Clone Name | bart58e01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK100038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151D12, full insert sequence Length = 1721 Score = 159 bits (80), Expect = 1e-35 Identities = 173/204 (84%) Strand = Plus / Plus Query: 251 caagatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgc 310 |||||||||| ||| || |||||||| ||||||| | | ||||| ||| ||| ||||| Sbjct: 189 caagatgtctaatctatcagagccctcaaaagaagctgcatcagctgatgattcaagtgc 248 Query: 311 tctccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagt 370 | |||| ||||||||||||||||||| || |||| || |||| | || ||||||||||| Sbjct: 249 tgtccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaagcttcagt 308 Query: 371 gtatggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatg 430 ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 309 ctatggtgtggctgctggttattgcctgtcagcatccctgctctccattatcaacaaatg 368 Query: 431 ggcaatcatgaaattcccgtaccc 454 |||| |||||||||| || ||||| Sbjct: 369 ggcagtcatgaaatttccataccc 392
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 155 bits (78), Expect = 1e-34 Identities = 171/202 (84%) Strand = Plus / Minus Query: 253 agatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgctc 312 |||||||| ||| || |||||||| ||||||| | | ||||| ||| ||| |||||| Sbjct: 5982978 agatgtctaatctatcagagccctcaaaagaagctgcatcagctgatgattcaagtgctg 5982919 Query: 313 tccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgt 372 |||| ||||||||||||||||||| || |||| || |||| | || ||||||||||| | Sbjct: 5982918 tccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaagcttcagtct 5982859 Query: 373 atggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatggg 432 |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 5982858 atggtgtggctgctggttattgcctgtcagcatccctgctctccattatcaacaaatggg 5982799 Query: 433 caatcatgaaattcccgtaccc 454 || |||||||||| || ||||| Sbjct: 5982798 cagtcatgaaatttccataccc 5982777
>gb|AC135158.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1193C08, complete sequence Length = 111961 Score = 155 bits (78), Expect = 1e-34 Identities = 171/202 (84%) Strand = Plus / Minus Query: 253 agatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgctc 312 |||||||| ||| || |||||||| ||||||| | | ||||| ||| ||| |||||| Sbjct: 41513 agatgtctaatctatcagagccctcaaaagaagctgcatcagctgatgattcaagtgctg 41454 Query: 313 tccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgt 372 |||| ||||||||||||||||||| || |||| || |||| | || ||||||||||| | Sbjct: 41453 tccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaagcttcagtct 41394 Query: 373 atggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatggg 432 |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 41393 atggtgtggctgctggttattgcctgtcagcatccctgctctccattatcaacaaatggg 41334 Query: 433 caatcatgaaattcccgtaccc 454 || |||||||||| || ||||| Sbjct: 41333 cagtcatgaaatttccataccc 41312
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 155 bits (78), Expect = 1e-34 Identities = 171/202 (84%) Strand = Plus / Minus Query: 253 agatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgctc 312 |||||||| ||| || |||||||| ||||||| | | ||||| ||| ||| |||||| Sbjct: 5982191 agatgtctaatctatcagagccctcaaaagaagctgcatcagctgatgattcaagtgctg 5982132 Query: 313 tccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgt 372 |||| ||||||||||||||||||| || |||| || |||| | || ||||||||||| | Sbjct: 5982131 tccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaagcttcagtct 5982072 Query: 373 atggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatggg 432 |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 5982071 atggtgtggctgctggttattgcctgtcagcatccctgctctccattatcaacaaatggg 5982012 Query: 433 caatcatgaaattcccgtaccc 454 || |||||||||| || ||||| Sbjct: 5982011 cagtcatgaaatttccataccc 5981990
>dbj|AK068345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151N10, full insert sequence Length = 1837 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Plus Query: 270 gagccctcgaaagaaggttcgtcagccaatggttcgagtgctctccaaaaaactggagca 329 |||||||| ||||||| | | ||||| ||| ||| |||||| |||| |||||||||||| Sbjct: 530 gagccctcaaaagaagctgcatcagctgatgattcaagtgctgtccagaaaactggagca 589 Query: 330 tggagtagcatattgagcactcttgtccagcaagcttcagtgtatggcttggctgttggt 389 ||||||| || |||| || |||| | || ||||||||||| ||||| |||||| |||| Sbjct: 590 tggagtaacacgttgaacattcttctgcaacaagcttcagtctatggtgtggctgctggt 649 Query: 390 tattgcctgtcagcatctttgctctccattatcaacaaatgggcaatcatgaaattcccg 449 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || Sbjct: 650 tattgcctgtcagcatccctgctctccattatcaacaaatgggcagtcatgaaatttcca 709 Query: 450 taccc 454 ||||| Sbjct: 710 taccc 714
>dbj|AK067049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A05, full insert sequence Length = 2159 Score = 153 bits (77), Expect = 6e-34 Identities = 158/185 (85%) Strand = Plus / Plus Query: 270 gagccctcgaaagaaggttcgtcagccaatggttcgagtgctctccaaaaaactggagca 329 |||||||| ||||||| | | ||||| ||| ||| |||||| |||| |||||||||||| Sbjct: 638 gagccctcaaaagaagctgcatcagctgatgtttcaagtgctgtccagaaaactggagca 697 Query: 330 tggagtagcatattgagcactcttgtccagcaagcttcagtgtatggcttggctgttggt 389 ||||||| || |||| || |||| | || ||||||||||| ||||| |||||| |||| Sbjct: 698 tggagtaacacgttgaacattcttctgcaacaagcttcagtctatggtgtggctgctggt 757 Query: 390 tattgcctgtcagcatctttgctctccattatcaacaaatgggcaatcatgaaattcccg 449 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || Sbjct: 758 tattgcctgtcagcatccctgctctccattatcaacaaatgggcagtcatgaaatttcca 817 Query: 450 taccc 454 ||||| Sbjct: 818 taccc 822
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 147 bits (74), Expect = 4e-32 Identities = 170/202 (84%) Strand = Plus / Plus Query: 253 agatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgctc 312 |||||||| ||| || |||||||| ||||||| | |||||| | | ||| |||||| Sbjct: 2996777 agatgtctaatctatcagagccctcaaaagaagctgtgtcagctgacgattcaagtgctg 2996836 Query: 313 tccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgt 372 |||| ||||||||||||||||||| || |||| || |||| | || ||| ||||||| | Sbjct: 2996837 tccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaaacttcagtct 2996896 Query: 373 atggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatggg 432 |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 2996897 atggtgtggctgctggttattgcctgtcagcatctctgctctccattatcaacaaatggg 2996956 Query: 433 caatcatgaaattcccgtaccc 454 || |||||||||| || ||||| Sbjct: 2996957 cagtcatgaaatttccttaccc 2996978
>dbj|AP005896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0032C09 Length = 127263 Score = 147 bits (74), Expect = 4e-32 Identities = 170/202 (84%) Strand = Plus / Plus Query: 253 agatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgctc 312 |||||||| ||| || |||||||| ||||||| | |||||| | | ||| |||||| Sbjct: 42888 agatgtctaatctatcagagccctcaaaagaagctgtgtcagctgacgattcaagtgctg 42947 Query: 313 tccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgt 372 |||| ||||||||||||||||||| || |||| || |||| | || ||| ||||||| | Sbjct: 42948 tccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaaacttcagtct 43007 Query: 373 atggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatggg 432 |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 43008 atggtgtggctgctggttattgcctgtcagcatctctgctctccattatcaacaaatggg 43067 Query: 433 caatcatgaaattcccgtaccc 454 || |||||||||| || ||||| Sbjct: 43068 cagtcatgaaatttccttaccc 43089
>dbj|AP007224.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0463E12 Length = 161081 Score = 147 bits (74), Expect = 4e-32 Identities = 170/202 (84%) Strand = Plus / Plus Query: 253 agatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgctc 312 |||||||| ||| || |||||||| ||||||| | |||||| | | ||| |||||| Sbjct: 122416 agatgtctaatctatcagagccctcaaaagaagctgtgtcagctgacgattcaagtgctg 122475 Query: 313 tccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgt 372 |||| ||||||||||||||||||| || |||| || |||| | || ||| ||||||| | Sbjct: 122476 tccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaaacttcagtct 122535 Query: 373 atggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatggg 432 |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 122536 atggtgtggctgctggttattgcctgtcagcatctctgctctccattatcaacaaatggg 122595 Query: 433 caatcatgaaattcccgtaccc 454 || |||||||||| || ||||| Sbjct: 122596 cagtcatgaaatttccttaccc 122617
>dbj|AK102276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089D19, full insert sequence Length = 3823 Score = 147 bits (74), Expect = 4e-32 Identities = 170/202 (84%) Strand = Plus / Plus Query: 253 agatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgctc 312 |||||||| ||| || |||||||| ||||||| | |||||| | | ||| |||||| Sbjct: 154 agatgtctaatctatcagagccctcaaaagaagctgtgtcagctgacgattcaagtgctg 213 Query: 313 tccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgt 372 |||| ||||||||||||||||||| || |||| || |||| | || ||| ||||||| | Sbjct: 214 tccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaaacttcagtct 273 Query: 373 atggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatggg 432 |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 274 atggtgtggctgctggttattgcctgtcagcatctctgctctccattatcaacaaatggg 333 Query: 433 caatcatgaaattcccgtaccc 454 || |||||||||| || ||||| Sbjct: 334 cagtcatgaaatttccttaccc 355
>dbj|AK071490.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096O12, full insert sequence Length = 2568 Score = 145 bits (73), Expect = 1e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 253 agatgtctgatccctcggagccctcgaaagaaggttcgtcagccaatggttcgagtgctc 312 |||||||| ||| || |||||||| ||||||| | |||||| | | ||| |||||| Sbjct: 148 agatgtctaatctatcagagccctcaaaagaagctgtgtcagctgacgattcaagtgctg 207 Query: 313 tccaaaaaactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgt 372 |||| ||||||||||||||||||| || |||| || |||| | || ||| ||||||| | Sbjct: 208 tccagaaaactggagcatggagtaacacgttgaacattcttctgcaacaaacttcagtct 267 Query: 373 atggcttggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatggg 432 |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 268 atggtgtggctgctggttattgcctgtcagcatctctgctctccattatcaacaaatggg 327 Query: 433 caatcatgaaatt 445 || |||||||||| Sbjct: 328 cagtcatgaaatt 340
>gb|AY104246.1| Zea mays PCO107465 mRNA sequence Length = 1236 Score = 83.8 bits (42), Expect = 5e-13 Identities = 105/126 (83%) Strand = Plus / Plus Query: 320 aactggagcatggagtagcatattgagcactcttgtccagcaagcttcagtgtatggctt 379 ||||||||| ||||||| ||| |||| ||||||| | |||||||| ||| | ||||| | Sbjct: 173 aactggagcctggagtaacatgttgaacactcttatgcagcaagcctcaatctatggtgt 232 Query: 380 ggctgttggttattgcctgtcagcatctttgctctccattatcaacaaatgggcaatcat 439 ||||| ||| ||||| | ||||| || ||||||| || |||||||||||||||||||| Sbjct: 233 ggctgctgggtattgtttatcagcgtcgctgctctcgatcatcaacaaatgggcaatcat 292 Query: 440 gaaatt 445 |||||| Sbjct: 293 gaaatt 298
>gb|AC146755.23| Medicago truncatula clone mth2-15i15, complete sequence Length = 108159 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Minus Query: 365 ttcagtgtatggcttggctgttggttattgcctgtcagcatctttgctctccattatcaa 424 ||||||||||||| | |||| |||||| || | || ||||||||||| || |||||||| Sbjct: 73495 ttcagtgtatggcgttgctgctggttactgtttatctgcatctttgctgtcaattatcaa 73436 Query: 425 caaatgggcaatcatgaaattcccgtaccc 454 ||||||||| ||||||||||| || ||||| Sbjct: 73435 caaatgggctatcatgaaatttccttaccc 73406
>ref|NM_106283.1| Arabidopsis thaliana unknown protein AT1G76340 mRNA, complete cds Length = 1352 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 360 caagcttcagtgtatggcttggctgttggttattgcctgtcagcatctttgctctccatt 419 |||||||| || ||||| | |||| |||||| || || ||||| ||| | ||||| || Sbjct: 94 caagcttctgtctatggtgtagctgctggttactgtctctcagcttctcttctctcaatc 153 Query: 420 atcaacaaatgggcaatcatgaa 442 ||||||||||||||||||||||| Sbjct: 154 atcaacaaatgggcaatcatgaa 176
>emb|AJ551326.1|ATH551326 Arabidopsis thaliana partial mRNA for GONST3 Golgi Nucleotide sugar transporter (At1g76340 gene) Length = 1119 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 360 caagcttcagtgtatggcttggctgttggttattgcctgtcagcatctttgctctccatt 419 |||||||| || ||||| | |||| |||||| || || ||||| ||| | ||||| || Sbjct: 94 caagcttctgtctatggtgtagctgctggttactgtctctcagcttctcttctctcaatc 153 Query: 420 atcaacaaatgggcaatcatgaa 442 ||||||||||||||||||||||| Sbjct: 154 atcaacaaatgggcaatcatgaa 176
>gb|AC152936.21| Medicago truncatula clone mth2-47n14, complete sequence Length = 130801 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 360 caagcttcagtgtatggcttggctgttggttattgcctgtcagcatctttgctctccatt 419 |||| |||||| ||||| | |||| ||||||||| | || || |||||| | || ||| Sbjct: 69556 caagtttcagtatatggtgttgctgctggttattgtttatctgcgtctttgttgtcaatt 69615 Query: 420 atcaacaaatgggcaatcatgaaattcccgtaccc 454 |||||||||||||| ||||||||||||| ||||| Sbjct: 69616 atcaacaaatgggctgtcatgaaattcccttaccc 69650
>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete sequence Length = 94487 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 360 caagcttcagtgtatggcttggctgttggttattgcctgtcagcatctttgctctccatt 419 |||||||| || ||||| | |||| |||||| || || ||||| ||| | ||||| || Sbjct: 69248 caagcttctgtctatggtgtagctgctggttactgtctctcagcttctcttctctcaatc 69307 Query: 420 atcaacaaatgggcaatcatgaa 442 ||||||||||||||||||||||| Sbjct: 69308 atcaacaaatgggcaatcatgaa 69330
>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence Length = 97554 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 360 caagcttcagtgtatggcttggctgttggttattgcctgtcagcatctttgctctccatt 419 |||||||| || ||||| | |||| |||||| || || ||||| ||| | ||||| || Sbjct: 92391 caagcttctgtctatggtgtagctgctggttactgtctctcagcttctcttctctcaatc 92332 Query: 420 atcaacaaatgggcaatcatgaa 442 ||||||||||||||||||||||| Sbjct: 92331 atcaacaaatgggcaatcatgaa 92309
>gb|AC120779.24| Mus musculus strain C57BL/6J clone rp23-194d11 map 17, complete sequence Length = 235634 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 390 tattgcctgtcagcatctttgctctccatt 419 |||||||||||||||||||| ||| ||||| Sbjct: 230391 tattgcctgtcagcatctttactcaccatt 230362
>gb|AC105304.24| Mus musculus strain C57BL/6J clone rp23-71k5 map 17, complete sequence Length = 229816 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 390 tattgcctgtcagcatctttgctctccatt 419 |||||||||||||||||||| ||| ||||| Sbjct: 132574 tattgcctgtcagcatctttactcaccatt 132603
>ref|XM_764671.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_511_40926_41777) partial mRNA Length = 852 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 caggcacaggcacaggcgcgg 228 ||||||||||||||||||||| Sbjct: 250 caggcacaggcacaggcgcgg 230
>emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, complete sequence Length = 137155 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 85 ggcgcccacctcccgcatcctctcc 109 |||||||||||||| |||||||||| Sbjct: 108986 ggcgcccacctcccacatcctctcc 109010
>ref|XM_479040.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1554 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 ccgccaccctcccgcagcctctcc 79 ||||||||||||||| |||||||| Sbjct: 306 ccgccaccctcccgctgcctctcc 329
>gb|BT017209.1| Zea mays clone EL01N0372B02.c mRNA sequence Length = 1025 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gcggcgggagaggaaggagg 201 |||||||||||||||||||| Sbjct: 54 gcggcgggagaggaaggagg 73
>gb|AC161502.9| Mus musculus chromosome 1, clone RP23-33E21, complete sequence Length = 215417 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cctcccgcagcctctcctcc 82 |||||||||||||||||||| Sbjct: 95567 cctcccgcagcctctcctcc 95548
>gb|AC158767.3| Mus musculus chromosome 1, clone RP24-128E5, complete sequence Length = 188758 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccgccaccctcccgcagc 73 |||||||||||||||||||| Sbjct: 14777 cgccgccaccctcccgcagc 14796
>gb|AC102110.8| Mus musculus chromosome 1, clone RP23-122M2, complete sequence Length = 213732 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cctcccgcagcctctcctcc 82 |||||||||||||||||||| Sbjct: 99091 cctcccgcagcctctcctcc 99110
>gb|AC010993.13| Drosophila melanogaster clone BACR27O05, complete sequence Length = 193526 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 7824 ccaggcacaggcacaggcgc 7805
>ref|XM_428012.1| PREDICTED: Gallus gallus similar to leucine-rich repeat-containing 10; leucine-rich repeat protein; leucine-rich containing 10 (LOC430454), mRNA Length = 747 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctcccgcagcctctcctccc 83 |||||||||||||||||||| Sbjct: 717 ctcccgcagcctctcctccc 698
>ref|XM_415384.1| PREDICTED: Gallus gallus similar to G protein-coupled receptor 144; G-protein coupled receptor GPR144 (LOC417099), mRNA Length = 921 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 tgtcagcatctttgctctcc 416 |||||||||||||||||||| Sbjct: 216 tgtcagcatctttgctctcc 197
>ref|XM_595552.2| PREDICTED: Bos taurus similar to G protein-regulated inducer of neurite outgrowth 1 (LOC517383), mRNA Length = 3141 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 cccgcgccgccaccccccgc 40 |||||||||||||||||||| Sbjct: 2974 cccgcgccgccaccccccgc 2993
>ref|NM_010515.1| Mus musculus insulin-like growth factor 2 receptor (Igf2r), mRNA Length = 8877 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 7739 gcccacctcccccatcctctcccc 7716
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gtggcggctacctggcagcg 161 |||||||||||||||||||| Sbjct: 3873777 gtggcggctacctggcagcg 3873758
>gb|AC149896.2| Xenopus tropicalis clone ISB-278O7, complete sequence Length = 74579 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cctcccgcagcctctcctcc 82 |||||||||||||||||||| Sbjct: 1488 cctcccgcagcctctcctcc 1507
>gb|BC043457.1| Mus musculus insulin-like growth factor 2 receptor, mRNA (cDNA clone IMAGE:5030937), partial cds Length = 2295 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 1984 gcccacctcccccatcctctcccc 1961
>gb|BC031190.1| Mus musculus insulin-like growth factor 2 receptor, mRNA (cDNA clone IMAGE:5025787), partial cds Length = 3108 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 2789 gcccacctcccccatcctctcccc 2766
>ref|XM_983234.1| PREDICTED: Mus musculus X Kell blood group precursor related family member 4 (Xkr4), mRNA Length = 2556 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cctcccgcagcctctcctcc 82 |||||||||||||||||||| Sbjct: 467 cctcccgcagcctctcctcc 448
>ref|XM_977124.1| PREDICTED: Mus musculus hypothetical protein LOC665465 (LOC665465), mRNA Length = 639 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccgccaccctcccgcagc 73 |||||||||||||||||||| Sbjct: 333 cgccgccaccctcccgcagc 352
>gb|AC123832.4| Mus musculus BAC clone RP24-126O19 from chromosome 9, complete sequence Length = 181337 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cctcccgcagcctctcctcc 82 |||||||||||||||||||| Sbjct: 121932 cctcccgcagcctctcctcc 121951
>gb|BC055018.1| Mus musculus insulin-like growth factor 2 receptor, mRNA (cDNA clone IMAGE:4485795), partial cds Length = 2294 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 1989 gcccacctcccccatcctctcccc 1966
>emb|CR733177.1| Gallus gallus finished cDNA, clone ChEST242a9 Length = 960 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cagcctctcctccccggcgc 89 |||||||||||||||||||| Sbjct: 138 cagcctctcctccccggcgc 119
>gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, complete sequence Length = 232275 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tattgcctgtcagcatcttt 409 |||||||||||||||||||| Sbjct: 171708 tattgcctgtcagcatcttt 171727
>gb|AC157942.7| Mus musculus BAC clone RP24-118E2 from chromosome 13, complete sequence Length = 173717 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tattgcctgtcagcatcttt 409 |||||||||||||||||||| Sbjct: 133561 tattgcctgtcagcatcttt 133580
>emb|AL390056.7| Human DNA sequence from clone RP3-493I16 on chromosome 6 Contains the 5' end of the RAB3IP2 gene for RAB3 interacting protein 2 and a CpG island, complete sequence Length = 62390 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 caggcagaggcgcggcgggagagg 194 ||||| |||||||||||||||||| Sbjct: 25666 caggcggaggcgcggcgggagagg 25643
>emb|AL109840.24|HSJ543J19 Human DNA sequence from clone RP4-543J19 on chromosome 20 Contains the 3' end of the GNAS complex locus, the CTSZ gene for cathepsin Z, the ATP5E gene for ATP synthase (H+ transporting, mitochondrial F1 complex, epsilon subunit), the TH1L gene for TH1-like (Drosophila), the gene for tubulin beta 1 class VI (TUBB1), the C20orf45 gene encoding the CGI-107 protein (LOC51012) and four CpG islands, complete sequence Length = 142094 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 attatcaacaaatgggcaatcatg 440 |||||||||||| ||||||||||| Sbjct: 66188 attatcaacaaacgggcaatcatg 66211
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 cccgcagcctctcctccccg 85 |||||||||||||||||||| Sbjct: 77301 cccgcagcctctcctccccg 77282
>emb|AJ420900.1|PCI420900 Pycnoporus cinnabarinus partial mRNA for laccase (lcc3-1 gene) Length = 893 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gggacgaccaggcacaggca 219 |||||||||||||||||||| Sbjct: 642 gggacgaccaggcacaggca 623
>gb|AC129908.4| Homo sapiens chromosome 18, clone RP11-1147P1, complete sequence Length = 190809 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 gttccaggcacaggcgcagcaaga 255 ||||||||||||||||||| |||| Sbjct: 34342 gttccaggcacaggcgcagaaaga 34365
>gb|AC023697.5| Drosophila melanogaster X BAC RP98-13N3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171751 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 116810 ccaggcacaggcacaggcgc 116791
>ref|NM_012756.1| Rattus norvegicus insulin-like growth factor 2 receptor (Igf2r), mRNA Length = 8810 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 7679 gcccacctcccccatcctctcccc 7656
>ref|NM_167356.1| Drosophila melanogaster HDAC4 CG1770-RB, transcript variant B (HDAC4), mRNA Length = 6057 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 1342 ccaggcacaggcacaggcgc 1361
>ref|NM_132640.2| Drosophila melanogaster HDAC4 CG1770-RA, transcript variant A (HDAC4), mRNA Length = 5998 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 1295 ccaggcacaggcacaggcgc 1314
>ref|NM_001014736.1| Drosophila melanogaster HDAC4 CG1770-RC, transcript variant C (HDAC4), mRNA Length = 5734 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 1031 ccaggcacaggcacaggcgc 1050
>gb|AY644391.1| Mus musculus molossinus insulin-like growth factor 2 receptor mRNA, partial cds Length = 627 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 537 gcccacctcccccatcctctcccc 514
>emb|AJ767064.1| Burkholderia multivorans slyB operon Length = 2854 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gtcagcatctttgctctcca 417 |||||||||||||||||||| Sbjct: 1549 gtcagcatctttgctctcca 1530
>gb|AC119212.15| Mus musculus chromosome 1, clone RP24-192L21, complete sequence Length = 174380 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cgccgccaccctcccgcagc 73 |||||||||||||||||||| Sbjct: 157477 cgccgccaccctcccgcagc 157496
>gb|AF391757.1|AF391757 Mus musculus homeodomain protein RINX (Rinx) gene, complete cds Length = 16315 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctcccgcagcctctcctccc 83 |||||||||||||||||||| Sbjct: 6033 ctcccgcagcctctcctccc 6052
>dbj|AK088699.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430024A06 product:insulin-like growth factor 2 receptor, full insert sequence Length = 4289 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 4009 gcccacctcccccatcctctcccc 3986
>dbj|AK053045.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930033G02 product:insulin-like growth factor 2 receptor, full insert sequence Length = 3356 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 2375 gcccacctcccccatcctctcccc 2352
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tagctgcgggtggcggctac 152 |||||||||||||||||||| Sbjct: 15875461 tagctgcgggtggcggctac 15875442
>gb|AC144940.5| Mus musculus BAC clone RP23-429A10 from chromosome 9, complete sequence Length = 213669 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cctcccgcagcctctcctcc 82 |||||||||||||||||||| Sbjct: 416 cctcccgcagcctctcctcc 435
>gb|AC010102.3|AC010102 Homo sapiens BAC clone RP11-486B15 from 2, complete sequence Length = 230827 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 attatcaacaaatgggcaatcatg 440 |||||||||||| ||||||||||| Sbjct: 63372 attatcaacaaacgggcaatcatg 63395
>gb|AF538714.1| Drosophila melanogaster histone deacetylase dHDAC4 isoform b (HDAC4b) mRNA, complete cds Length = 4084 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 1187 ccaggcacaggcacaggcgc 1206
>gb|AF538713.1| Drosophila melanogaster histone deacetylase dHDAC4 isoform a (HDAC4a) mRNA, complete cds Length = 4583 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 1031 ccaggcacaggcacaggcgc 1050
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 acgaccaggcagaggcgcggcggg 189 |||| ||||||||||||||||||| Sbjct: 1523972 acgagcaggcagaggcgcggcggg 1523995
>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012O03 Length = 141860 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tagctgcgggtggcggctac 152 |||||||||||||||||||| Sbjct: 55504 tagctgcgggtggcggctac 55485
>gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complete sequence Length = 190003 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tattgcctgtcagcatcttt 409 |||||||||||||||||||| Sbjct: 143582 tattgcctgtcagcatcttt 143563
>emb|CT030636.13| Mouse DNA sequence from clone RP23-432O2 on chromosome 17, complete sequence Length = 204320 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 63487 gcccacctcccccatcctctcccc 63510
>gb|AC116804.22| Mus musculus chromosome 17, clone RP24-343C24, complete sequence Length = 186153 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 89306 gcccacctcccccatcctctcccc 89329
>gb|AE003492.3| Drosophila melanogaster chromosome X, section 44 of 74 of the complete sequence Length = 296756 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 9446 ccaggcacaggcacaggcgc 9427
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 cgacgaccaggcagaggcgc 183 |||||||||||||||||||| Sbjct: 1161296 cgacgaccaggcagaggcgc 1161315
>gb|AC167817.4| Mus musculus BAC clone RP23-146N9 from chromosome 17, complete sequence Length = 213670 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 156854 gcccacctcccccatcctctcccc 156877
>gb|AC140328.3| Mus musculus BAC clone RP23-404L15 from 8, complete sequence Length = 194350 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctcccgcagcctctcctccc 83 |||||||||||||||||||| Sbjct: 101191 ctcccgcagcctctcctccc 101210
>gb|AY850992.1| Drosophila virilis strain A11 daughter of sevenless (dos) gene, partial cds Length = 1598 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccaggcacaggcacaggcgc 226 |||||||||||||||||||| Sbjct: 732 ccaggcacaggcacaggcgc 751
>gb|AC118547.41| Mus musculus strain C57BL/6J clone rp23-3g4 map 17, complete sequence Length = 234061 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 6986 gcccacctcccccatcctctcccc 6963
>gb|U59809.1|RNU59809 Rattus norvegicus mannose 6-phosphate/insulin-like growth factor II receptor (M6P/IGF2r) mRNA, complete cds Length = 8810 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 7679 gcccacctcccccatcctctcccc 7656
>emb|AL845174.4| Mouse DNA sequence from clone RP23-156P22 on chromosome 2, complete sequence Length = 216475 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctcccgcagcctctcctccc 83 |||||||||||||||||||| Sbjct: 132779 ctcccgcagcctctcctccc 132760
>emb|AL669952.8| Mouse DNA sequence from clone RP23-154A15 on chromosome 4, complete sequence Length = 183213 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tattgcctgtcagcatcttt 409 |||||||||||||||||||| Sbjct: 115686 tattgcctgtcagcatcttt 115667
>gb|L22143.1|MUSINSUL48 Mouse insulin-like growth factor II/cation independent mannose 6-phosphate receptor gene, exon 48 and complete cds Length = 1879 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 575 gcccacctcccccatcctctcccc 552
>gb|M97300.1|MUSINGRII Mouse insulin-like growth factor II receptor Length = 1328 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 272 gcccacctcccccatcctctcccc 249
>gb|U04710.1|MMU04710 Mus musculus domesticus C57 Black 6 x CBA cation-independent mannose 6-phosphate/insulin-like growth factor II receptor precursor mRNA, complete cds Length = 8877 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 gcccacctcccgcatcctctcccc 111 ||||||||||| |||||||||||| Sbjct: 7739 gcccacctcccccatcctctcccc 7716
>emb|AL671392.5| Human DNA sequence from clone XXbac-92L3 on chromosome 6, complete sequence Length = 62014 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 caggcagaggcgcggcgggagagg 194 ||||| |||||||||||||||||| Sbjct: 26834 caggcggaggcgcggcgggagagg 26857 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,020,206 Number of Sequences: 3902068 Number of extensions: 4020206 Number of successful extensions: 91180 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90704 Number of HSP's gapped (non-prelim): 476 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)