ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58e10 |
|---|---|
| Clone Library Name | barley_pub |
>DXR_KITGR (Q9AJD7) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 386 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +3 Query: 204 LILGSTGIVGTSLLDILPRDDTPGGLWKVYAVXXXXXXXXXXXXXXXXVTHLQLDLADPA 383 +ILGSTG +GT +D++ R+ G +KV A+ + + +ADPA Sbjct: 2 VILGSTGSIGTQAIDVVLRNP---GRFKVVALSAAGGAVELLAEQAVALGVHTVAVADPA 58 Query: 384 AVKDA 398 A + A Sbjct: 59 AEEAA 63
>BIRC6_HUMAN (Q9NR09) Baculoviral IAP repeat-containing protein 6| (Ubiquitin-conjugating BIR-domain enzyme apollon) Length = 4829 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = -1 Query: 271 GVSSRGRMSRREVPTIPVEPRMSATLWKVGSAAAARSSCRFLTAPTAPAHHQLIAG 104 G+ S+ + + P P R K+GS + A ++ + +T P H+L+AG Sbjct: 3891 GLKSQSKRAVSATPPRPPSRRGRTIPDKIGSTSGAEAANKIITVPVFHLFHKLLAG 3946
>DXR_GLUOX (Q5FPZ1) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 408 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 174 AAEPTFQSVALILGSTGIVGTSLLDILPR 260 +A PT + + +LGSTG +GTS +D+L R Sbjct: 5 SARPTRRRIT-VLGSTGSIGTSTVDLLAR 32
>HSCA_CHRVO (Q7NZ33) Chaperone protein hscA homolog| Length = 619 Score = 29.3 bits (64), Expect = 4.6 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 13/75 (17%) Frame = -1 Query: 271 GVSSRGRMSRREVP---TIPVEPRMSATLWKVGSAAAAR----------SSCRFLTAPTA 131 G+ + G ++ + +P TIPV T +K G A + S CR L T Sbjct: 400 GIETMGGLTEKIIPRNSTIPVARAQDFTTFKDGQTAMSIHVLQGERELVSDCRSLAKFTL 459 Query: 130 PAHHQLIAGAERIRL 86 ++AGA RIR+ Sbjct: 460 TGIPPMVAGAARIRI 474
>DXR_BORPE (Q7VYC4) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 399 Score = 29.3 bits (64), Expect = 4.6 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = +3 Query: 189 FQSVALILGSTGIVGTSLLDILPRDDTPGGLWKVYA 296 FQ VA +LGSTG +G S LD++ R G++ + A Sbjct: 4 FQRVA-VLGSTGSIGDSTLDVIARHPDRLGVYALSA 38
>DXR_BORPA (Q7WA54) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 399 Score = 29.3 bits (64), Expect = 4.6 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = +3 Query: 189 FQSVALILGSTGIVGTSLLDILPRDDTPGGLWKVYA 296 FQ VA +LGSTG +G S LD++ R G++ + A Sbjct: 4 FQRVA-VLGSTGSIGDSTLDVIARHPDRLGVYALSA 38
>DXR_BORBR (Q7WJ88) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 399 Score = 29.3 bits (64), Expect = 4.6 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = +3 Query: 189 FQSVALILGSTGIVGTSLLDILPRDDTPGGLWKVYA 296 FQ VA +LGSTG +G S LD++ R G++ + A Sbjct: 4 FQRVA-VLGSTGSIGDSTLDVIARHPDRLGVYALSA 38
>TLRC_STRFR (P25256) Tylosin resistance ATP-binding protein tlrC| Length = 548 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = +2 Query: 44 RDEQADRRQSLTPLQPDPLRPR 109 RDEQADRR SL +P+ LR R Sbjct: 445 RDEQADRRLSLGLFEPEALRLR 466
>MIA40_ASPFU (Q4WGL2) Intermembrane space import and assembly protein 40,| mitochondrial precursor (Mitochondrial import inner membrane translocase TIM40) Length = 297 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%) Frame = -1 Query: 274 PGVSSRGRMSRREVPTIPVEPR---MSATLWKVGSAAAA 167 PGV++RG +SRR + T P + + +T+ ++G AA A Sbjct: 13 PGVAARGPVSRRLISTAPPDAKSRSWKSTIVRLGLAAGA 51
>DXR_RHIME (Q92LP6) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 391 Score = 28.9 bits (63), Expect = 6.0 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +3 Query: 207 ILGSTGIVGTSLLDILPR 260 ILGSTG +GTS LD++ R Sbjct: 13 ILGSTGSIGTSTLDVIER 30
>PANX2_MOUSE (Q6IMP4) Pannexin-2| Length = 607 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +2 Query: 2 PHRPISTPPTVTCSRDEQADRRQSLTPLQPDPLRPRDELV 121 P R TP ++ C D S P QP PL P + V Sbjct: 559 PRRKSRTPQSLPCQGSHLGDHSMSAHPPQPPPLLPCHQAV 598
>DXR_BIFLO (Q8G7Y7) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 396 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 Query: 195 SVALILGSTGIVGTSLLDILPR 260 S +ILGSTG +GT LD++ R Sbjct: 7 STVIILGSTGSIGTQGLDVISR 28 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.142 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,616,792 Number of Sequences: 219361 Number of extensions: 456560 Number of successful extensions: 1432 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1407 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1432 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
