ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart58f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK061869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
2dbj|AK120426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
3dbj|AK099731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
4dbj|AK104745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
5dbj|AK060130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 363 3e-97
6ref|XM_475253.1| Oryza sativa (japonica cultivar-group), predic... 359 5e-96
7dbj|AK073321.1| Oryza sativa (japonica cultivar-group) cDNA clon... 355 8e-95
8gb|AY105066.1| Zea mays PCO110907 mRNA sequence 341 1e-90
9gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome... 285 6e-74
10gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome... 285 6e-74
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 285 6e-74
12ref|NM_190122.1| Oryza sativa (japonica cultivar-group), predic... 226 5e-56
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
14dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
15gb|BT017814.1| Zea mays clone EL01N0507C03.c mRNA sequence 125 1e-25
16gb|DQ336284.1| Vitis pseudoreticulata RNA recognition motif-cont... 113 5e-22
17gb|BT017106.1| Zea mays clone EL01N0362F08.c mRNA sequence 101 2e-18
18gb|AC139601.8| Medicago truncatula clone mth2-8h11, complete seq... 48 0.026
19emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segme... 46 0.10
20gb|AC116505.13| Mus musculus chromosome 5, clone RP24-302O2, com... 40 6.3
21ref|XM_464330.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
22ref|NM_013544.2| Mus musculus histocompatibility 2, M region loc... 40 6.3
23gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, comp... 40 6.3
24gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome... 40 6.3
25emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
26emb|BX936305.18| Zebrafish DNA sequence from clone CH211-51N3 in... 40 6.3
27emb|BX914217.19| Zebrafish DNA sequence from clone DKEY-175H14 i... 40 6.3
28dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
30gb|AY211079.1| Mus musculus major histocompatibility complex cla... 40 6.3
31dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
32dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
33emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.3
34gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, com... 40 6.3
35gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 40 6.3

>dbj|AK061869.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A02, full
           insert sequence
          Length = 1060

 Score =  363 bits (183), Expect = 3e-97
 Identities = 314/358 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168
           ||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||  | |
Sbjct: 186 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 245

                                                                       
Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228
           ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| |
Sbjct: 246 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 305

                                                                       
Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288
           ||||||||||||||| |||  ||||||||| ||||||||||||||| |||||||||||||
Sbjct: 306 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 365

                                                                       
Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348
           |||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 366 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 425

                                                                       
Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408
            ||||||||| ||||| |||||||||   || || ||||  ||| || ||||||||||||
Sbjct: 426 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 485

                                                                     
Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466
           |  ||||||||||||| | |||||| ||  |||| | |||||||| | ||||||||||
Sbjct: 486 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 543



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>dbj|AK120426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095G08, full
           insert sequence
          Length = 1875

 Score =  363 bits (183), Expect = 3e-97
 Identities = 314/358 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168
           ||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||  | |
Sbjct: 187 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 246

                                                                       
Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228
           ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| |
Sbjct: 247 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 306

                                                                       
Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288
           ||||||||||||||| |||  ||||||||| ||||||||||||||| |||||||||||||
Sbjct: 307 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 366

                                                                       
Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348
           |||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 367 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 426

                                                                       
Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408
            ||||||||| ||||| |||||||||   || || ||||  ||| || ||||||||||||
Sbjct: 427 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 486

                                                                     
Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466
           |  ||||||||||||| | |||||| ||  |||| | |||||||| | ||||||||||
Sbjct: 487 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 544



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>dbj|AK099731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089N11, full
           insert sequence
          Length = 1333

 Score =  363 bits (183), Expect = 3e-97
 Identities = 314/358 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168
           ||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||  | |
Sbjct: 187 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 246

                                                                       
Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228
           ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| |
Sbjct: 247 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 306

                                                                       
Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288
           ||||||||||||||| |||  ||||||||| ||||||||||||||| |||||||||||||
Sbjct: 307 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 366

                                                                       
Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348
           |||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 367 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 426

                                                                       
Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408
            ||||||||| ||||| |||||||||   || || ||||  ||| || ||||||||||||
Sbjct: 427 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 486

                                                                     
Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466
           |  ||||||||||||| | |||||| ||  |||| | |||||||| | ||||||||||
Sbjct: 487 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 544



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>dbj|AK104745.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E05, full
           insert sequence
          Length = 1251

 Score =  363 bits (183), Expect = 3e-97
 Identities = 314/358 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168
           ||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||  | |
Sbjct: 186 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 245

                                                                       
Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228
           ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| |
Sbjct: 246 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 305

                                                                       
Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288
           ||||||||||||||| |||  ||||||||| ||||||||||||||| |||||||||||||
Sbjct: 306 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 365

                                                                       
Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348
           |||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 366 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 425

                                                                       
Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408
            ||||||||| ||||| |||||||||   || || ||||  ||| || ||||||||||||
Sbjct: 426 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 485

                                                                     
Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466
           |  ||||||||||||| | |||||| ||  |||| | |||||||| | ||||||||||
Sbjct: 486 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 543



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>dbj|AK060130.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A11, full
           insert sequence
          Length = 1251

 Score =  363 bits (183), Expect = 3e-97
 Identities = 314/358 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168
           ||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||  | |
Sbjct: 186 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 245

                                                                       
Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228
           ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| |
Sbjct: 246 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 305

                                                                       
Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288
           ||||||||||||||| |||  ||||||||| ||||||||||||||| |||||||||||||
Sbjct: 306 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 365

                                                                       
Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348
           |||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 366 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 425

                                                                       
Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408
            ||||||||| ||||| |||||||||   || || ||||  ||| || ||||||||||||
Sbjct: 426 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 485

                                                                     
Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466
           |  ||||||||||||| | |||||| ||  |||| | |||||||| | ||||||||||
Sbjct: 486 aagtgaaccctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 543



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>ref|XM_475253.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1605

 Score =  359 bits (181), Expect = 5e-96
 Identities = 309/352 (87%)
 Strand = Plus / Plus

                                                                       
Query: 115 cgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcggagaggg 174
           ||||||| ||||||||| |||||| ||||||||||||||||||||||||  | |||||||
Sbjct: 5   cgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctgagaggg 64

                                                                       
Query: 175 ttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctcgtgaca 234
           | |||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||
Sbjct: 65  tcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccacgtgaca 124

                                                                       
Query: 235 aggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggagattgccc 294
           ||||||||| |||  ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 125 aggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggagattgccc 184

                                                                       
Query: 295 agtatgctgttaggctgttttctggccttgttcggcttcacaatagaacacttaaatttg 354
           |||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct: 185 agtatgctgttaagctattttctggccttgttcgtcttcataatagaacacttagatttg 244

                                                                       
Query: 355 cgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacacctaanatga 414
           |||| ||||| |||||||||   || || ||||  ||| || |||||||||||||  |||
Sbjct: 245 cgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacacctaaagtga 304

                                                               
Query: 415 accctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466
           |||||||||| | |||||| ||  |||| | |||||||| | ||||||||||
Sbjct: 305 accctataccgccaccaaagccggctcagctaatgagatctagtgatactcc 356



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>dbj|AK073321.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030I04, full
           insert sequence
          Length = 1263

 Score =  355 bits (179), Expect = 8e-95
 Identities = 313/358 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 ccatggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcgg 168
           ||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||  | |
Sbjct: 184 ccatgtcgaggaatccgggctgcaccgtcttcataggtaacttggatgaaaaggtacctg 243

                                                                       
Query: 169 agagggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctc 228
           ||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| |
Sbjct: 244 agagggtcttgtatgagattcttattcaggtaggtcgtgttgtagacctacacataccac 303

                                                                       
Query: 229 gtgacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggaga 288
           ||||||||||||||| |||  ||||||||| ||||||||||||||| |||||||||||||
Sbjct: 304 gtgacaaggaaactaatcgctccaaaggttatgcttttgctgagtatgaaacagaggaga 363

                                                                       
Query: 289 ttgcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacactta 348
           |||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 364 ttgcccagtatgctgttaagctattttctggccttgttcgtcttcataatagaacactta 423

                                                                       
Query: 349 aatttgcgatctctgggcaagacaaggcctcatcaaatgccaatgttactgtaacaccta 408
            ||||||||| ||||| |||||||||   || || ||||  ||| || ||||||||||||
Sbjct: 424 gatttgcgatttctggacaagacaagcaatcttctaatggaaatattcctgtaacaccta 483

                                                                     
Query: 409 anatgaaccctataccactaccaaatccacctcaaccaatgagatttggtgatactcc 466
           |  ||||||||||||| | |||||| ||  |||| | || ||||| | ||||||||||
Sbjct: 484 aagtgaaccctataccgccaccaaagccggctcagctaacgagatctagtgatactcc 541



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>gb|AY105066.1| Zea mays PCO110907 mRNA sequence
          Length = 1274

 Score =  341 bits (172), Expect = 1e-90
 Identities = 271/304 (89%)
 Strand = Plus / Plus

                                                                       
Query: 89  ccgcctcccagatccggtctccatggcgaggaacccgggctgcgccgtctacataggtaa 148
           |||||||||||||||||   ||||||| ||||||||||||||| |||||| |||||||||
Sbjct: 134 ccgcctcccagatccggcggccatggcaaggaacccgggctgcaccgtcttcataggtaa 193

                                                                       
Query: 149 cttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggtaggtcgtgt 208
           ||||||||| |||||  | ||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 194 cttggatgacaaggttcctgagagggttctgtatgaaattcttattcaggtaggtcgtgt 253

                                                                       
Query: 209 agtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggttttgcttttgc 268
            |||||| | |||||||||||||||||||||||||| ||||| ||||| | |||||||||
Sbjct: 254 tgtagacctacacatacctcgtgacaaggaaactagccgaccaaaaggctatgcttttgc 313

                                                                       
Query: 269 tgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggccttgttcg 328
           |||||| |||||||||||||||||||| |||||||||| ||| |||||||| ||||||||
Sbjct: 314 tgagtatgaaacagaggagattgcccaatatgctgttaagctattttctggtcttgttcg 373

                                                                       
Query: 329 gcttcacaatagaacacttaaatttgcgatctctgggcaagacaaggcctcatcaaatgc 388
            ||||| |||| ||| |||| ||||||||||||||||||||||||  |||||| ||||| 
Sbjct: 374 acttcataataaaacgcttagatttgcgatctctgggcaagacaaaccctcattaaatgg 433

               
Query: 389 caat 392
           ||||
Sbjct: 434 caat 437



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>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19,
              complete sequence
          Length = 176917

 Score =  285 bits (144), Expect = 6e-74
 Identities = 198/216 (91%)
 Strand = Plus / Minus

                                                                          
Query: 141    ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200
              |||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||
Sbjct: 118534 ataggtaacttggatgaaaaggtacctgagagggtcttgtatgagattcttattcaggta 118475

                                                                          
Query: 201    ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260
              |||||||| |||||| | |||||||| |||||||||||||||| |||  ||||||||| |
Sbjct: 118474 ggtcgtgttgtagacctacacataccacgtgacaaggaaactaatcgctccaaaggttat 118415

                                                                          
Query: 261    gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320
              |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 118414 gcttttgctgagtatgaaacagaggagattgcccagtatgctgttaagctattttctggc 118355

                                                  
Query: 321    cttgttcggcttcacaatagaacacttaaatttgcg 356
              |||||||| ||||| ||||||||||||| |||||||
Sbjct: 118354 cttgttcgtcttcataatagaacacttagatttgcg 118319



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                          
Query: 397    ctgtaacacctaanatgaaccctataccactaccaaatccacctcaaccaatgagatttg 456
              |||||||||||||  ||||||||||||| | |||||| ||  |||| | |||||||| | 
Sbjct: 118062 ctgtaacacctaaagtgaaccctataccgccaccaaagccggctcagctaatgagatcta 118003

                        
Query: 457    gtgatactcc 466
              ||||||||||
Sbjct: 118002 gtgatactcc 117993



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>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09,
             complete sequence
          Length = 177374

 Score =  285 bits (144), Expect = 6e-74
 Identities = 198/216 (91%)
 Strand = Plus / Minus

                                                                         
Query: 141   ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200
             |||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||
Sbjct: 61115 ataggtaacttggatgaaaaggtacctgagagggtcttgtatgagattcttattcaggta 61056

                                                                         
Query: 201   ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260
             |||||||| |||||| | |||||||| |||||||||||||||| |||  ||||||||| |
Sbjct: 61055 ggtcgtgttgtagacctacacataccacgtgacaaggaaactaatcgctccaaaggttat 60996

                                                                         
Query: 261   gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320
             |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 60995 gcttttgctgagtatgaaacagaggagattgcccagtatgctgttaagctattttctggc 60936

                                                 
Query: 321   cttgttcggcttcacaatagaacacttaaatttgcg 356
             |||||||| ||||| ||||||||||||| |||||||
Sbjct: 60935 cttgttcgtcttcataatagaacacttagatttgcg 60900



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 397   ctgtaacacctaanatgaaccctataccactaccaaatccacctcaaccaatgagatttg 456
             |||||||||||||  ||||||||||||| | |||||| ||  |||| | |||||||| | 
Sbjct: 60643 ctgtaacacctaaagtgaaccctataccgccaccaaagccggctcagctaatgagatcta 60584

                       
Query: 457   gtgatactcc 466
             ||||||||||
Sbjct: 60583 gtgatactcc 60574



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  285 bits (144), Expect = 6e-74
 Identities = 198/216 (91%)
 Strand = Plus / Minus

                                                                            
Query: 141      ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200
                |||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||
Sbjct: 20805310 ataggtaacttggatgaaaaggtacctgagagggtcttgtatgagattcttattcaggta 20805251

                                                                            
Query: 201      ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260
                |||||||| |||||| | |||||||| |||||||||||||||| |||  ||||||||| |
Sbjct: 20805250 ggtcgtgttgtagacctacacataccacgtgacaaggaaactaatcgctccaaaggttat 20805191

                                                                            
Query: 261      gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320
                |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 20805190 gcttttgctgagtatgaaacagaggagattgcccagtatgctgttaagctattttctggc 20805131

                                                    
Query: 321      cttgttcggcttcacaatagaacacttaaatttgcg 356
                |||||||| ||||| ||||||||||||| |||||||
Sbjct: 20805130 cttgttcgtcttcataatagaacacttagatttgcg 20805095



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 397      ctgtaacacctaanatgaaccctataccactaccaaatccacctcaaccaatgagatttg 456
                |||||||||||||  ||||||||||||| | |||||| ||  |||| | |||||||| | 
Sbjct: 20804838 ctgtaacacctaaagtgaaccctataccgccaccaaagccggctcagctaatgagatcta 20804779

                          
Query: 457      gtgatactcc 466
                ||||||||||
Sbjct: 20804778 gtgatactcc 20804769



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>ref|NM_190122.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 645

 Score =  226 bits (114), Expect = 5e-56
 Identities = 240/282 (85%)
 Strand = Plus / Plus

                                                                       
Query: 111 atggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcggag 170
           ||||||||||||||   | || |||||||||||||||||||||||||||||||  | || 
Sbjct: 1   atggcgaggaaccctacccgcaccgtctacataggtaacttggatgaaaaggtaactgaa 60

                                                                       
Query: 171 agggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctcgt 230
           ||  | |||||||||||||||||||||  |||||||||||||||| |   ||||||||||
Sbjct: 61  agaatattgtatgagattcttattcagccaggtcgtgtagtagacctatgcatacctcgt 120

                                                                       
Query: 231 gacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggagatt 290
           ||||||||||||||| | ||||||||||  |||||||||||||| ||||||||||| || 
Sbjct: 121 gacaaggaaactagttgtcccaaaggttacgcttttgctgagtatgaaacagaggaaatc 180

                                                                       
Query: 291 gcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacacttaaa 350
           || ||||||||||||   || ||||| || |||||||||||| |   || |||||| |||
Sbjct: 181 gcacagtatgctgttcaacttttttcaggacttgttcggctttatggtaaaacactcaaa 240

                                                     
Query: 351 tttgcgatctctgggcaagacaaggcctcatcaaatgccaat 392
           |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 241 tttgcgatctctggacaagacaaaccctcatcaaatggcaat 282



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  167 bits (84), Expect = 4e-38
 Identities = 165/192 (85%)
 Strand = Plus / Plus

                                                                            
Query: 141      ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200
                |||||||||||||||||||||||  | || ||  | |||||||||||||||||||||  |
Sbjct: 38025588 ataggtaacttggatgaaaaggtaactgaaagaatattgtatgagattcttattcagcca 38025647

                                                                            
Query: 201      ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260
                ||||||||||||||| |   ||||||||||||||||||||||||| | ||||||||||  
Sbjct: 38025648 ggtcgtgtagtagacctatgcatacctcgtgacaaggaaactagttgtcccaaaggttac 38025707

                                                                            
Query: 261      gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320
                |||||||||||||| ||||||||||| || || ||||||||||||   || ||||| || 
Sbjct: 38025708 gcttttgctgagtatgaaacagaggaaatcgcacagtatgctgttcaacttttttcagga 38025767

                            
Query: 321      cttgttcggctt 332
                ||||||||||||
Sbjct: 38025768 cttgttcggctt 38025779



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 356      gatctctgggcaagacaaggcctcatcaaatgccaat 392
                ||||||||| ||||||||  |||||||||||| ||||
Sbjct: 38026110 gatctctggacaagacaaaccctcatcaaatggcaat 38026146



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 253      aaggttttgcttttgctgag 272
                ||||||||||||||||||||
Sbjct: 28588222 aaggttttgcttttgctgag 28588203



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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score =  167 bits (84), Expect = 4e-38
 Identities = 165/192 (85%)
 Strand = Plus / Plus

                                                                          
Query: 141    ataggtaacttggatgaaaaggtctcggagagggttttgtatgagattcttattcaggta 200
              |||||||||||||||||||||||  | || ||  | |||||||||||||||||||||  |
Sbjct: 106532 ataggtaacttggatgaaaaggtaactgaaagaatattgtatgagattcttattcagcca 106591

                                                                          
Query: 201    ggtcgtgtagtagacttgcacatacctcgtgacaaggaaactagtcgacccaaaggtttt 260
              ||||||||||||||| |   ||||||||||||||||||||||||| | ||||||||||  
Sbjct: 106592 ggtcgtgtagtagacctatgcatacctcgtgacaaggaaactagttgtcccaaaggttac 106651

                                                                          
Query: 261    gcttttgctgagtacgaaacagaggagattgcccagtatgctgttaggctgttttctggc 320
              |||||||||||||| ||||||||||| || || ||||||||||||   || ||||| || 
Sbjct: 106652 gcttttgctgagtatgaaacagaggaaatcgcacagtatgctgttcaacttttttcagga 106711

                          
Query: 321    cttgttcggctt 332
              ||||||||||||
Sbjct: 106712 cttgttcggctt 106723



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 356    gatctctgggcaagacaaggcctcatcaaatgccaat 392
              ||||||||| ||||||||  |||||||||||| ||||
Sbjct: 107054 gatctctggacaagacaaaccctcatcaaatggcaat 107090



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>gb|BT017814.1| Zea mays clone EL01N0507C03.c mRNA sequence
          Length = 913

 Score =  125 bits (63), Expect = 1e-25
 Identities = 179/215 (83%), Gaps = 2/215 (0%)
 Strand = Plus / Plus

                                                                       
Query: 180 tatgagattcttattcaggtaggtcgtgtagtagacttgcacatacc-tcgtgacaagga 238
           ||||| ||||||||||| ||| ||||||| ||| || | |||||||| ||||||||||||
Sbjct: 2   tatgaaattcttattcacgtacgtcgtgttgtatacctacacataccctcgtgacaagga 61

                                                                       
Query: 239 aactagtcgacccaaaggttttgct-tttgctgagtacgaaacagaggagattgcccagt 297
           |||||  ||||| ||||||| |||| ||||||||||| |||||| |||| |||||||| |
Sbjct: 62  aactatccgaccaaaaggttatgctatttgctgagtatgaaacaaaggatattgcccaat 121

                                                                       
Query: 298 atgctgttaggctgttttctggccttgttcggcttcacaatagaacacttaaatttgcga 357
           ||||  ||| ||| ||| |||| |||| ||  ||||| |||| |||||||| ||| ||||
Sbjct: 122 atgccattaagctatttactggacttgctccacttcataataaaacacttagattggcga 181

                                              
Query: 358 tctctgggcaagacaaggcctcatcaaatgccaat 392
           |||||||| || ||||  |||||| ||||| ||||
Sbjct: 182 tctctgggaaacacaaaccctcattaaatggcaat 216



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>gb|DQ336284.1| Vitis pseudoreticulata RNA recognition motif-containing protein
           mRNA, complete cds
          Length = 585

 Score =  113 bits (57), Expect = 5e-22
 Identities = 171/209 (81%)
 Strand = Plus / Plus

                                                                       
Query: 171 agggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctcgt 230
           |||||||||||||| ||||| ||||||| ||| || || || |||||| |||| ||||||
Sbjct: 61  agggttttgtatgatattctgattcaggcagggcgggtggtggacttgtacattcctcgt 120

                                                                       
Query: 231 gacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggagatt 290
           ||||| ||||||   || |||||||||||||| |||||||| || || || ||||| |||
Sbjct: 121 gacaaagaaactgaccggcccaaaggttttgcctttgctgaatatgagactgaggaaatt 180

                                                                       
Query: 291 gcccagtatgctgttaggctgttttctggccttgttcggcttcacaatagaacacttaaa 350
           ||  | |||||||| | ||| || |||||||||||    ||  ||||| ||||||| |||
Sbjct: 181 gcagattatgctgtcaagctattctctggccttgtgacactgtacaatcgaacactgaaa 240

                                        
Query: 351 tttgcgatctctgggcaagacaaggcctc 379
           |||||||| ||||||||||| ||| ||||
Sbjct: 241 tttgcgatttctgggcaagataagccctc 269



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>gb|BT017106.1| Zea mays clone EL01N0362F08.c mRNA sequence
          Length = 1237

 Score =  101 bits (51), Expect = 2e-18
 Identities = 177/219 (80%)
 Strand = Plus / Plus

                                                                       
Query: 111 atggcgaggaacccgggctgcgccgtctacataggtaacttggatgaaaaggtctcggag 170
           ||||||||| |||| | | || |||||| ||||||||||||||| |||||||| || |||
Sbjct: 114 atggcgagggacccagcccgcaccgtcttcataggtaacttggacgaaaaggtatctgag 173

                                                                       
Query: 171 agggttttgtatgagattcttattcaggtaggtcgtgtagtagacttgcacatacctcgt 230
           ||  | |||||||||||||||||||||| ||| | |||||||||| ||||  ||||  ||
Sbjct: 174 agaatcttgtatgagattcttattcaggcaggccatgtagtagacctgcatgtacccagt 233

                                                                       
Query: 231 gacaaggaaactagtcgacccaaaggttttgcttttgctgagtacgaaacagaggagatt 290
           |||||||| | ||   | | ||||||||  ||||||| |||||| ||||| ||||| || 
Sbjct: 234 gacaaggagagtaacagtctcaaaggttacgcttttgttgagtatgaaaccgaggaaatc 293

                                                  
Query: 291 gcccagtatgctgttaggctgttttctggccttgttcgg 329
           || || || ||||||| ||| || || || |||||||||
Sbjct: 294 gcacaatacgctgttaagcttttctcaggacttgttcgg 332



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>gb|AC139601.8| Medicago truncatula clone mth2-8h11, complete sequence
          Length = 126204

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 257   ttttgcttttgctgagtacgaaacagaggagattgc 292
             |||||||||||| || || |||||||||||||||||
Sbjct: 67292 ttttgcttttgccgaatatgaaacagaggagattgc 67327



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>emb|AJ248285.1|CNSPAX03 Pyrococcus abyssi complete genome; segment 3/6
          Length = 307120

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 422   accactaccaaatccacctcaac 444
             |||||||||||||||||||||||
Sbjct: 73673 accactaccaaatccacctcaac 73695



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>gb|AC116505.13| Mus musculus chromosome 5, clone RP24-302O2, complete sequence
          Length = 178695

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    taggctgttttctggccttg 324
              ||||||||||||||||||||
Sbjct: 176112 taggctgttttctggccttg 176131



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>ref|XM_464330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 261

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 aaggttttgcttttgctgag 272
           ||||||||||||||||||||
Sbjct: 226 aaggttttgcttttgctgag 245



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>ref|NM_013544.2| Mus musculus histocompatibility 2, M region locus 10.1 (H2-M10.1),
           mRNA
          Length = 1399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 135 gtctacataggtaacttggatgaa 158
           ||||||||||||||| ||||||||
Sbjct: 159 gtctacataggtaacctggatgaa 136



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>gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, complete sequence
          Length = 239361

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    ttaggctgttttctggcctt 323
              ||||||||||||||||||||
Sbjct: 234209 ttaggctgttttctggcctt 234190



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>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence
          Length = 260989

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   ttaggctgttttctggcctt 323
             ||||||||||||||||||||
Sbjct: 62654 ttaggctgttttctggcctt 62635



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>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
             complete sequence
          Length = 150416

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   acaatagaacacttaaattt 353
             ||||||||||||||||||||
Sbjct: 92438 acaatagaacacttaaattt 92457



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>emb|BX936305.18| Zebrafish DNA sequence from clone CH211-51N3 in linkage group 13,
              complete sequence
          Length = 150383

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    tgtatgagattcttattcag 197
              ||||||||||||||||||||
Sbjct: 129564 tgtatgagattcttattcag 129583



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>emb|BX914217.19| Zebrafish DNA sequence from clone DKEY-175H14 in linkage group 18,
             complete sequence
          Length = 133981

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tgtatgagattcttattcag 197
             ||||||||||||||||||||
Sbjct: 15275 tgtatgagattcttattcag 15256



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 334      acaatagaacacttaaattt 353
                ||||||||||||||||||||
Sbjct: 32733002 acaatagaacacttaaattt 32733021



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 253     aaggttttgcttttgctgag 272
               ||||||||||||||||||||
Sbjct: 4531635 aaggttttgcttttgctgag 4531616



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>gb|AY211079.1| Mus musculus major histocompatibility complex class Ib M10.2 mRNA,
           complete cds
          Length = 1399

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 135 gtctacataggtaacttggatgaa 158
           ||||||||||||||| ||||||||
Sbjct: 159 gtctacataggtaacctggatgaa 136



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>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0034C09
          Length = 170226

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    aaggttttgcttttgctgag 272
              ||||||||||||||||||||
Sbjct: 114661 aaggttttgcttttgctgag 114642



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>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1297_C09
          Length = 163378

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   aaggttttgcttttgctgag 272
             ||||||||||||||||||||
Sbjct: 67014 aaggttttgcttttgctgag 66995



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>emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0423H10, complete
             sequence
          Length = 76529

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   acaatagaacacttaaattt 353
             ||||||||||||||||||||
Sbjct: 65944 acaatagaacacttaaattt 65963



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>gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, complete sequence
          Length = 215671

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    taggctgttttctggccttg 324
              ||||||||||||||||||||
Sbjct: 197613 taggctgttttctggccttg 197594



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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     cacttaaatttgcgatctct 362
               ||||||||||||||||||||
Sbjct: 1360379 cacttaaatttgcgatctct 1360398


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,252,293
Number of Sequences: 3902068
Number of extensions: 3252293
Number of successful extensions: 56047
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55857
Number of HSP's gapped (non-prelim): 174
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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