Q G V D+++ RD E + +G F +Y ++E A A+ Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGL 271 Query: 315 SG 320 +G Sbjct: 272 NG 273 Score = 36.2 bits (82), Expect = 0.043 Identities = 18/76 (23%), Positives = 37/76 (48%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 R+ +++G++ +E + Q G V+++ + +DK T + +G F +Y T + A Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175 Query: 297 YAVRLFSGLVRLHNRT 344 A+R + L T Sbjct: 176 RAIRALHNQITLPGGT 191
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/88 (23%), Positives = 41/88 (46%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G L ++ ++ E Q G + D+ + RD T R +GF F + + A++ Sbjct: 25 IFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQR 84 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVT 398 ++ K A+ DK S +NV+ Sbjct: 85 PHIIDGKTVDPKRAVPRDDKNRSESNVS 112 Score = 38.9 bits (89), Expect = 0.007 Identities = 21/86 (24%), Positives = 39/86 (45%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+ + E +E +L E + G V I DK T +P+GF F ++ + V Sbjct: 116 LYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQK 175 Query: 315 SGLVRLHNRTLKFAISGQDKASSNAN 392 S +V H ++ +S + + + N Sbjct: 176 SHMVNGHRCDVRKGLSKDEMSKAQMN 201
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/86 (24%), Positives = 44/86 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + Q G++ + I D+ + + +GFAF ++ + V Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 165 Query: 315 SGLVRLHNRTLKFAISGQDKASSNAN 392 V HN ++ A+S Q+ AS++++ Sbjct: 166 YHTVNGHNCEVRKALSKQEMASASSS 191 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/89 (29%), Positives = 39/89 (43%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L Q G + D + RD T R +GF F Y T E A+ Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A++TV Sbjct: 75 PHKVDGRVVEPKRAVSREDSQRPGAHLTV 103
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/70 (27%), Positives = 41/70 (58%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 MA + G +++G L +E+ L ++ + G++ ++ + +D+ET R +GF F +E + Sbjct: 1 MASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59 Query: 291 AQYAVRLFSG 320 A+ A+ +G Sbjct: 60 AKDAMMAMNG 69
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/70 (27%), Positives = 41/70 (58%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 MA + G +++G L +E+ L ++ + G++ ++ + +D+ET R +GF F +E + Sbjct: 1 MASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59 Query: 291 AQYAVRLFSG 320 A+ A+ +G Sbjct: 60 AKDAMMAMNG 69
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/70 (27%), Positives = 41/70 (58%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 MA + G +++G L +E+ L ++ + G++ ++ + +D+ET R +GF F +E + Sbjct: 1 MASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59 Query: 291 AQYAVRLFSG 320 A+ A+ +G Sbjct: 60 AKDAMMAMNG 69
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/86 (24%), Positives = 44/86 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + Q G++ + I D+ + + +GFAF ++ + V Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 165 Query: 315 SGLVRLHNRTLKFAISGQDKASSNAN 392 V HN ++ A+S Q+ AS++++ Sbjct: 166 YHTVNGHNCEVRKALSKQEMASASSS 191 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/89 (29%), Positives = 39/89 (43%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L Q G + D + RD T R +GF F Y T E A+ Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A++TV Sbjct: 75 PHKVDGRVVEPKRAVSREDSQRPGAHLTV 103
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/86 (24%), Positives = 44/86 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + Q G++ + I D+ + + +GFAF ++ + V Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 165 Query: 315 SGLVRLHNRTLKFAISGQDKASSNAN 392 V HN ++ A+S Q+ AS++++ Sbjct: 166 YHTVNGHNCEVRKALSKQEMASASSS 191 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/89 (29%), Positives = 39/89 (43%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L Q G + D + RD T R +GF F Y T E A+ Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A++TV Sbjct: 75 PHKVDGRVVEPKRAVSREDSQRPGAHLTV 103
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GNL KV E + + + G ++ + I RDK T KGF + +E + A++L Sbjct: 288 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKL 347
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 40.4 bits (93), Expect = 0.002 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSR---PKGFAFAEYETEEIA 293 PGC ++I NL+ +E L + +VG + I + K + GF F EY+ E A Sbjct: 720 PGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQA 779 Query: 294 QYAVRLFSG--------LVRLHNRTLKFAISGQDK 374 Q A++ G VR+ R K A++ K Sbjct: 780 QKALKQLQGHTVDGHKLEVRISERATKPALTSTRK 814 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/64 (34%), Positives = 31/64 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++ NL SE L ++ G + +LH P D T +PKGFAF + E A A Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461 Query: 315 SGLV 326 G V Sbjct: 462 DGQV 465
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 40.4 bits (93), Expect = 0.002 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQY 299 N G V+I NL E L E+L Q G + + I +T KG AFA++ T+E AQ Sbjct: 331 NEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQK 390 Query: 300 AVRLFS-----GLVRLHNRTLK 350 + S G ++L R LK Sbjct: 391 CLLAASPENEAGGLKLDGRQLK 412 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/61 (24%), Positives = 27/61 (44%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++G L L E+ QVG V + +K + +GF + + E Q A+ Sbjct: 2 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 306 R 308 + Sbjct: 62 K 62
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/79 (26%), Positives = 41/79 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G L + E L E G++V ++I DK+T + +GFAF E++ + + Sbjct: 117 LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQK 176 Query: 315 SGLVRLHNRTLKFAISGQD 371 + ++ +K AI+ QD Sbjct: 177 THSIKNKTLDVKKAIAKQD 195 Score = 36.6 bits (83), Expect = 0.033 Identities = 24/89 (26%), Positives = 40/89 (44%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG LD + ++ L + G +VD+ + +D +T R +GF F Y + A Sbjct: 26 LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNAR 85 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 + K A+ Q+ S NA TV Sbjct: 86 PHKIDGRTVEPKRAVPRQEIDSPNAGATV 114
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/70 (27%), Positives = 41/70 (58%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 MA + G +++G L +E+ L ++ + G++ ++ + +D+ET R +GF F +E + Sbjct: 1 MASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59 Query: 291 AQYAVRLFSG 320 A+ A+ +G Sbjct: 60 AKDAMMAMNG 69
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/70 (27%), Positives = 41/70 (58%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 MA + G +++G L +E+ L ++ + G++ ++ + +D+ET R +GF F +E + Sbjct: 1 MASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59 Query: 291 AQYAVRLFSG 320 A+ A+ +G Sbjct: 60 AKDAMMAMNG 69
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/62 (37%), Positives = 32/62 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VY+G L + + L EI + GR+ + + R RP GFAF EY+ A+ AVR Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR-----RPPGFAFVEYDDVRDAEDAVRAL 59 Query: 315 SG 320 G Sbjct: 60 DG 61
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 40.0 bits (92), Expect = 0.003 Identities = 21/86 (24%), Positives = 43/86 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + Q G++ + I D+ + + +GFAF ++ V Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQK 165 Query: 315 SGLVRLHNRTLKFAISGQDKASSNAN 392 V HN ++ A+S Q+ AS++++ Sbjct: 166 YHTVNGHNCEVRKALSKQEMASASSS 191 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/89 (29%), Positives = 39/89 (43%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L Q G + D + RD T R +GF F Y T E A+ Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNAR 74 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A++TV Sbjct: 75 PHKVDGRVVEPKRAVSREDSQRPGAHLTV 103
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/80 (28%), Positives = 40/80 (50%) Frame = +3 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 I NL + + L + G + D+HIPRDK + + KGF F + A++A+ G Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 321 LVRLHNRTLKFAISGQDKAS 380 + + R L+ ++ D+ S Sbjct: 83 KL-VDGRELRVTLAKYDRPS 101
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+ NLD VSE +L E + G++V L I +D E +G+AF ++ E A+ A Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETV 261 Query: 315 SG 320 +G Sbjct: 262 NG 263 Score = 31.2 bits (69), Expect = 1.4 Identities = 12/58 (20%), Positives = 31/58 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 ++Y+G+L V+E +LY+ + + + + +D + R + +A + + + A A+ Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/64 (29%), Positives = 35/64 (54%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++G + + E L + + G + DL + D T +G+AF + T+E AQ AV Sbjct: 71 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 130 Query: 306 RLFS 317 +L++ Sbjct: 131 KLYN 134 Score = 32.7 bits (73), Expect = 0.48 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLDE-KVSERVLYEILIQVGRVVDL---HIPRDKETSRPKGFAFAE 272 +S+A N +++G++ + K E++L E + D+ H P DK+ +R GF F E Sbjct: 148 ISVANN---RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR--GFCFLE 202 Query: 273 YETEE-IAQYAVRLFSGLVRL 332 YE + AQ RL SG V++ Sbjct: 203 YEDHKTAAQARRRLMSGKVKV 223
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/64 (29%), Positives = 35/64 (54%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++G + + E L + + G + DL + D T +G+AF + T+E AQ AV Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220 Query: 306 RLFS 317 +L++ Sbjct: 221 KLYN 224 Score = 32.7 bits (73), Expect = 0.48 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLDE-KVSERVLYEILIQVGRVVDL---HIPRDKETSRPKGFAFAE 272 +S+A N +++G++ + K E++L E + D+ H P DK+ +R GF F E Sbjct: 238 ISVANN---RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR--GFCFLE 292 Query: 273 YETEE-IAQYAVRLFSGLVRL 332 YE + AQ RL SG V++ Sbjct: 293 YEDHKTAAQARRRLMSGKVKV 313
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/64 (29%), Positives = 35/64 (54%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++G + + E L + + G + DL + D T +G+AF + T+E AQ AV Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220 Query: 306 RLFS 317 +L++ Sbjct: 221 KLYN 224 Score = 32.7 bits (73), Expect = 0.48 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLDE-KVSERVLYEILIQVGRVVDL---HIPRDKETSRPKGFAFAE 272 +S+A N +++G++ + K E++L E + D+ H P DK+ +R GF F E Sbjct: 238 ISVANN---RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR--GFCFLE 292 Query: 273 YETEE-IAQYAVRLFSGLVRL 332 YE + AQ RL SG V++ Sbjct: 293 YEDHKTAAQARRRLMSGKVKV 313
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +3 Query: 138 YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFS 317 ++G L +R L Q G V+D I D+ET R +GF F ++ E+ + A+ + Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 318 G 320 G Sbjct: 71 G 71
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYE 278 +++G + E++ E L + Q G VV I DKET + +GFAF E++ Sbjct: 110 LFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFD 157 Score = 37.4 bits (85), Expect = 0.019 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 ++IG LD + ++ L + Q G +VD+ + +D +T R +GF F Y Sbjct: 19 LFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 65
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/66 (30%), Positives = 31/66 (46%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P VY+GNL V L ++ + G+VV+ + D+ET R +GF F + A Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301 Query: 303 VRLFSG 320 + G Sbjct: 302 ISALDG 307 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/61 (27%), Positives = 32/61 (52%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL V+ + L + Q G V + ++ET + +GF F + + A+ AV F Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211 Query: 315 S 317 + Sbjct: 212 N 212
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/84 (26%), Positives = 43/84 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+GN+ + + L ++ + G+VV + D+ET R +GF F +E A+ Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291 Query: 315 SGLVRLHNRTLKFAISGQDKASSN 386 G L RT++ ++ +D++ N Sbjct: 292 DG-QSLDGRTIRVNVA-EDRSRRN 313 Score = 33.9 bits (76), Expect = 0.22 Identities = 17/61 (27%), Positives = 31/61 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL V L + Q G V + +++T + +GF F T E A+ AV ++ Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197 Query: 315 S 317 + Sbjct: 198 N 198
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 R P +++I N+ + L + G +VD++IP D T RP+GFA+ ++E A+ Sbjct: 6 RPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAE 65 Query: 297 YAV 305 A+ Sbjct: 66 DAL 68
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/65 (26%), Positives = 36/65 (55%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++ + E+ +E +++ + G + ++H+ D+ T KG+ EYET + AQ A+ Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131 Query: 306 RLFSG 320 +G Sbjct: 132 EGLNG 136
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/65 (26%), Positives = 36/65 (55%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++ + E+ +E +++ + G + ++H+ D+ T KG+ EYET + AQ A+ Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131 Query: 306 RLFSG 320 +G Sbjct: 132 EGLNG 136
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 R+ + + NL + E L ++ + G + +++ +DKET R KGFAF Y + A Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 39.3 bits (90), Expect = 0.005 Identities = 16/48 (33%), Positives = 30/48 (62%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYE 278 +++G L + E+ + + G +VD++I DKET + +GFAF E++ Sbjct: 124 LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFD 171 Score = 38.9 bits (89), Expect = 0.007 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG LD + ++ L + G +VD+ + +D T R +GF F Y + A + Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK-- 90 Query: 315 SGLVRLHNRTL--KFAISGQDKASSNANVTV 401 S ++ R + K A+ QD S NA TV Sbjct: 91 SRPHKIDGRVVEPKRAVPRQDIDSPNAGATV 121
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/63 (28%), Positives = 35/63 (55%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 R P ++++ N+ + L + G +VD+++P D T RP+GFA+ ++E A+ Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65 Query: 297 YAV 305 A+ Sbjct: 66 DAL 68
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/63 (28%), Positives = 35/63 (55%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 R P ++++ N+ + L + G +VD+++P D T RP+GFA+ ++E A+ Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65 Query: 297 YAV 305 A+ Sbjct: 66 DAL 68
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/85 (21%), Positives = 42/85 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + + G++ + + D+++ + +GFAF ++ + V Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187 Query: 315 SGLVRLHNRTLKFAISGQDKASSNA 389 + HN +K A+S Q+ S+ + Sbjct: 188 YHTINGHNCEVKKALSKQEMQSAGS 212 Score = 35.8 bits (81), Expect = 0.057 Identities = 25/89 (28%), Positives = 40/89 (44%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L E + G + D + RD +T R +GF F Y E A+ Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A++TV Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTV 125
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/80 (25%), Positives = 44/80 (55%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 ++Y+G+LD V++ L++ Q+G VV + + RD T R G+ + + + A A++ Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 312 FSGLVRLHNRTLKFAISGQD 371 + + L+ + ++ S +D Sbjct: 97 LN-YIPLYGKPIRVMYSHRD 115
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 39.3 bits (90), Expect = 0.005 Identities = 26/89 (29%), Positives = 42/89 (47%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L E Q G++ D + RD +T R +GF F Y E ++ Sbjct: 29 LFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSAR 88 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A A++TV Sbjct: 89 PHKVDGRVVEPKRAVSREDSARPGAHLTV 117 Score = 38.5 bits (88), Expect = 0.009 Identities = 18/85 (21%), Positives = 42/85 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + G++ + + D+++ + +GFAF ++ + V Sbjct: 120 IFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 179 Query: 315 SGLVRLHNRTLKFAISGQDKASSNA 389 + HN +K A+S Q+ +++A Sbjct: 180 YHTINGHNCEVKKALSKQEMQTASA 204
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/85 (21%), Positives = 42/85 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + + G++ + + D+++ + +GFAF ++ + V Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187 Query: 315 SGLVRLHNRTLKFAISGQDKASSNA 389 + HN +K A+S Q+ S+ + Sbjct: 188 YHTINGHNCEVKKALSKQEMQSAGS 212 Score = 35.8 bits (81), Expect = 0.057 Identities = 25/89 (28%), Positives = 40/89 (44%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L E + G + D + RD +T R +GF F Y E A+ Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A++TV Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTV 125
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/85 (21%), Positives = 42/85 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + + G++ + + D+++ + +GFAF ++ + V Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQK 187 Query: 315 SGLVRLHNRTLKFAISGQDKASSNA 389 + HN +K A+S Q+ S+ + Sbjct: 188 YHTINGHNCEVKKALSKQEMQSAGS 212 Score = 35.8 bits (81), Expect = 0.057 Identities = 25/89 (28%), Positives = 40/89 (44%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L E + G + D + RD +T R +GF F Y E A+ Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A++TV Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTV 125
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 39.3 bits (90), Expect = 0.005 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +3 Query: 138 YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFS 317 ++G L ER L Q G +VD I D+ET R +GF F ++ E+ + A+ + Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 318 G 320 G Sbjct: 71 G 71
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 39.3 bits (90), Expect = 0.005 Identities = 19/79 (24%), Positives = 39/79 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L E + G++ + I DK++ + +GFAF ++ + V Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQK 161 Query: 315 SGLVRLHNRTLKFAISGQD 371 + HN ++ A+S Q+ Sbjct: 162 YHTINGHNAEVRKALSKQE 180 Score = 32.3 bits (72), Expect = 0.63 Identities = 22/89 (24%), Positives = 38/89 (42%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + +E L Q G + D + RD + R +GF F + A+ Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATR 70 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 + K A++ ++ A A+VTV Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV 99
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+GNL SE LYE+ + G + + + D+ P GF F Y+T + A A++ Sbjct: 48 IYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQEALAALKYL 107 Query: 315 S 317 S Sbjct: 108 S 108
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = +3 Query: 138 YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFS 317 ++G L +R L Q G V+D I D+ET R +GF F ++ E+ + A+ + Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 318 G 320 G Sbjct: 71 G 71
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 38.9 bits (89), Expect = 0.007 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++ ++ E+ E + E G + ++H+ D+ T KG+A EYET + A A Sbjct: 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 131 Query: 306 RLFSG 320 +G Sbjct: 132 EALNG 136
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 + + NL E E L E+ G + +++ +DK T + KGFAF + E A A+ Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300 Query: 315 SG 320 SG Sbjct: 301 SG 302
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 + + NL E E L E+ G + +++ +DK T + KGFAF + E A A+ Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300 Query: 315 SG 320 SG Sbjct: 301 SG 302
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/76 (26%), Positives = 37/76 (48%) Frame = +3 Query: 123 PGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYA 302 P +Y+GN+ + + L ++ + G+VV + D+E+ R +GF F +E A Sbjct: 189 PTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEA 248 Query: 303 VRLFSGLVRLHNRTLK 350 + G L RT++ Sbjct: 249 IANLDGQT-LDGRTIR 263 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++GNL + L ++ Q G V + ++ET R +GF F T E A AV L+ Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELY 158 Query: 315 S 317 S Sbjct: 159 S 159
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 V++ N+ + + + L E+ + G + + RD + + KGF F YET E AQ AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 A+Y+G+LD V+E +LY+ G + I RD T P G+ + + A++A+ Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Score = 32.3 bits (72), Expect = 0.63 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 +R PG +YI NLDE +++ L E G + + E + KGF + + E A Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEA 354 Query: 294 QYAVRLFSGLV 326 AV +G + Sbjct: 355 TKAVDEMNGRI 365
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 V++ N+ + + + L E+ + G + + RD + + KGF F YET E AQ AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 A+Y+G+LD V+E +LY+ G + I RD T P G+ + + A++A+ Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Score = 32.3 bits (72), Expect = 0.63 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 +R PG +YI NLDE +++ L E G + + E + KGF + + E A Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEA 354 Query: 294 QYAVRLFSGLV 326 AV +G + Sbjct: 355 TKAVDEMNGRI 365
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 V++ N+ + + + L E+ + G + + RD + + KGF F YET E AQ AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 A+Y+G+LD V+E +LY+ G + I RD T P G+ + + A++A+ Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Score = 32.7 bits (73), Expect = 0.48 Identities = 22/71 (30%), Positives = 33/71 (46%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 +R PG +YI NLDE +++ L E G + + E + KGF + + E A Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEA 354 Query: 294 QYAVRLFSGLV 326 AV +G V Sbjct: 355 TKAVDEMNGRV 365
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 V++ N+ + + + L E+ + G + + RD + + KGF F YET E AQ AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 A+Y+G+LD V+E +LY+ G + I RD T P G+ + + A++A+ Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Score = 32.3 bits (72), Expect = 0.63 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 +R PG +YI NLDE +++ L E G + + E + KGF + + E A Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEA 354 Query: 294 QYAVRLFSGLV 326 AV +G + Sbjct: 355 TKAVDEMNGRI 365
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 V++ N+ + + + L E+ + G + + RD + + KGF F YET E AQ AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 A+Y+G+LD V+E +LY+ G + I RD T P G+ + + A++A+ Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Score = 32.3 bits (72), Expect = 0.63 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 +R PG +YI NLDE +++ L E G + + E + KGF + + E A Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEA 354 Query: 294 QYAVRLFSGLV 326 AV +G + Sbjct: 355 TKAVDEMNGRI 365
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 V++ N+ + + + L E+ + G + + RD + + KGF F YET E AQ AV Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 A+Y+G+LD V+E +LY+ G + I RD T P G+ + + A++A+ Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76 Score = 32.3 bits (72), Expect = 0.63 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 +R PG +YI NLDE +++ L E G + + E + KGF + + E A Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEA 354 Query: 294 QYAVRLFSGLV 326 AV +G + Sbjct: 355 TKAVDEMNGRI 365
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 38.9 bits (89), Expect = 0.007 Identities = 17/62 (27%), Positives = 33/62 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G L+ E+ L + G + ++ + +D+ET R +GF F + E A A+R Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 315 SG 320 +G Sbjct: 68 NG 69
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/86 (23%), Positives = 43/86 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + Q G++ + I D+ + + +GFAF ++ + V Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 165 Query: 315 SGLVRLHNRTLKFAISGQDKASSNAN 392 V HN ++ A+ Q+ AS++++ Sbjct: 166 YHTVNGHNCEVRKALCKQEMASASSS 191 Score = 37.7 bits (86), Expect = 0.015 Identities = 26/89 (29%), Positives = 39/89 (43%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + ++ L Q G + D + RD T R +GF F Y T E A+ Sbjct: 15 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 74 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 V K A+S +D A++TV Sbjct: 75 PHKVDGRVVEPKRAVSREDSQRPGAHLTV 103
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 38.9 bits (89), Expect = 0.007 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G V+I NL E L E+L Q G + + + +T KG AFA++ T+E AQ + Sbjct: 323 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 382 Query: 306 RLFS-----GLVRLHNRTLK 350 S G ++L R LK Sbjct: 383 AAASPEAEGGGLKLDGRQLK 402 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/61 (24%), Positives = 27/61 (44%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G +++G L L E+ QVG V + +K + +GF + + E Q A+ Sbjct: 2 GLTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 61 Query: 306 R 308 + Sbjct: 62 K 62
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 38.9 bits (89), Expect = 0.007 Identities = 17/62 (27%), Positives = 35/62 (56%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+G+L ++E +L I G++ ++ + +D +T R KG+ F + E A+ A+ Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 315 SG 320 +G Sbjct: 325 NG 326
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYE 278 C ++IG L+ +E L E + G V DL I +D T R +GF F +E Sbjct: 159 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE 208 Score = 35.8 bits (81), Expect = 0.057 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 +++G + V + E Q G ++D + DK+T + +GF F Y++ + Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 38.5 bits (88), Expect = 0.009 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILI-QVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 C++++G+L V+E L+E+ I + I D+ T KG+ F ++ + Q A+ Sbjct: 163 CSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLAL 222 Query: 306 RLFSGLVRLHNRTLKFA-ISGQDKASSNAN 392 G V L+ R +K SGQ + S N Sbjct: 223 SEMQG-VFLNGRAIKVGPTSGQQQHVSGNN 251
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 38.5 bits (88), Expect = 0.009 Identities = 21/90 (23%), Positives = 44/90 (48%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GNL +V E L E + G +V + I R+ T +GF + +E + A++L Sbjct: 286 SVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKL 345 Query: 312 FSGLVRLHNRTLKFAISGQDKASSNANVTV 401 + + + +++ + N+N +V Sbjct: 346 NNSELMGRKLRVMRSVNKEKLKQQNSNPSV 375
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 38.1 bits (87), Expect = 0.011 Identities = 17/62 (27%), Positives = 33/62 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G L+ E+ L + G + ++ + +D+ET R +GF F + E A A+R Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 315 SG 320 +G Sbjct: 68 NG 69
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 38.1 bits (87), Expect = 0.011 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 15/120 (12%) Frame = +3 Query: 6 PSRELVRRAVTALLPTAGXXXXXXXXXXXXXXXVSMARNP---------------GCAVY 140 P E RRA+ ++ T G S+ NP G V+ Sbjct: 146 PDGEHARRAMQKVMATTGGMGMGPGGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVF 205 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NLD KV + L E+ G VV I DK+ + +G +E A A+ +F+G Sbjct: 206 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMFNG 264
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 38.1 bits (87), Expect = 0.011 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYE 278 +++G LD ++ L Q G VVD I +DK T++ +GF F +++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +++G + E L E + G V ++ + D E RP+GF F +E E+ AV + Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/66 (30%), Positives = 35/66 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V+IGN+D + + E G++V IP+DK T + K FA+ E++ + A+ + Sbjct: 102 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVM 161 Query: 312 FSGLVR 329 L R Sbjct: 162 NGSLFR 167
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 38.1 bits (87), Expect = 0.011 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Frame = +3 Query: 108 SMARNPGCA--VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYET 281 ++A PG A ++I NL + E L+++ G V + I +D T++ KG+ F Sbjct: 393 TLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTN 452 Query: 282 EEIAQYAVRLFSGLVRLHNRTLK 350 + A A+R +G + NR L+ Sbjct: 453 YDEAAMAIRALNGYT-MGNRVLQ 474
>PX11A_MOUSE (Q9Z211) Peroxisomal membrane protein 11A (Peroxin-11A)| (Peroxisomal biogenesis factor 11A) (PEX11alpha) Length = 246 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = +3 Query: 171 RVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSGLVR 329 R LYEIL+Q+G+V R+K + P ++ A ETE + + + LF L R Sbjct: 137 RDLYEILLQMGQVARDRAKREKSSRDPPKYSVANEETEWLQSFLLLLFQSLKR 189
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 38.1 bits (87), Expect = 0.011 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Frame = +3 Query: 108 SMARNPGCA--VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYET 281 ++A PG A ++I NL + E L+++ G V + I +D T++ KG+ F Sbjct: 429 TLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTN 488 Query: 282 EEIAQYAVRLFSGLVRLHNRTLK 350 + A A+R +G + NR L+ Sbjct: 489 YDEAAMAIRALNGYT-MGNRVLQ 510
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 38.1 bits (87), Expect = 0.011 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYE 278 +++G LD ++ L Q G VVD I +DK T++ +GF F +++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +++G + E L E + G V ++ + D E RP+GF F +E E+ AV + Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 38.1 bits (87), Expect = 0.011 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYE 278 +++G LD ++ L Q G VVD I +DK T++ +GF F +++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59 Score = 36.6 bits (83), Expect = 0.033 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +++G + E L E + G V ++ + D E RP+GF F +E E+ AV + Sbjct: 116 IFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 38.1 bits (87), Expect = 0.011 Identities = 23/84 (27%), Positives = 45/84 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+GNLD+ ++E +L + G + ++ I DK ++ +AF EY A A++ Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL 134 Query: 315 SGLVRLHNRTLKFAISGQDKASSN 386 +G ++ N +K + Q + SS+ Sbjct: 135 NG-KQIENNIVKINWAFQSQQSSS 157
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 37.7 bits (86), Expect = 0.015 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L +++ + E+L+ G++ ++ +D T KG+AF EY I ++ Sbjct: 209 IFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGL 268 Query: 315 SGLVRLHNRTL--KFAISGQDKASSNANVT 398 +G+ +L ++ L + A G A + AN T Sbjct: 269 NGM-QLGDKKLIVQRASVGAKNAQNAANTT 297
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 37.7 bits (86), Expect = 0.015 Identities = 17/48 (35%), Positives = 31/48 (64%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 +V++GNLD + SE L++ + G + + I RD +T+ KGFA+ ++ Sbjct: 260 SVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQF 307
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 37.7 bits (86), Expect = 0.015 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 15/120 (12%) Frame = +3 Query: 6 PSRELVRRAVTALLPTAGXXXXXXXXXXXXXXXVSMARNP---------------GCAVY 140 P E RRA+ ++ T G S+ NP G V+ Sbjct: 147 PDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVF 206 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NLD KV + L E+ G VV I DK+ + +G +E A A+ +F+G Sbjct: 207 VANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNG 265
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 37.7 bits (86), Expect = 0.015 Identities = 24/74 (32%), Positives = 40/74 (54%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A N G + + NL +V+++ + + G++V L IP+ K +GFAFAE+ T A Sbjct: 699 AANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPK-KFNQSSRGFAFAEFST---A 754 Query: 294 QYAVRLFSGLVRLH 335 + A+ F+ L H Sbjct: 755 KEALNAFNSLKDTH 768
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 37.7 bits (86), Expect = 0.015 Identities = 25/76 (32%), Positives = 37/76 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I L ++ L EI G V DL + ++ +PKG A+ EYE E A AV Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKM 879 Query: 315 SGLVRLHNRTLKFAIS 362 G+ + +K AIS Sbjct: 880 DGMT-IKENVIKVAIS 894
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 37.7 bits (86), Expect = 0.015 Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Frame = +3 Query: 105 VSMARNPGCAV-YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYET 281 V+M++NP + ++GNL V++ +L + G +V + + +++ + KGFAF +++ Sbjct: 230 VAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKN 289 Query: 282 EE 287 EE Sbjct: 290 EE 291
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 37.4 bits (85), Expect = 0.019 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 M+ VY+GNL + ER + ++ + G VV + + K RP G+AF E++ Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARD 57 Query: 291 AQYAV 305 A+ A+ Sbjct: 58 AEDAI 62
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 37.4 bits (85), Expect = 0.019 Identities = 25/76 (32%), Positives = 37/76 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I L ++ L EI G V DL + ++ +PKG A+ EYE E A AV Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKM 861 Query: 315 SGLVRLHNRTLKFAIS 362 G+ + +K AIS Sbjct: 862 DGMT-IKENIIKVAIS 876
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 37.4 bits (85), Expect = 0.019 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVD--------LHIPRDKETSRPKGFAFAEYETEE 287 A+Y+ L++ V+ L + Q G V +HI DKET +PKG A YE Sbjct: 362 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP 421 Query: 288 IAQYAVRLFSG 320 A+ AV F G Sbjct: 422 TAKAAVEWFDG 432
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 37.4 bits (85), Expect = 0.019 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVD--------LHIPRDKETSRPKGFAFAEYETEE 287 A+Y+ L++ V+ L + Q G V +HI DKET +PKG A YE Sbjct: 361 AIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP 420 Query: 288 IAQYAVRLFSG 320 A+ AV F G Sbjct: 421 TAKAAVEWFDG 431
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 37.4 bits (85), Expect = 0.019 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GNL K+ + L E + G +V + I R+ T +GF + +E + A++L Sbjct: 292 SVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKL 351
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 37.0 bits (84), Expect = 0.025 Identities = 14/61 (22%), Positives = 35/61 (57%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETE 284 ++M ++P +++G L+ + +E + E Q G + + +P D + ++ +GF F ++ E Sbjct: 151 MAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEE 210 Query: 285 E 287 + Sbjct: 211 D 211 Score = 32.3 bits (72), Expect = 0.63 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAF 266 +++G L S++ L + + G VVD I D T R +GF F Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 120
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 37.0 bits (84), Expect = 0.025 Identities = 24/76 (31%), Positives = 37/76 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++I L ++ L +I G V DL + ++ +PKG A+ EYE E A AV Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKM 861 Query: 315 SGLVRLHNRTLKFAIS 362 G+ + +K AIS Sbjct: 862 DGMT-IRENVIKVAIS 876
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 37.0 bits (84), Expect = 0.025 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 C VY+GNL S+ + + G + ++ + R+ P GFAF E+E A+ A R Sbjct: 11 CKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARN-----PPGFAFVEFEDRRDAEDATR 65 Query: 309 LFSG 320 G Sbjct: 66 ALDG 69
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = +3 Query: 138 YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFS 317 ++G L + L Q G V+D I D+ET R +GF F ++ E+ + A+ + Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 318 GLVRLHNRTL 347 G L RT+ Sbjct: 69 G-KELDGRTI 77
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 37.0 bits (84), Expect = 0.025 Identities = 21/77 (27%), Positives = 39/77 (50%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GNLD + E L++ G + + I RD +T+ KGFA+ +++ + A+ L Sbjct: 360 SVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALLL 419 Query: 312 FSGLVRLHNRTLKFAIS 362 + + K IS Sbjct: 420 HEKKIHEGKKARKLRIS 436
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 37.0 bits (84), Expect = 0.025 Identities = 18/68 (26%), Positives = 36/68 (52%) Frame = +3 Query: 108 SMARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 S + P +++GNLD + ++ L E QVG++ + + ++T + KGF F ++ + Sbjct: 221 SSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280 Query: 288 IAQYAVRL 311 A+ L Sbjct: 281 TCMKAMEL 288 Score = 29.3 bits (64), Expect = 5.3 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +3 Query: 156 EKVSERVLYEILIQVGRVVDLHIPRDKETS-RPKGFAFAEYETEEIAQYAVRLFSGLVRL 332 ++VSE + I + ++ +H+P KE + KGFA+ ++ TE+ + A++ + Sbjct: 134 KEVSEENIKPITTE--QITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNG 191 Query: 333 HNRTLKFAISGQDKASSNAN 392 N +K + S AN Sbjct: 192 RNILIKSNTDFSGRPSKPAN 211
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 37.0 bits (84), Expect = 0.025 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V+IGN+D + + E G +V IP+DK T + K FA+ E++ + A+ + Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVM 121 Query: 312 FSGLVR 329 L R Sbjct: 122 NGSLFR 127
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 36.6 bits (83), Expect = 0.033 Identities = 16/53 (30%), Positives = 31/53 (58%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 +++ NL +E L + G++ +H+P DK+T+ PKGFA+ ++ + A Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDA 377 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/61 (29%), Positives = 34/61 (55%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G + I NL + +++ + +L G++ + +P+ + S +GFAFAE+ T A A+ Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA-RGFAFAEFVTAREAANAM 778 Query: 306 R 308 R Sbjct: 779 R 779
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.6 bits (83), Expect = 0.033 Identities = 16/54 (29%), Positives = 30/54 (55%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +++G L + + + Q G+V D + DK T+R +GF F +E+E+I + Sbjct: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 C ++IG L + ++ L E Q G V + + RD T R +GF F + Sbjct: 20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 36.6 bits (83), Expect = 0.033 Identities = 16/61 (26%), Positives = 30/61 (49%) Frame = +3 Query: 138 YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFS 317 ++G L + L + G+V+D + D+ET R +GF F + +E+ A+ + Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 318 G 320 G Sbjct: 71 G 71
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 36.2 bits (82), Expect = 0.043 Identities = 18/65 (27%), Positives = 35/65 (53%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G ++I +L ++ ++ L ++ + G VV + DK+T+ K F F Y+ AQ A+ Sbjct: 400 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 459 Query: 306 RLFSG 320 + +G Sbjct: 460 QSMNG 464 Score = 32.0 bits (71), Expect = 0.82 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRP--KGFAFAEYETEEIAQYAVR 308 +++G + SE+ L E+ Q G V +++I RD+ + P KG F + T + A A Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77 Query: 309 LFSGLVRLHNRTLKFAISGQDKASSNA 389 + L + D +NA Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNA 104
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 36.2 bits (82), Expect = 0.043 Identities = 18/65 (27%), Positives = 35/65 (53%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G ++I +L ++ ++ L ++ + G VV + DK+T+ K F F Y+ AQ A+ Sbjct: 400 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 459 Query: 306 RLFSG 320 + +G Sbjct: 460 QSMNG 464 Score = 31.6 bits (70), Expect = 1.1 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRP--KGFAFAEYETEEIAQYAVR 308 +++G + SE+ L E+ Q G V ++++ RD+ + P KG F + T + A A Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77 Query: 309 LFSGLVRLHNRTLKFAISGQDKASSNA 389 + L + D +NA Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNA 104
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 36.2 bits (82), Expect = 0.043 Identities = 21/79 (26%), Positives = 38/79 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G L V+E L E Q G V I DK++ + +GF F ++ + A A + Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVK 159 Query: 315 SGLVRLHNRTLKFAISGQD 371 ++ H +K A+ +D Sbjct: 160 FHPIQGHRVEVKKAVPKED 178
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 36.2 bits (82), Expect = 0.043 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + L + G VVD + D+ET R +GF F + E A A+ Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 Query: 315 SG 320 G Sbjct: 97 DG 98
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 36.2 bits (82), Expect = 0.043 Identities = 18/79 (22%), Positives = 36/79 (45%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L E + G++ I DK++ + +GF F + + V Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQK 161 Query: 315 SGLVRLHNRTLKFAISGQD 371 + HN ++ A+S Q+ Sbjct: 162 YHTINGHNAEVRKALSKQE 180 Score = 33.5 bits (75), Expect = 0.28 Identities = 22/89 (24%), Positives = 39/89 (43%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L + +E L Q G++ D + RD + R +GF F + A+ Sbjct: 11 LFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSAR 70 Query: 315 SGLVRLHNRTLKFAISGQDKASSNANVTV 401 + K A++ ++ A A+VTV Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTV 99
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 36.2 bits (82), Expect = 0.043 Identities = 17/61 (27%), Positives = 31/61 (50%) Frame = +3 Query: 138 YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFS 317 ++G L ++ L Q G V+D I D+E+ R +GF F ++ E+ + A+ + Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 318 G 320 G Sbjct: 69 G 69
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 36.2 bits (82), Expect = 0.043 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQY 299 G V++G L V+E L + G+V ++ I D+E + +GF F +E E ++ Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH 152 Score = 28.9 bits (63), Expect = 6.9 Identities = 10/47 (21%), Positives = 25/47 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 +++G L + ++ L + G ++D + ++ E+ R +GF F + Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTF 55
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 36.2 bits (82), Expect = 0.043 Identities = 17/61 (27%), Positives = 31/61 (50%) Frame = +3 Query: 138 YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFS 317 ++G L ++ L + Q G + D I D+ET R +GF F ++ E+ + A+ + Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 318 G 320 G Sbjct: 69 G 69
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 36.2 bits (82), Expect = 0.043 Identities = 20/80 (25%), Positives = 36/80 (45%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++ NL + E L + G++ ++H+ D + KGFA+ +Y + A A R Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356 Query: 315 SGLVRLHNRTLKFAISGQDK 374 G + R L + Q K Sbjct: 357 DGKI-FQGRLLHILPASQKK 375
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 35.8 bits (81), Expect = 0.057 Identities = 19/59 (32%), Positives = 32/59 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 V++G LD + E L+E G V + I RD +T+ KGFA+ +++ + A+ L Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALLL 334
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 35.8 bits (81), Expect = 0.057 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 ++Y+GN+D + L G V + I DK + PKGFA+ E+ +E + ++ L Sbjct: 172 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 231 Query: 312 FSGLVR------LHNRTLKFAISGQDKASSNA 389 L R + RT + IS D+ A Sbjct: 232 DESLFRGRQIKVIPKRTNRPGISTTDRGFPRA 263
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 35.8 bits (81), Expect = 0.057 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 ++Y+GN+D + L G V + I DK + PKGFA+ E+ +E + ++ L Sbjct: 172 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 231 Query: 312 FSGLVR------LHNRTLKFAISGQDKASSNA 389 L R + RT + IS D+ A Sbjct: 232 DESLFRGRQIKVIPKRTNRPGISTTDRGFPRA 263
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 35.8 bits (81), Expect = 0.057 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 +V++GNLD + E L++ G + + I RD +T+ KGFA+ ++ + A+ L Sbjct: 229 SVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALLL 288 Query: 312 FSGLVRLHNRTLK 350 + N LK Sbjct: 289 NEKPMISQNEHLK 301
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.8 bits (81), Expect = 0.057 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +++G L + + Q G+V D + DK T+R +GF F +E+E+I + Sbjct: 111 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 C ++IG L + ++ L E Q G V + + RD T R +GF F + Sbjct: 20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.8 bits (81), Expect = 0.057 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +++G L + + Q G+V D + DK T+R +GF F +E+E+I + Sbjct: 111 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 C ++IG L + ++ L E Q G V + + RD T R +GF F + Sbjct: 20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 68
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 35.8 bits (81), Expect = 0.057 Identities = 24/75 (32%), Positives = 36/75 (48%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G VYIG L + V E L + +VGR+ + + + +GFA+A Y + AQ A+ Sbjct: 57 GSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAI 115 Query: 306 RLFSGLVRLHNRTLK 350 LHN L+ Sbjct: 116 ------ATLHNHQLR 124
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 35.8 bits (81), Expect = 0.057 Identities = 21/65 (32%), Positives = 32/65 (49%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G V++ NLD KV + L E+ G VV I DK+ + +G +E A A+ Sbjct: 162 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAI 220 Query: 306 RLFSG 320 +F+G Sbjct: 221 SMFNG 225
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 35.8 bits (81), Expect = 0.057 Identities = 16/62 (25%), Positives = 32/62 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++ NL SE L + + G++ ++H+ D ++ KGFA+ +Y + A A + Sbjct: 303 LFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKEL 362 Query: 315 SG 320 G Sbjct: 363 DG 364
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 35.8 bits (81), Expect = 0.057 Identities = 22/62 (35%), Positives = 33/62 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 VY+GNL V E+ + +I + GR+ + I ++ R FAF E+E A+ AVR Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAEDAVRAR 66 Query: 315 SG 320 G Sbjct: 67 DG 68
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 35.4 bits (80), Expect = 0.074 Identities = 22/70 (31%), Positives = 34/70 (48%) Frame = +3 Query: 111 MARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 M G VY+GNL +KV + L + G++ + I P GFAF E+E + Sbjct: 1 MGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWI-----AFNPPGFAFVEFEHRDD 55 Query: 291 AQYAVRLFSG 320 A+ A + +G Sbjct: 56 AEKACDILNG 65
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 35.4 bits (80), Expect = 0.074 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 ++Y+GN+D + L G V + I DK + PKGFA+ E+ +E + ++ L Sbjct: 168 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 227 Query: 312 FSGLVR------LHNRTLKFAISGQDK 374 L R + RT + IS D+ Sbjct: 228 DESLFRGRQIKVIPKRTNRPGISTTDR 254
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +++G L + + Q G+V D + DK T+R +GF F +E E++ + Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 +PG ++IG L + S L + + G + + + RD T R +GF F + Sbjct: 19 DPG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +++G L + + Q G+V D + DK T+R +GF F +E E++ + Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 +PG ++IG L + S L + + G + + + RD T R +GF F + Sbjct: 19 DPG-KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 + P +++G L E + E G V + +P D +T++ +GF F ++ EE Sbjct: 178 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 ++IG L +++ L + + G VVD + D T R +GF F ++ E Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 + P +++G L E + E G V + +P D +T++ +GF F ++ EE Sbjct: 178 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 ++IG L +++ L + + G VVD + D T R +GF F ++ E Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 + P +++G L E + E G V + +P D +T++ +GF F ++ EE Sbjct: 30 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 86
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 35.4 bits (80), Expect = 0.074 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 + P +++G L E + E G V + +P D +T++ +GF F ++ EE Sbjct: 176 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 ++IG L +++ L + + G VVD + D T R +GF F ++ E Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +++G +D K +E L + Q G V ++ I D+ KG+ F +ET+E AQ Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQ 87
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +++G +D K +E L + Q G V ++ I D+ KG+ F +ET+E AQ Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQ 87
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 35.4 bits (80), Expect = 0.074 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQ 296 +++G +D K +E L + Q G V ++ I D+ KG+ F +ET+E AQ Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQ 87
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 35.0 bits (79), Expect = 0.097 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+GNL SE +YE+ + G + + + D+ P GF F Y + A A++ Sbjct: 48 IYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEALNALKYL 107 Query: 315 SGLVRLHNRTL 347 S +L +T+ Sbjct: 108 SD-TKLDEKTI 117
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 35.0 bits (79), Expect = 0.097 Identities = 15/57 (26%), Positives = 27/57 (47%) Frame = +3 Query: 117 RNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEE 287 + P +++G L E + E G V + +P D +T++ +GF F + EE Sbjct: 168 KEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFNQEE 224
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 35.0 bits (79), Expect = 0.097 Identities = 16/79 (20%), Positives = 38/79 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + + G++ + I D+++ + +GF F ++ + V Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 161 Query: 315 SGLVRLHNRTLKFAISGQD 371 + HN ++ A+S Q+ Sbjct: 162 YHTINGHNAEVRKALSRQE 180 Score = 33.1 bits (74), Expect = 0.37 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYET--EEIAQYAVR 308 ++IG L + +E L Q G++ D + RD + R +GF F + + E A A R Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70 Query: 309 LFSGLVRLHNRTL--KFAISGQDKASSNANVTV 401 S + R + K A++ ++ A+VTV Sbjct: 71 PHS----IDGRVVEPKRAVAREESGKPGAHVTV 99
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 35.0 bits (79), Expect = 0.097 Identities = 16/79 (20%), Positives = 38/79 (48%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++G + E E L + + G++ + I D+++ + +GF F ++ + V Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQK 173 Query: 315 SGLVRLHNRTLKFAISGQD 371 + HN ++ A+S Q+ Sbjct: 174 YHTINGHNAEVRKALSRQE 192 Score = 33.1 bits (74), Expect = 0.37 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYET--EEIAQYAVR 308 ++IG L + +E L Q G++ D + RD + R +GF F + + E A A R Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82 Query: 309 LFSGLVRLHNRTL--KFAISGQDKASSNANVTV 401 S + R + K A++ ++ A+VTV Sbjct: 83 PHS----IDGRVVEPKRAVAREESGKPGAHVTV 111
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 35.0 bits (79), Expect = 0.097 Identities = 14/63 (22%), Positives = 34/63 (53%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 ++++GN+ V+ + + G++ + + D+ T PKG+ + E+E+ + A++L Sbjct: 65 SIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQL 124 Query: 312 FSG 320 G Sbjct: 125 NGG 127
>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 282 Score = 35.0 bits (79), Expect = 0.097 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Frame = +3 Query: 123 PGCAVYIGNLDEKVS----ERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 P +YI NL+EK+ ++ LY I Q G+++D+ + R+ + +G AF ++ Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRN---LKMRGQAFVIFKETSS 64 Query: 291 AQYAVRLFSG 320 A A+R G Sbjct: 65 ATNALRSMQG 74
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 35.0 bits (79), Expect = 0.097 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 ++I N+ + SE + Q G + ++HI D T + KGF + ++ +E A A R Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYR 369
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 35.0 bits (79), Expect = 0.097 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G V++G + + E L + + G + DL + D + + +G+AF + +E AQ AV Sbjct: 164 GTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 223 Query: 306 RL 311 +L Sbjct: 224 KL 225 Score = 33.9 bits (76), Expect = 0.22 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLDE-KVSERVLYEILIQVGRVVDL---HIPRDKETSRPKGFAFAE 272 +S+A N +++G++ + K E +L E +VD+ H P DK+ +R GF F E Sbjct: 241 ISVANN---RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNR--GFCFLE 295 Query: 273 YET-EEIAQYAVRLFSGLVRL 332 YE + AQ RL SG V++ Sbjct: 296 YEDHKSAAQARRRLMSGKVKV 316
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 34.7 bits (78), Expect = 0.13 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +3 Query: 129 CAVYIGNLDE-KVSERVLYEILIQVGRVVDLHI-PRDKETSRPKGFAFAEYETEEIAQYA 302 C +++G + + K E +L E+ VVD+ + P + ++ +GFAF EYE+ A A Sbjct: 136 CRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195 Query: 303 VR-LFSGLVRL 332 R L G ++L Sbjct: 196 RRKLLPGRIQL 206 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/61 (22%), Positives = 33/61 (54%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 GC ++IG L + E L + ++G++ ++ + D + +G+AF + + A+ A+ Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNN-RGYAFVTFSNKLEAKNAI 113 Query: 306 R 308 + Sbjct: 114 K 114
>IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 90 kDa subunit| (eIF3 p90) (Cell cycle regulation and translation initiation protein) Length = 763 Score = 34.7 bits (78), Expect = 0.13 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +3 Query: 162 VSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 V ++ L + + G+VV++ P D+ T + KGF F E + A+ ++ F G Sbjct: 94 VLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 146
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.7 bits (78), Expect = 0.13 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +3 Query: 129 CAVYIGNLDE-KVSERVLYEILIQVGRVVDLHI-PRDKETSRPKGFAFAEYETEEIAQYA 302 C +++G + + K E +L E+ VVD+ + P + ++ +GFAF EYE+ A A Sbjct: 136 CRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195 Query: 303 -VRLFSGLVRL 332 RL G ++L Sbjct: 196 RRRLLPGRIQL 206 Score = 32.7 bits (73), Expect = 0.48 Identities = 14/61 (22%), Positives = 34/61 (55%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 GC ++IG L + E L + ++G++ ++ + D + +G+AF + ++ A+ A+ Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNN-RGYAFVTFSNKQEAKNAI 113 Query: 306 R 308 + Sbjct: 114 K 114
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.7 bits (78), Expect = 0.13 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +3 Query: 129 CAVYIGNLDE-KVSERVLYEILIQVGRVVDLHI-PRDKETSRPKGFAFAEYETEEIAQYA 302 C +++G + + K E +L E+ VVD+ + P + ++ +GFAF EYE+ A A Sbjct: 136 CRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195 Query: 303 VR-LFSGLVRL 332 R L G ++L Sbjct: 196 RRKLLPGRIQL 206 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/61 (22%), Positives = 33/61 (54%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 GC ++IG L + E L + ++G++ ++ + D + +G+AF + + A+ A+ Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNN-RGYAFVTFSNKVEAKNAI 113 Query: 306 R 308 + Sbjct: 114 K 114
>PX11A_RAT (O70597) Peroxisomal membrane protein 11A (Peroxin-11A)| (Peroxisomal biogenesis factor 11A) (PEX11alpha) (Pex11palpha) (RnPEX11p) (28 kDa peroxisomal integral membrane protein) (PMP28) (Peroxisomal membrane protein 26) (Pmp26p) (Peroxisomal coa Length = 246 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/53 (32%), Positives = 29/53 (54%) Frame = +3 Query: 171 RVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSGLVR 329 R LYE+L+ +G+V R+K + P ++ A E+E + + + LF L R Sbjct: 137 RDLYEVLLHMGQVARDRAKREKSSGDPPKYSVANEESEWLQSFLLLLFQSLKR 189
>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 281 Score = 34.7 bits (78), Expect = 0.13 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Frame = +3 Query: 123 PGCAVYIGNLDEKVS----ERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 P +YI NL+EK+ ++ LY I Q G+++D+ + R + + +G AF ++ Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSS 63 Query: 291 AQYAVRLFSG 320 A A+R G Sbjct: 64 ATNALRSMQG 73
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 34.7 bits (78), Expect = 0.13 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDK-ETSRPKGFAFAEYETEEIAQYAVRL 311 V+IG L V++ + EI G++ + +P D+ KG+A+ E+E E A+ A++ Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199 Query: 312 FSG 320 G Sbjct: 200 MDG 202
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 34.7 bits (78), Expect = 0.13 Identities = 22/84 (26%), Positives = 38/84 (45%) Frame = +3 Query: 141 IGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 + NL SE L E+ + + +P++ + RPKG+AF E+ T E A+ A+ + Sbjct: 465 VNNLSYAASEETLQELF---KKATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCNN 520 Query: 321 LVRLHNRTLKFAISGQDKASSNAN 392 + R ++ S N N Sbjct: 521 -TEIEGRAIRLEFSSPSWQKGNMN 543
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +3 Query: 132 AVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRL 311 ++++GNLD + E L++ G + + I RD +T+ KGFA+ +++ + A+ L Sbjct: 280 SIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALLL 339
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L +++ + E+L G + ++ +D T KG+AF EY + A+ Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320 Query: 315 SGL 323 +G+ Sbjct: 321 NGM 323
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 ++IG L +++ + E+L G + ++ +D T KG+AF EY + A+ Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320 Query: 315 SGL 323 +G+ Sbjct: 321 NGM 323
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLD-EKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYET 281 ++M ++P +++G L+ E +E + E + G + + +P D + ++ +GF F ++ Sbjct: 144 MAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKE 203 Query: 282 EE 287 EE Sbjct: 204 EE 205 Score = 32.3 bits (72), Expect = 0.63 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAF 266 +++G L S++ L + + G VVD I D T R +GF F Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 113
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 34.3 bits (77), Expect = 0.16 Identities = 23/75 (30%), Positives = 36/75 (48%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 G V+IG L + V E L + +VGR+ + + + +GFA+A Y + AQ A+ Sbjct: 57 GSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAI 115 Query: 306 RLFSGLVRLHNRTLK 350 LHN L+ Sbjct: 116 ------ATLHNHPLR 124
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 34.3 bits (77), Expect = 0.16 Identities = 14/62 (22%), Positives = 31/62 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 V++G+L +++ + GR+ D + +D T + KG+ F + + A+ A++ Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 315 SG 320 G Sbjct: 168 GG 169 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/72 (22%), Positives = 37/72 (51%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETE 284 VS + C VY G + ++E+++ + G+++++ + D KG++F + + Sbjct: 206 VSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSH 259 Query: 285 EIAQYAVRLFSG 320 E A +A+ +G Sbjct: 260 ESAAHAIVSVNG 271 Score = 29.3 bits (64), Expect = 5.3 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+GNL V+E ++ ++ Q+G + + D + P + F E+ A A+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAM 66 Query: 315 SGLVRLHNRTLKF----AISGQDKASSNANVTVT 404 +G ++ + +K S Q K +S++ V T Sbjct: 67 NGR-KIMGKEVKVNWATTPSSQKKDTSSSTVVST 99
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 34.3 bits (77), Expect = 0.16 Identities = 14/62 (22%), Positives = 31/62 (50%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 V++G+L +++ + GR+ D + +D T + KG+ F + + A+ A++ Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 315 SG 320 G Sbjct: 168 GG 169 Score = 32.7 bits (73), Expect = 0.48 Identities = 15/72 (20%), Positives = 37/72 (51%) Frame = +3 Query: 105 VSMARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETE 284 V+ + C VY G + ++E+++ + G+++++ + D KG++F + + Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259 Query: 285 EIAQYAVRLFSG 320 E A +A+ +G Sbjct: 260 ESAAHAIVSVNG 271 Score = 29.3 bits (64), Expect = 5.3 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 4/94 (4%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +Y+GNL V+E ++ ++ Q+G + + D + P + F E+ A A+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAM 66 Query: 315 SGLVRLHNRTLKF----AISGQDKASSNANVTVT 404 +G ++ + +K S Q K +S++ V T Sbjct: 67 NGR-KIMGKEVKVNWATTPSSQKKDTSSSTVVST 99
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 33.9 bits (76), Expect = 0.22 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3 Query: 177 LYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG 320 L+ G V++ I D+ET R +GF F + TEE + A+ +G Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNG 50
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 33.9 bits (76), Expect = 0.22 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYE 278 +P ++IG L + E L + ++ G + + I +DK T + KG+AF ++ Sbjct: 104 DPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFK 156
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 33.9 bits (76), Expect = 0.22 Identities = 26/86 (30%), Positives = 38/86 (44%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 C VY+GNL ++ L G + + + R+ P GFAF E+E A AVR Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVR 64 Query: 309 LFSGLVRLHNRTLKFAISGQDKASSN 386 G L ++ +S +K S N Sbjct: 65 ELDGRT-LCGCRVRVELSNGEKRSRN 89
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 33.9 bits (76), Expect = 0.22 Identities = 26/86 (30%), Positives = 38/86 (44%) Frame = +3 Query: 129 CAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVR 308 C VY+GNL ++ L G + + + R+ P GFAF E+E A AVR Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVR 64 Query: 309 LFSGLVRLHNRTLKFAISGQDKASSN 386 G L ++ +S +K S N Sbjct: 65 ELDGRT-LCGCRVRVELSNGEKRSRN 89
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 33.9 bits (76), Expect = 0.22 Identities = 14/62 (22%), Positives = 34/62 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +YI L ++++ + ++ + GR+++ + D+ T +G AF ++ A+ A+ F Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167 Query: 315 SG 320 +G Sbjct: 168 NG 169
>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1-A) (Sex determination protein snf) Length = 216 Score = 33.9 bits (76), Expect = 0.22 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Frame = +3 Query: 123 PGCAVYIGNLDEKVS----ERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEI 290 P +YI NL+EK+ ++ LY I Q G+++D+ +T + +G AF ++ Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVA---LKTLKMRGQAFVIFKEIGS 61 Query: 291 AQYAVRLFSGLVRLHNRTLKFAISGQD 371 A A+R G +++ ++ A S D Sbjct: 62 ASNALRTMQGF-PFYDKPMQIAYSKSD 87
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 33.9 bits (76), Expect = 0.22 Identities = 16/61 (26%), Positives = 27/61 (44%) Frame = +3 Query: 138 YIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFS 317 ++G L S L G ++D + D+ET R +GF F + +E A+ + Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 318 G 320 G Sbjct: 71 G 71
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETE 284 +P ++I ++ SE L G + + + D+E+ +PKG+AF EYE E Sbjct: 99 DPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHE 153
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 33.5 bits (75), Expect = 0.28 Identities = 21/84 (25%), Positives = 39/84 (46%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 +++ NL E ++ Q G + ++H+P + +T + KGFA ++E E A A Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQ 362 Query: 315 SGLVRLHNRTLKFAISGQDKASSN 386 G ++ L + G+ K N Sbjct: 363 DG--KIFQGRLLHILPGKPKKDYN 384 Score = 32.3 bits (72), Expect = 0.63 Identities = 19/69 (27%), Positives = 37/69 (53%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLF 314 + I NL + +++ + ++ G + + +P+ K S +GFAFAEY + + A++A+ Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPK-KFNSESRGFAFAEYVSAKEAEHAMSAL 763 Query: 315 SGLVRLHNR 341 G L R Sbjct: 764 QGTHLLGRR 772
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A N C +Y+GNL + + + ++ + G + D+ + +++ P FAF E+E A Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDA 66 Query: 294 QYAV 305 + AV Sbjct: 67 EDAV 70
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A N C +Y+GNL + + + ++ + G + D+ + +++ P FAF E+E A Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDA 66 Query: 294 QYAV 305 + AV Sbjct: 67 EDAV 70
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A N C +Y+GNL + + + ++ + G + D+ + +++ P FAF E+E A Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDA 66 Query: 294 QYAV 305 + AV Sbjct: 67 EDAV 70
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A N C +Y+GNL + + + ++ + G + D+ + +++ P FAF E+E A Sbjct: 11 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDA 67 Query: 294 QYAV 305 + AV Sbjct: 68 EDAV 71
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 33.5 bits (75), Expect = 0.28 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = +3 Query: 120 NPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEY 275 +P +++ L+ + SE + G + +H+ D+ T++PKG+AF EY Sbjct: 135 DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 33.5 bits (75), Expect = 0.28 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A N C +Y+GNL + + + ++ + G + D+ + +++ P FAF E+E A Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDA 66 Query: 294 QYAV 305 + AV Sbjct: 67 EDAV 70
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/57 (28%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 +YI L +++ L ++ G++V DK T++ KG+ F ++++ AQ AV Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/57 (28%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 +YI L +++ L ++ G++V DK T++ KG+ F ++++ AQ AV Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 33.1 bits (74), Expect = 0.37 Identities = 16/57 (28%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 +YI L +++ L ++ G++V DK T++ KG+ F ++++ AQ AV Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 33.1 bits (74), Expect = 0.37 Identities = 14/61 (22%), Positives = 34/61 (55%) Frame = +3 Query: 126 GCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 GC ++IG L + E L + ++G++ ++ + D + +G+AF + ++ A+ A+ Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFNGNN-RGYAFVTFSNKQEAKNAI 113 Query: 306 R 308 + Sbjct: 114 K 114 Score = 32.3 bits (72), Expect = 0.63 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Frame = +3 Query: 129 CAVYIGNLDE-KVSERVLYEILIQVGRVVDLHI-PRDKETSRPKGFAFAEYETEEIAQYA 302 C ++ G + + K E +L E+ VVD+ + P + ++ +GFAF EYE+ A A Sbjct: 136 CRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMA 195 Query: 303 -VRLFSGLVRL 332 RL G ++L Sbjct: 196 RRRLLPGRIQL 206
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 114 ARNPGCAVYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIA 293 A N C +Y+GNL + + + ++ + G + D+ + +++ P FAF E+E A Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRDA 66 Query: 294 QYAV 305 + AV Sbjct: 67 EDAV 70
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 33.1 bits (74), Expect = 0.37 Identities = 16/57 (28%), Positives = 31/57 (54%) Frame = +3 Query: 135 VYIGNLDEKVSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAV 305 +YI L +++ L ++ G++V DK T++ KG+ F ++++ AQ AV Sbjct: 60 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAV 116
>PRT1_PICAN (P12806) Putative PRT1 protein| Length = 220 Score = 33.1 bits (74), Expect = 0.37 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = +3 Query: 162 VSERVLYEILIQVGRVVDLHIPRDKETSRPKGFAFAEYETEEIAQYAVRLFSG-LVRLHN 338 V ++VL ++ Q G+VVD+ +P E + KGF E ++ A AV+ +G + + + Sbjct: 54 VLKKVLTKLFSQCGKVVDMFMP--LENGQTKGFLIIELDSAAAADKAVKQLNGKKLDVKH 111 Query: 339 RTLKFAISGQDKASSNANVT 398 R + +K + N N++ Sbjct: 112 RLAVNKLPDMEKYALNDNIS 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,044,859 Number of Sequences: 219361 Number of extensions: 1005177 Number of successful extensions: 2821 Number of sequences better than 10.0: 323 Number of HSP's better than 10.0 without gapping: 2625 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2803 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
