ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58d12 |
|---|---|
| Clone Library Name | barley_pub |
>ATPO_IPOBA (P22778) ATP synthase delta chain, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 244 Score = 94.4 bits (233), Expect = 1e-19 Identities = 57/139 (41%), Positives = 74/139 (53%), Gaps = 11/139 (7%) Frame = +1 Query: 79 MAARHLRSGLPLLQARLAATESAAV-----------AQVSRGLATQVDKPAENKIKVPKA 225 M R G +LQ L++ + + +++ R AT E KIKVP Sbjct: 3 MTGRARSMGFSILQKALSSAQRSNAHRSILCPTLSNSELLRNYAT-ASASKEQKIKVPLT 61 Query: 226 LYGGTGNYXXXXXXXXXXXXXXEKVESEIGDVVGAVKKSPMFSQFIKDSSVPKATRVKAV 405 +YG +GNY EKVESE+ D+V A KKSP FSQF++D SVP TRV A+ Sbjct: 62 MYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAI 121 Query: 406 TEIFAEAKFSDITQNFLSV 462 EI A+AKF D TQNFL + Sbjct: 122 KEICAQAKFGDTTQNFLLI 140
>ATPO_ARATH (Q96251) ATP synthase delta chain, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 238 Score = 75.5 bits (184), Expect = 6e-14 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 5/131 (3%) Frame = +1 Query: 85 ARHLRSGLPLLQARLAATESAAVAQVSR---GLATQVDKPAEN--KIKVPKALYGGTGNY 249 A RSG+ + +A T+S + + L T A+ +KVP AL G GN+ Sbjct: 2 ANRFRSGISFFKT-IAVTDSVSSVRSKSLFPALRTYATASAQTTANVKVPIALVGENGNF 60 Query: 250 XXXXXXXXXXXXXXEKVESEIGDVVGAVKKSPMFSQFIKDSSVPKATRVKAVTEIFAEAK 429 EK+E+++ +++ A+K +P+F+QF KD SVP+ TR+ A+ + +AK Sbjct: 61 ASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAK 120 Query: 430 FSDITQNFLSV 462 F++ T+NFLS+ Sbjct: 121 FAEPTKNFLSL 131
>ATPO_BOVIN (P13621) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 52.0 bits (123), Expect = 8e-07 Identities = 29/112 (25%), Positives = 57/112 (50%) Frame = +1 Query: 127 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 306 +AA + ++Q R +T V +P ++ P +YG G Y E+VE Sbjct: 1 MAALAVSGLSQQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 60 Query: 307 EIGDVVGAVKKSPMFSQFIKDSSVPKATRVKAVTEIFAEAKFSDITQNFLSV 462 E+ V G + K P + + + V ++ +VK+++++ A+ KFS +T N +++ Sbjct: 61 ELLRV-GQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINL 111
>ATPO_RAT (Q06647) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 49.3 bits (116), Expect = 5e-06 Identities = 27/112 (24%), Positives = 56/112 (50%) Frame = +1 Query: 127 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 306 +AA ++ +++ R +T V +P ++ P +YG G Y ++VE Sbjct: 1 MAAPATSVLSRQVRSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEK 60 Query: 307 EIGDVVGAVKKSPMFSQFIKDSSVPKATRVKAVTEIFAEAKFSDITQNFLSV 462 E+ V G + K P S + + + ++ +VK++ +I + KFS +T N +++ Sbjct: 61 ELLRV-GQLLKDPKVSLAVLNPYIKRSIKVKSLKDITTKEKFSPLTANLMNL 111
>ATPO_MOUSE (Q9DB20) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 48.5 bits (114), Expect = 8e-06 Identities = 27/112 (24%), Positives = 54/112 (48%) Frame = +1 Query: 127 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 306 +AA ++ +++ R +T V +P ++ P +YG G Y ++VE Sbjct: 1 MAAPAASGLSRQVRSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEK 60 Query: 307 EIGDVVGAVKKSPMFSQFIKDSSVPKATRVKAVTEIFAEAKFSDITQNFLSV 462 E+ V G + K P S + + + + +VK++ +I KFS +T N +++ Sbjct: 61 ELLRV-GQLLKDPKVSLAVLNPYIKRTVKVKSLNDITKREKFSPLTANLMNL 111
>ATPO_HUMAN (P48047) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 46.6 bits (109), Expect = 3e-05 Identities = 27/112 (24%), Positives = 55/112 (49%) Frame = +1 Query: 127 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 306 +AA + +++ R +T V +P ++ P +YG G Y E+VE Sbjct: 1 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK 60 Query: 307 EIGDVVGAVKKSPMFSQFIKDSSVPKATRVKAVTEIFAEAKFSDITQNFLSV 462 E+ V + K P + + + V ++ +VK++ +I A+ +FS +T N +++ Sbjct: 61 ELLR-VAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINL 111
>ATPO_PONPY (Q5RD23) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 44.3 bits (103), Expect = 2e-04 Identities = 26/112 (23%), Positives = 54/112 (48%) Frame = +1 Query: 127 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 306 +A + +++ R +T V +P ++ P +YG G Y E+VE Sbjct: 1 MATPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK 60 Query: 307 EIGDVVGAVKKSPMFSQFIKDSSVPKATRVKAVTEIFAEAKFSDITQNFLSV 462 E+ V + K P + + + V ++ +VK++ +I A+ +FS +T N +++ Sbjct: 61 ELLRVA-QILKEPKVAAPVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINL 111
>ATPO_NEUCR (Q9P602) ATP synthase subunit 5, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) (ATP synthase chain 5) Length = 220 Score = 32.7 bits (73), Expect = 0.47 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Frame = +1 Query: 148 AVAQVSRGLATQVDK-----PAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVESEI 312 A+ + +R L TQV A +K+K P L+G G Y E I Sbjct: 6 ALLRPARVLNTQVRTYAAAAAASSKVKPPVTLFGLDGTYATALYTAAVKTSALEPTAKAI 65 Query: 313 GDVVGAVKKSPMFSQFIKDSSVPKATRVKAVTEIFAEAKFSDIT-QNFLS 459 + + K P + ++ ++ A + V E+ S+ T +NFL+ Sbjct: 66 SSLGNLLAKDPKLASILETPTLSPADKSAIVAELQKSVGVSNETVKNFLA 115
>ATPO_PEA (P17604) ATP synthase delta chain, mitochondrial (EC 3.6.3.14)| (Oligomycin sensitivity conferral protein) (OSCP) (Fragment) Length = 38 Score = 32.3 bits (72), Expect = 0.62 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +1 Query: 181 QVDKPAENKIKVPKALYGGTGNY 249 QV E KIKVP A++GG+GNY Sbjct: 2 QVPGZKETKIKVPIAMFGGSGNY 24
>ATPO_SCHPO (O74479) ATP synthase subunit 5, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) (ATP synthase chain 5) Length = 216 Score = 31.6 bits (70), Expect = 1.1 Identities = 17/82 (20%), Positives = 33/82 (40%) Frame = +1 Query: 217 PKALYGGTGNYXXXXXXXXXXXXXXEKVESEIGDVVGAVKKSPMFSQFIKDSSVPKATRV 396 P LYG G+Y + VE + + G +++ P F Q+I + + + Sbjct: 33 PVQLYGLDGSYASSLYTAAVKESKLDNVEKALNKLSGVLQQRPEFEQYISSPWLTREDKK 92 Query: 397 KAVTEIFAEAKFSDITQNFLSV 462 V+ + + +NF +V Sbjct: 93 ILVSSLTQMTGNEPLLKNFYNV 114
>KPTA_CLOPE (Q8XP22) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 183 Score = 29.3 bits (64), Expect = 5.2 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%) Frame = +1 Query: 118 QARLAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEK 297 + R + E + + ++G + +VD E IK PK LY GTG + Sbjct: 63 KGRYSFNEDKSKIRANQGHSIKVDLGLE-AIKPPKVLYHGTGR---------------KY 106 Query: 298 VESEIGDVVGAVKKSPMFSQFIKD----SSVPKATRVKAVTEIFAEAKFSDITQNFLS 459 +ES + + G +KK + KD S V K + E+ +E+ F D + +LS Sbjct: 107 IESILKN--GLIKKERQYVHLSKDIETASIVGKRHGDLVILEVDSESMFKDGIKFYLS 162
>POL_JSRV (P31623) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 870 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = -3 Query: 348 HRALLDCPYNIANLGFNFF--QRXCVGCCKEQRTSVVAGATIQSFWNLYLVLRRLIHLRR 175 H+ALL P + FN F VG + T + G T NL+ ++++++H R+ Sbjct: 500 HQALLTVPTS-----FNLFTDSSYVVGALQMIETVPIIGTTSPEVLNLFTLIQQVLHCRQ 554 Query: 174 KP 169 P Sbjct: 555 HP 556
>ASPM_BOVIN (P62285) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3371 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -3 Query: 273 CCKEQRTSVVAGATIQSFWNLYLVLRRLIHLR 178 C +E+R +VV IQS++ ++ LR+ IHLR Sbjct: 1393 CAQEERAAVV----IQSWYRMHRELRKYIHLR 1420
>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)| (Ubiquitin thioesterase 32) (Ubiquitin-specific-processing protease 32) (Deubiquitinating enzyme 32) (NY-REN-60 antigen) Length = 1604 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Frame = +3 Query: 210 KGSKSSVW--WHRQLR*CVVPCSSQRXFVGKS*IR-DW 314 K S W W+R R C + C R F+G + I DW Sbjct: 1162 KDGNSCAWCPWYRFCRGCKIDCGEDRAFIGNAYIAVDW 1199
>YQAJ_BACSU (P45907) Hypothetical protein yqaJ| Length = 319 Score = 28.9 bits (63), Expect = 6.8 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +1 Query: 190 KPAENKIK--VPKALYGGTGNYXXXXXXXXXXXXXXEKVESEIGDVVGAVKKSPMFSQF- 360 K EN+IK + A YG GNY +K++ + DV VKK F +F Sbjct: 255 KELENQIKHEMKDAEYGFIGNYQACWKPVVSNRIDTKKLKDQFPDVYEKVKKETHFRRFG 314 Query: 361 IKDSS 375 IK+ S Sbjct: 315 IKEVS 319
>PLFR_MOUSE (P04769) Proliferin-related protein precursor (PRP)| Length = 244 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 453 EILCDVRKLGFSEYFCYSLHPGCFWH**VLYELRKHRALLDCPYNI 316 E + DVRK F E+ LH W + + + + AL +CPY I Sbjct: 108 ETVEDVRKTSFEEFLKMVLHMLLAWKEPLKHLVTELSALPECPYRI 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.127 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,615,850 Number of Sequences: 219361 Number of extensions: 772050 Number of successful extensions: 1337 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1321 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1332 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
