Clone Name | bart58f04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK061869.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A02, full insert sequence Length = 1060 Score = 363 bits (183), Expect = 3e-97 Identities = 314/358 (87%) Strand = Plus / Plus Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168 ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| | | Sbjct: 186 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 245 Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228 ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| | Sbjct: 246 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 305 Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288 ||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 306 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 365 Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348 |||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| Sbjct: 366 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 425 Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408 ||||||||| ||||| ||||||||| || || |||| ||| || |||||||||||| Sbjct: 426 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 485 Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466 | ||||||||||||| | |||||| || |||| | |||||||| | |||||||||| Sbjct: 486 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 543
>dbj|AK120426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095G08, full insert sequence Length = 1875 Score = 363 bits (183), Expect = 3e-97 Identities = 314/358 (87%) Strand = Plus / Plus Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168 ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| | | Sbjct: 187 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 246 Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228 ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| | Sbjct: 247 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 306 Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288 ||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 307 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 366 Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348 |||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| Sbjct: 367 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 426 Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408 ||||||||| ||||| ||||||||| || || |||| ||| || |||||||||||| Sbjct: 427 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 486 Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466 | ||||||||||||| | |||||| || |||| | |||||||| | |||||||||| Sbjct: 487 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 544
>dbj|AK099731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089N11, full insert sequence Length = 1333 Score = 363 bits (183), Expect = 3e-97 Identities = 314/358 (87%) Strand = Plus / Plus Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168 ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| | | Sbjct: 187 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 246 Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228 ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| | Sbjct: 247 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 306 Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288 ||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 307 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 366 Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348 |||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| Sbjct: 367 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 426 Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408 ||||||||| ||||| ||||||||| || || |||| ||| || |||||||||||| Sbjct: 427 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 486 Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466 | ||||||||||||| | |||||| || |||| | |||||||| | |||||||||| Sbjct: 487 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 544
>dbj|AK104745.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E05, full insert sequence Length = 1251 Score = 363 bits (183), Expect = 3e-97 Identities = 314/358 (87%) Strand = Plus / Plus Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168 ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| | | Sbjct: 186 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 245 Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228 ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| | Sbjct: 246 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 305 Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288 ||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 306 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 365 Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348 |||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| Sbjct: 366 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 425 Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408 ||||||||| ||||| ||||||||| || || |||| ||| || |||||||||||| Sbjct: 426 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 485 Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466 | ||||||||||||| | |||||| || |||| | |||||||| | |||||||||| Sbjct: 486 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 543
>dbj|AK060130.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A11, full insert sequence Length = 1251 Score = 363 bits (183), Expect = 3e-97 Identities = 314/358 (87%) Strand = Plus / Plus Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168 ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| | | Sbjct: 186 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 245 Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228 ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| | Sbjct: 246 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 305 Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288 ||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 306 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 365 Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348 |||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| Sbjct: 366 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 425 Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408 ||||||||| ||||| ||||||||| || || |||| ||| || |||||||||||| Sbjct: 426 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 485 Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466 | ||||||||||||| | |||||| || |||| | |||||||| | |||||||||| Sbjct: 486 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 543
>ref|XM_475253.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1605 Score = 359 bits (181), Expect = 5e-96 Identities = 309/352 (87%) Strand = Plus / Plus Query: 115 cgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcggagaggg 174 ||||||| ||||||||| |||||| |||||||||||||||||||||||| | ||||||| Sbjct: 5 cgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctgagaggg 64 Query: 175 ttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctcgtgaca 234 | |||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||| Sbjct: 65 tcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccacgtgaca 124 Query: 235 aggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggagattgccc 294 ||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 125 aggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggagattgccc 184 Query: 295 agtatgctgttaggctgttttctggccttgttcggcttcacaatagaacacttaaatttg 354 |||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct: 185 agtatgctgttaagctattttctggccttgttcgtcttcataatagaacacttagatttg 244 Query: 355 cgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacacctaanatga 414 |||| ||||| ||||||||| || || |||| ||| || ||||||||||||| ||| Sbjct: 245 cgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacacctaaagtga 304 Query: 415 accctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466 |||||||||| | |||||| || |||| | |||||||| | |||||||||| Sbjct: 305 accctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 356
>dbj|AK073321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030I04, full insert sequence Length = 1263 Score = 355 bits (179), Expect = 8e-95 Identities = 313/358 (87%) Strand = Plus / Plus Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168 ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| | | Sbjct: 184 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 243 Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228 ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| | Sbjct: 244 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 303 Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288 ||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||| Sbjct: 304 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 363 Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348 |||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| Sbjct: 364 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 423 Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408 ||||||||| ||||| ||||||||| || || |||| ||| || |||||||||||| Sbjct: 424 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 483 Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466 | ||||||||||||| | |||||| || |||| | || ||||| | |||||||||| Sbjct: 484 aagtgaaccctataccgccaccaaagccggctcagctaacgagatctagtgatactcc 541
>gb|AY105066.1| Zea mays PCO110907 mRNA sequence Length = 1274 Score = 341 bits (172), Expect = 1e-90 Identities = 271/304 (89%) Strand = Plus / Plus Query: 89 ccgcctcccagatccggtctccatggcgaggaacccgggctgcgccgtctacataggtaa 148 ||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||| Sbjct: 134 ccgcctcccagatccggcggccatggcaaggaacccgggctgcaccgtcttcataggtaa 193 Query: 149 cttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggtaggtcgtgt 208 ||||||||| ||||| | ||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 194 cttggatgacaaggttcctgagagggttctgtatgaaattcttattcaggtaggtcgtgt 253 Query: 209 agtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggttttgcttttgc 268 |||||| | |||||||||||||||||||||||||| ||||| ||||| | ||||||||| Sbjct: 254 tgtagacctacacatacctcgtgacaaggaaactagccgaccaaaaggctatgcttttgc 313 Query: 269 tgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggccttgttcg 328 |||||| |||||||||||||||||||| |||||||||| ||| |||||||| |||||||| Sbjct: 314 tgagtatgaaacagaggagattgcccaatatgctgttaagctattttctggtcttgttcg 373 Query: 329 gcttcacaatagaacacttaaatttgcgatctctgggcaagacaaggcctcatcaaatgc 388 ||||| |||| ||| |||| |||||||||||||||||||||||| |||||| ||||| Sbjct: 374 acttcataataaaacgcttagatttgcgatctctgggcaagacaaaccctcattaaatgg 433 Query: 389 caat 392 |||| Sbjct: 434 caat 437
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 285 bits (144), Expect = 6e-74 Identities = 198/216 (91%) Strand = Plus / Minus Query: 141 ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200 ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct: 118534 ataggtaacttggatgaaaaggtacctgagagggtcttgtatgagattcttattcaggta 118475 Query: 201 ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260 |||||||| |||||| | |||||||| |||||||||||||||| ||| ||||||||| | Sbjct: 118474 ggtcgtgttgtagacctacacataccacgtgacaaggaaactaatcgctccaaaggttat 118415 Query: 261 gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320 |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 118414 gcttttgctgagtatgaaacagaggagattgcccagtatgctgttaagctattttctggc 118355 Query: 321 cttgttcggcttcacaatagaacacttaaatttgcg 356 |||||||| ||||| ||||||||||||| ||||||| Sbjct: 118354 cttgttcgtcttcataatagaacacttagatttgcg 118319 Score = 54.0 bits (27), Expect = 4e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 397 ctgtaacacctaanatgaaccctataccactaccaaatccacctcaaccaatgagatttg 456 ||||||||||||| ||||||||||||| | |||||| || |||| | |||||||| | Sbjct: 118062 ctgtaacacctaaagtgaaccctataccgccaccaaagccggctcagctaatgagatcta 118003 Query: 457 gtgatactcc 466 |||||||||| Sbjct: 118002 gtgatactcc 117993
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 285 bits (144), Expect = 6e-74 Identities = 198/216 (91%) Strand = Plus / Minus Query: 141 ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200 ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct: 61115 ataggtaacttggatgaaaaggtacctgagagggtcttgtatgagattcttattcaggta 61056 Query: 201 ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260 |||||||| |||||| | |||||||| |||||||||||||||| ||| ||||||||| | Sbjct: 61055 ggtcgtgttgtagacctacacataccacgtgacaaggaaactaatcgctccaaaggttat 60996 Query: 261 gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320 |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 60995 gcttttgctgagtatgaaacagaggagattgcccagtatgctgttaagctattttctggc 60936 Query: 321 cttgttcggcttcacaatagaacacttaaatttgcg 356 |||||||| ||||| ||||||||||||| ||||||| Sbjct: 60935 cttgttcgtcttcataatagaacacttagatttgcg 60900 Score = 54.0 bits (27), Expect = 4e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 397 ctgtaacacctaanatgaaccctataccactaccaaatccacctcaaccaatgagatttg 456 ||||||||||||| ||||||||||||| | |||||| || |||| | |||||||| | Sbjct: 60643 ctgtaacacctaaagtgaaccctataccgccaccaaagccggctcagctaatgagatcta 60584 Query: 457 gtgatactcc 466 |||||||||| Sbjct: 60583 gtgatactcc 60574
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 285 bits (144), Expect = 6e-74 Identities = 198/216 (91%) Strand = Plus / Minus Query: 141 ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200 ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| Sbjct: 20805310 ataggtaacttggatgaaaaggtacctgagagggtcttgtatgagattcttattcaggta 20805251 Query: 201 ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260 |||||||| |||||| | |||||||| |||||||||||||||| ||| ||||||||| | Sbjct: 20805250 ggtcgtgttgtagacctacacataccacgtgacaaggaaactaatcgctccaaaggttat 20805191 Query: 261 gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320 |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 20805190 gcttttgctgagtatgaaacagaggagattgcccagtatgctgttaagctattttctggc 20805131 Query: 321 cttgttcggcttcacaatagaacacttaaatttgcg 356 |||||||| ||||| ||||||||||||| ||||||| Sbjct: 20805130 cttgttcgtcttcataatagaacacttagatttgcg 20805095 Score = 54.0 bits (27), Expect = 4e-04 Identities = 59/70 (84%) Strand = Plus / Minus Query: 397 ctgtaacacctaanatgaaccctataccactaccaaatccacctcaaccaatgagatttg 456 ||||||||||||| ||||||||||||| | |||||| || |||| | |||||||| | Sbjct: 20804838 ctgtaacacctaaagtgaaccctataccgccaccaaagccggctcagctaatgagatcta 20804779 Query: 457 gtgatactcc 466 |||||||||| Sbjct: 20804778 gtgatactcc 20804769
>ref|NM_190122.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 645 Score = 226 bits (114), Expect = 5e-56 Identities = 240/282 (85%) Strand = Plus / Plus Query: 111 atggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcggag 170 |||||||||||||| | || ||||||||||||||||||||||||||||||| | || Sbjct: 1 atggcgaggaaccctacccgcaccgtctacataggtaacttggatgaaaaggtaactgaa 60 Query: 171 agggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctcgt 230 || | ||||||||||||||||||||| |||||||||||||||| | |||||||||| Sbjct: 61 agaatattgtatgagattcttattcagccaggtcgtgtagtagacctatgcatacctcgt 120 Query: 231 gacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggagatt 290 ||||||||||||||| | |||||||||| |||||||||||||| ||||||||||| || Sbjct: 121 gacaaggaaactagttgtcccaaaggttacgcttttgctgagtatgaaacagaggaaatc 180 Query: 291 gcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacacttaaa 350 || |||||||||||| || ||||| || |||||||||||| | || |||||| ||| Sbjct: 181 gcacagtatgctgttcaacttttttcaggacttgttcggctttatggtaaaacactcaaa 240 Query: 351 tttgcgatctctgggcaagacaaggcctcatcaaatgccaat 392 |||||||||||||| |||||||| |||||||||||| |||| Sbjct: 241 tttgcgatctctggacaagacaaaccctcatcaaatggcaat 282
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 4e-38 Identities = 165/192 (85%) Strand = Plus / Plus Query: 141 ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200 ||||||||||||||||||||||| | || || | ||||||||||||||||||||| | Sbjct: 38025588 ataggtaacttggatgaaaaggtaactgaaagaatattgtatgagattcttattcagcca 38025647 Query: 201 ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260 ||||||||||||||| | ||||||||||||||||||||||||| | |||||||||| Sbjct: 38025648 ggtcgtgtagtagacctatgcatacctcgtgacaaggaaactagttgtcccaaaggttac 38025707 Query: 261 gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320 |||||||||||||| ||||||||||| || || |||||||||||| || ||||| || Sbjct: 38025708 gcttttgctgagtatgaaacagaggaaatcgcacagtatgctgttcaacttttttcagga 38025767 Query: 321 cttgttcggctt 332 |||||||||||| Sbjct: 38025768 cttgttcggctt 38025779 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 356 gatctctgggcaagacaaggcctcatcaaatgccaat 392 ||||||||| |||||||| |||||||||||| |||| Sbjct: 38026110 gatctctggacaagacaaaccctcatcaaatggcaat 38026146 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 aaggttttgcttttgctgag 272 |||||||||||||||||||| Sbjct: 28588222 aaggttttgcttttgctgag 28588203
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 167 bits (84), Expect = 4e-38 Identities = 165/192 (85%) Strand = Plus / Plus Query: 141 ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200 ||||||||||||||||||||||| | || || | ||||||||||||||||||||| | Sbjct: 106532 ataggtaacttggatgaaaaggtaactgaaagaatattgtatgagattcttattcagcca 106591 Query: 201 ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260 ||||||||||||||| | ||||||||||||||||||||||||| | |||||||||| Sbjct: 106592 ggtcgtgtagtagacctatgcatacctcgtgacaaggaaactagttgtcccaaaggttac 106651 Query: 261 gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320 |||||||||||||| ||||||||||| || || |||||||||||| || ||||| || Sbjct: 106652 gcttttgctgagtatgaaacagaggaaatcgcacagtatgctgttcaacttttttcagga 106711 Query: 321 cttgttcggctt 332 |||||||||||| Sbjct: 106712 cttgttcggctt 106723 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 356 gatctctgggcaagacaaggcctcatcaaatgccaat 392 ||||||||| |||||||| |||||||||||| |||| Sbjct: 107054 gatctctggacaagacaaaccctcatcaaatggcaat 107090
>gb|BT017814.1| Zea mays clone EL01N0507C03.c mRNA sequence Length = 913 Score = 125 bits (63), Expect = 1e-25 Identities = 179/215 (83%), Gaps = 2/215 (0%) Strand = Plus / Plus Query: 180 tatgagattcttattcaggtaggtcgtgtagtagacttgcacatacc-tcgtgacaagga 238 ||||| ||||||||||| ||| ||||||| ||| || | |||||||| |||||||||||| Sbjct: 2 tatgaaattcttattcacgtacgtcgtgttgtatacctacacataccctcgtgacaagga 61 Query: 239 aactagtcgacccaaaggttttgct-tttgctgagtacgaaacagaggagattgcccagt 297 ||||| ||||| ||||||| |||| ||||||||||| |||||| |||| |||||||| | Sbjct: 62 aactatccgaccaaaaggttatgctatttgctgagtatgaaacaaaggatattgcccaat 121 Query: 298 atgctgttaggctgttttctggccttgttcggcttcacaatagaacacttaaatttgcga 357 |||| ||| ||| ||| |||| |||| || ||||| |||| |||||||| ||| |||| Sbjct: 122 atgccattaagctatttactggacttgctccacttcataataaaacacttagattggcga 181 Query: 358 tctctgggcaagacaaggcctcatcaaatgccaat 392 |||||||| || |||| |||||| ||||| |||| Sbjct: 182 tctctgggaaacacaaaccctcattaaatggcaat 216
>gb|DQ336284.1| Vitis pseudoreticulata RNA recognition motif-containing protein mRNA, complete cds Length = 585 Score = 113 bits (57), Expect = 5e-22 Identities = 171/209 (81%) Strand = Plus / Plus Query: 171 agggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctcgt 230 |||||||||||||| ||||| ||||||| ||| || || || |||||| |||| |||||| Sbjct: 61 agggttttgtatgatattctgattcaggcagggcgggtggtggacttgtacattcctcgt 120 Query: 231 gacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggagatt 290 ||||| |||||| || |||||||||||||| |||||||| || || || ||||| ||| Sbjct: 121 gacaaagaaactgaccggcccaaaggttttgcctttgctgaatatgagactgaggaaatt 180 Query: 291 gcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacacttaaa 350 || | |||||||| | ||| || ||||||||||| || ||||| ||||||| ||| Sbjct: 181 gcagattatgctgtcaagctattctctggccttgtgacactgtacaatcgaacactgaaa 240 Query: 351 tttgcgatctctgggcaagacaaggcctc 379 |||||||| ||||||||||| ||| |||| Sbjct: 241 tttgcgatttctgggcaagataagccctc 269
>gb|BT017106.1| Zea mays clone EL01N0362F08.c mRNA sequence Length = 1237 Score = 101 bits (51), Expect = 2e-18 Identities = 177/219 (80%) Strand = Plus / Plus Query: 111 atggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcggag 170 ||||||||| |||| | | || |||||| ||||||||||||||| |||||||| || ||| Sbjct: 114 atggcgagggacccagcccgcaccgtcttcataggtaacttggacgaaaaggtatctgag 173 Query: 171 agggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctcgt 230 || | |||||||||||||||||||||| ||| | |||||||||| |||| |||| || Sbjct: 174 agaatcttgtatgagattcttattcaggcaggccatgtagtagacctgcatgtacccagt 233 Query: 231 gacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggagatt 290 |||||||| | || | | |||||||| ||||||| |||||| ||||| ||||| || Sbjct: 234 gacaaggagagtaacagtctcaaaggttacgcttttgttgagtatgaaaccgaggaaatc 293 Query: 291 gcccagtatgctgttaggctgttttctggccttgttcgg 329 || || || ||||||| ||| || || || ||||||||| Sbjct: 294 gcacaatacgctgttaagcttttctcaggacttgttcgg 332
>gb|AC139601.8| Medicago truncatula clone mth2-8h11, complete sequence Length = 126204 Score = 48.1 bits (24), Expect = 0.026 Identities = 33/36 (91%) Strand = Plus / Plus Query: 257 ttttgcttttgctgagtacgaaacagaggagattgc 292 |||||||||||| || || ||||||||||||||||| Sbjct: 67292 ttttgcttttgccgaatatgaaacagaggagattgc 67327
>emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6 Length = 307120 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 422 accactaccaaatccacctcaac 444 ||||||||||||||||||||||| Sbjct: 73673 accactaccaaatccacctcaac 73695
>gb|AC116505.13| Mus musculus chromosome 5, clone RP24-302O2, complete sequence Length = 178695 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 taggctgttttctggccttg 324 |||||||||||||||||||| Sbjct: 176112 taggctgttttctggccttg 176131
>ref|XM_464330.1| Oryza sativa (japonica cultivar-group), mRNA Length = 261 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 aaggttttgcttttgctgag 272 |||||||||||||||||||| Sbjct: 226 aaggttttgcttttgctgag 245
>ref|NM_013544.2| Mus musculus histocompatibility 2, M region locus 10.1 (H2-M10.1), mRNA Length = 1399 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 gtctacataggtaacttggatgaa 158 ||||||||||||||| |||||||| Sbjct: 159 gtctacataggtaacctggatgaa 136
>gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, complete sequence Length = 239361 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ttaggctgttttctggcctt 323 |||||||||||||||||||| Sbjct: 234209 ttaggctgttttctggcctt 234190
>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence Length = 260989 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ttaggctgttttctggcctt 323 |||||||||||||||||||| Sbjct: 62654 ttaggctgttttctggcctt 62635
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 acaatagaacacttaaattt 353 |||||||||||||||||||| Sbjct: 92438 acaatagaacacttaaattt 92457
>emb|BX936305.18| Zebrafish DNA sequence from clone CH211-51N3 in linkage group 13, complete sequence Length = 150383 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 tgtatgagattcttattcag 197 |||||||||||||||||||| Sbjct: 129564 tgtatgagattcttattcag 129583
>emb|BX914217.19| Zebrafish DNA sequence from clone DKEY-175H14 in linkage group 18, complete sequence Length = 133981 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tgtatgagattcttattcag 197 |||||||||||||||||||| Sbjct: 15275 tgtatgagattcttattcag 15256
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 acaatagaacacttaaattt 353 |||||||||||||||||||| Sbjct: 32733002 acaatagaacacttaaattt 32733021
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 aaggttttgcttttgctgag 272 |||||||||||||||||||| Sbjct: 4531635 aaggttttgcttttgctgag 4531616
>gb|AY211079.1| Mus musculus major histocompatibility complex class Ib M10.2 mRNA, complete cds Length = 1399 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 gtctacataggtaacttggatgaa 158 ||||||||||||||| |||||||| Sbjct: 159 gtctacataggtaacctggatgaa 136
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 aaggttttgcttttgctgag 272 |||||||||||||||||||| Sbjct: 114661 aaggttttgcttttgctgag 114642
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 aaggttttgcttttgctgag 272 |||||||||||||||||||| Sbjct: 67014 aaggttttgcttttgctgag 66995
>emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0423H10, complete sequence Length = 76529 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 acaatagaacacttaaattt 353 |||||||||||||||||||| Sbjct: 65944 acaatagaacacttaaattt 65963
>gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, complete sequence Length = 215671 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 taggctgttttctggccttg 324 |||||||||||||||||||| Sbjct: 197613 taggctgttttctggccttg 197594
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 cacttaaatttgcgatctct 362 |||||||||||||||||||| Sbjct: 1360379 cacttaaatttgcgatctct 1360398 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,252,293 Number of Sequences: 3902068 Number of extensions: 3252293 Number of successful extensions: 56047 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55857 Number of HSP's gapped (non-prelim): 174 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)