ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart58d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF479044.1| Triticum aestivum F1-ATPase mRNA, partial cds 609 e-171
2gb|AY103884.1| Zea mays PCO090977 mRNA sequence 188 1e-44
3dbj|AK071267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 172 7e-40
5dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic D... 172 7e-40
6dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D... 172 7e-40
7dbj|AK101953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
8gb|BT016671.1| Zea mays clone Contig504 mRNA sequence 151 2e-33
9ref|XM_482388.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.10
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
11dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
12dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
13dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
14gb|AC140438.3| Mus musculus BAC clone RP24-106N10 from 12, compl... 44 0.40
15emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chr... 44 0.40
16gb|AC152103.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A1, compl... 42 1.6
17ref|XM_990488.1| PREDICTED: Mus musculus hypothetical protein LO... 42 1.6
18emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in... 42 1.6
19gb|AY442327.1| Homo sapiens Werner syndrome (WRN) gene, complete... 42 1.6
20emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chro... 42 1.6
21emb|AL354693.6| Human DNA sequence from clone RP11-14E8 on chrom... 42 1.6
22gb|AC009563.12| Homo sapiens chromosome 8, clone RP11-363L24, co... 42 1.6
23gb|AC092840.4| Homo sapiens BAC clone RP11-258O11 from 2, comple... 42 1.6
24emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 i... 42 1.6
25gb|AF181897.1|HSWRNG2 Homo sapiens WRN (WRN) gene, complete cds 42 1.6
26emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chr... 42 1.6
27emb|AL844172.8| Zebrafish DNA sequence from clone DKEY-223H12, c... 42 1.6
28gb|AY674178.1| Ixodes pacificus clone D12_IPL_P19 NPL-2 mRNA, co... 40 6.3
29emb|AL353764.9| Human DNA sequence from clone RP11-440G5 on chro... 40 6.3
30dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 6.3
31ref|XM_214018.3| PREDICTED: Rattus norvegicus hypothetical LOC28... 40 6.3
32emb|AL935269.7| Zebrafish DNA sequence from clone DKEY-46J18, co... 40 6.3
33gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 6.3
34emb|AL607070.19| Mouse DNA sequence from clone RP23-31C9 on chro... 40 6.3
35gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 6.3 
>gb|AF479044.1| Triticum aestivum F1-ATPase mRNA, partial cds
          Length = 555

 Score =  609 bits (307), Expect = e-171
 Identities = 396/426 (92%)
 Strand = Plus / Plus

                                                                       
Query: 35  ctcctcctaggtttcgctctccaccaccgcggaacgaaccggaaatggcggcgcggcacc 94
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   ctcctcctaggtttcgctccccaccaccgcggaacgaaccggaaatggcggcgcggcacc 67

                                                                       
Query: 95  tcagatccggcctcccgctcctccaagcccgcctcgcggccaccgaatccgcggccgtcg 154
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 68  tcagatccggcctcccgctcctccaagcccgcctcgcggctaacgaatccgcggccgtcg 127

                                                                       
Query: 155 ctcaggtatcaagggggcttgcgacgcaggtggataagcctgcggagaacaagataaagg 214
           ||||||| || ||||||||||| ||| ||| ||||||||||  |||||||||||| ||||
Sbjct: 128 ctcaggtgtcgagggggcttgcaacggaggcggataagcctaaggagaacaagatcaagg 187

                                                                       
Query: 215 ttccaaaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcagcag 274
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 188 ttccaaaagctctgtatggtggcacgggcaactacgctagtgcgttgttccttgcagcag 247

                                                                       
Query: 275 ccaacgcanattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcagtca 334
           ||||| || |||||||||||||||||||||| ||||||  ||||||||||||||||| ||
Sbjct: 248 ccaactcaaattcgttggaaaaagttgaatctgagattctcgatgttgtaggggcagcca 307

                                                                       
Query: 335 agaagagccctatgttttctcaattcataaaggactcatcagtgccaaaagcaaccaggg 394
           |||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||||||
Sbjct: 308 agaagagccctatgttttctcaattcatgaaggacacatcagtgcctaaagaaaccaggg 367

                                                                       
Query: 395 tgaaggctgtaacagaaatattcgctgaagccaagttttctgacatcacacagaatttct 454
           |||||||| |||| ||||||||| ||||||||  |||| ||||||||||| |||| ||||
Sbjct: 368 tgaaggctataactgaaatattctctgaagccgggtttactgacatcacaaagaaattct 427

                 
Query: 455 tgtctg 460
           ||||||
Sbjct: 428 tgtctg 433
to top
>gb|AY103884.1| Zea mays PCO090977 mRNA sequence
          Length = 1134

 Score =  188 bits (95), Expect = 1e-44
 Identities = 280/342 (81%)
 Strand = Plus / Plus

                                                                       
Query: 81  ggcggcgcggcacctcagatccggcctcccgctcctccaagcccgcctcgcggccaccga 140
           |||||||||||||||||||||||||||||| |||||||  |||| ||||||  || ||||
Sbjct: 127 ggcggcgcggcacctcagatccggcctccccctcctccgcgcccacctcgcatcctccga 186

                                                                       
Query: 141 atccgcggccgtcgctcaggtatcaagggggcttgcgacgcaggtggataagcctgcgga 200
           ||||||||||||||||||||| || |||||  | ||| ||||||  |  |||||  | | 
Sbjct: 187 atccgcggccgtcgctcaggtttcgaggggcttcgcgtcgcaggccgccaagcccaccgg 246

                                                                       
Query: 201 gaacaagataaaggttccaaaagctctgtatggtggcaccggcaactacgctagtgcgtt 260
           |||  |||| ||||||||||| ||||||| ||| ||||| |||||||| || |||||  |
Sbjct: 247 gaaggagatcaaggttccaaaggctctgtttggcggcacaggcaactatgccagtgcact 306

                                                                       
Query: 261 gttccttgcagcagccaacgcanattcgttggaaaaagttgaatccgagattggcgatgt 320
           ||||||  ||||||| ||  |  || | ||||| ||||||||||| ||||||   | | |
Sbjct: 307 gttcctcacagcagctaaatctaatgcattggacaaagttgaatctgagattaaagctat 366

                                                                       
Query: 321 tgtaggggcagtcaagaagagccctatgttttctcaattcataaaggactcatcagtgcc 380
           ||||| |||   ||||||||||||  ||||||||||||||||||||||||  ||||| ||
Sbjct: 367 tgtagaggcttccaagaagagcccgttgttttctcaattcataaaggacttgtcagttcc 426

                                                     
Query: 381 aaaagcaaccagggtgaaggctgtaacagaaatattcgctga 422
           |||||| ||||||||||||||| || | |||||||| |||||
Sbjct: 427 aaaagcgaccagggtgaaggctatagccgaaatatttgctga 468
to top
>dbj|AK071267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086I22, full
           insert sequence
          Length = 1044

 Score =  174 bits (88), Expect = 2e-40
 Identities = 210/251 (83%)
 Strand = Plus / Plus

                                                                       
Query: 211 aaggttccaaaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgca 270
           ||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||| ||
Sbjct: 253 aaggttccagaagctctgtatggtggcaccggcaactatgctagtgctctgttccttaca 312

                                                                       
Query: 271 gcagccaacgcanattcgttggaaaaagttgaatccgagattggcgatgttgtaggggca 330
           || ||||| ||  | | | |||| ||||||||| | |||||| |||||||||||| ||||
Sbjct: 313 gcggccaaagctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggca 372

                                                                       
Query: 331 gtcaagaagagccctatgttttctcaattcataaaggactcatcagtgccaaaagcaacc 390
             ||||||||| ||  |||||||||||||||| |||||||  |||||||| ||||  |||
Sbjct: 373 tccaagaagagtccattgttttctcaattcattaaggacttgtcagtgcccaaagagacc 432

                                                                       
Query: 391 agggtgaaggctgtaacagaaatattcgctgaagccaagttttctgacatcacacagaat 450
           |||||||||||  |||| ||||| |||||||||||    ||||| ||  ||||| |||||
Sbjct: 433 agggtgaaggcaataactgaaattttcgctgaagctggtttttcagatgtcacaaagaat 492

                      
Query: 451 ttcttgtctgt 461
           |||||| ||||
Sbjct: 493 ttcttggctgt 503



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 78  aatggcggcgcggcacctcagatccggcctcccgctcctcc 118
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 141 aatggcggcgcggcacctcagatccggcctccccctcctcc 181
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  172 bits (87), Expect = 7e-40
 Identities = 182/214 (85%)
 Strand = Plus / Plus

                                                                            
Query: 212      aggttccaaaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcag 271
                |||||||| |||||||||||||||||||||||||||| ||||||||  |||||||| |||
Sbjct: 26025462 aggttccagaagctctgtatggtggcaccggcaactatgctagtgctctgttccttacag 26025521

                                                                            
Query: 272      cagccaacgcanattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcag 331
                | ||||| ||  | | | |||| ||||||||| | |||||| |||||||||||| |||| 
Sbjct: 26025522 cggccaaagctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggcat 26025581

                                                                            
Query: 332      tcaagaagagccctatgttttctcaattcataaaggactcatcagtgccaaaagcaacca 391
                 ||||||||| ||  |||||||||||||||| |||||||  |||||||| ||||  ||||
Sbjct: 26025582 ccaagaagagtccattgttttctcaattcattaaggacttgtcagtgcccaaagagacca 26025641

                                                  
Query: 392      gggtgaaggctgtaacagaaatattcgctgaagc 425
                ||||||||||  |||| ||||| |||||||||||
Sbjct: 26025642 gggtgaaggcaataactgaaattttcgctgaagc 26025675



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                         
Query: 78       aatggcggcgcggcacctcagatccggcctcccgctcctcc 118
                ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 26024588 aatggcggcgcggcacctcagatccggcctccccctcctcc 26024628



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 93       cctcagatccggcctcccgctcctcc 118
                |||||||||||||||||| |||||||
Sbjct: 13638902 cctcagatccggcctccctctcctcc 13638877
to top
>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score =  172 bits (87), Expect = 7e-40
 Identities = 182/214 (85%)
 Strand = Plus / Plus

                                                                         
Query: 212   aggttccaaaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcag 271
             |||||||| |||||||||||||||||||||||||||| ||||||||  |||||||| |||
Sbjct: 63320 aggttccagaagctctgtatggtggcaccggcaactatgctagtgctctgttccttacag 63379

                                                                         
Query: 272   cagccaacgcanattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcag 331
             | ||||| ||  | | | |||| ||||||||| | |||||| |||||||||||| |||| 
Sbjct: 63380 cggccaaagctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggcat 63439

                                                                         
Query: 332   tcaagaagagccctatgttttctcaattcataaaggactcatcagtgccaaaagcaacca 391
              ||||||||| ||  |||||||||||||||| |||||||  |||||||| ||||  ||||
Sbjct: 63440 ccaagaagagtccattgttttctcaattcattaaggacttgtcagtgcccaaagagacca 63499

                                               
Query: 392   gggtgaaggctgtaacagaaatattcgctgaagc 425
             ||||||||||  |||| ||||| |||||||||||
Sbjct: 63500 gggtgaaggcaataactgaaattttcgctgaagc 63533



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                      
Query: 78    aatggcggcgcggcacctcagatccggcctcccgctcctcc 118
             ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 62446 aatggcggcgcggcacctcagatccggcctccccctcctcc 62486
to top
>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0062J02
          Length = 151636

 Score =  172 bits (87), Expect = 7e-40
 Identities = 182/214 (85%)
 Strand = Plus / Plus

                                                                        
Query: 212  aggttccaaaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgcag 271
            |||||||| |||||||||||||||||||||||||||| ||||||||  |||||||| |||
Sbjct: 4707 aggttccagaagctctgtatggtggcaccggcaactatgctagtgctctgttccttacag 4766

                                                                        
Query: 272  cagccaacgcanattcgttggaaaaagttgaatccgagattggcgatgttgtaggggcag 331
            | ||||| ||  | | | |||| ||||||||| | |||||| |||||||||||| |||| 
Sbjct: 4767 cggccaaagctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggcat 4826

                                                                        
Query: 332  tcaagaagagccctatgttttctcaattcataaaggactcatcagtgccaaaagcaacca 391
             ||||||||| ||  |||||||||||||||| |||||||  |||||||| ||||  ||||
Sbjct: 4827 ccaagaagagtccattgttttctcaattcattaaggacttgtcagtgcccaaagagacca 4886

                                              
Query: 392  gggtgaaggctgtaacagaaatattcgctgaagc 425
            ||||||||||  |||| ||||| |||||||||||
Sbjct: 4887 gggtgaaggcaataactgaaattttcgctgaagc 4920



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                     
Query: 78   aatggcggcgcggcacctcagatccggcctcccgctcctcc 118
            ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3833 aatggcggcgcggcacctcagatccggcctccccctcctcc 3873
to top
>dbj|AK101953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I24, full
            insert sequence
          Length = 2362

 Score =  167 bits (84), Expect = 4e-38
 Identities = 209/251 (83%)
 Strand = Plus / Plus

                                                                        
Query: 211  aaggttccaaaagctctgtatggtggcaccggcaactacgctagtgcgttgttccttgca 270
            ||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||| ||
Sbjct: 1607 aaggttccagaagctctgtatggtggcaccggcaactatgctagtgctctgttccttaca 1666

                                                                        
Query: 271  gcagccaacgcanattcgttggaaaaagttgaatccgagattggcgatgttgtaggggca 330
            || ||||| ||  | | | |||| ||||||||| | |||||| |||||||||||| ||||
Sbjct: 1667 gcggccaaagctaacttgctggacaaagttgaaactgagattcgcgatgttgtagaggca 1726

                                                                        
Query: 331  gtcaagaagagccctatgttttctcaattcataaaggactcatcagtgccaaaagcaacc 390
              ||||||||| ||  |||||||||||| ||| |||||||  |||||||| ||||  |||
Sbjct: 1727 tccaagaagagtccattgttttctcaatccattaaggacttgtcagtgcccaaagagacc 1786

                                                                        
Query: 391  agggtgaaggctgtaacagaaatattcgctgaagccaagttttctgacatcacacagaat 450
            |||||||||||  |||| ||||| |||||||||||    ||||| ||  ||||| |||||
Sbjct: 1787 agggtgaaggcaataactgaaattttcgctgaagctggtttttcagatgtcacaaagaat 1846

                       
Query: 451  ttcttgtctgt 461
            |||||| ||||
Sbjct: 1847 ttcttggctgt 1857



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                     
Query: 78   aatggcggcgcggcacctcagatccggcctcccgctcctcc 118
            ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1495 aatggcggcgcggcacctcagatccggcctccccctcctcc 1535
to top
>gb|BT016671.1| Zea mays clone Contig504 mRNA sequence
          Length = 1081

 Score =  151 bits (76), Expect = 2e-33
 Identities = 277/343 (80%), Gaps = 1/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 81  ggcggcgcggcac-ctcagatccggcctcccgctcctccaagcccgcctcgcggccaccg 139
           ||||||||||||| |||| | |||||||||| |||||||  |||| ||||||  || |||
Sbjct: 83  ggcggcgcggcactctcaaagccggcctccccctcctccgcgcccacctcgcatcctccg 142

                                                                       
Query: 140 aatccgcggccgtcgctcaggtatcaagggggcttgcgacgcaggtggataagcctgcgg 199
           |||||||||||||||||||||| || |||||  | ||| ||||||  |  |||||  | |
Sbjct: 143 aatccgcggccgtcgctcaggtttcgaggggcttcgcgtcgcaggccgccaagcccaccg 202

                                                                       
Query: 200 agaacaagataaaggttccaaaagctctgtatggtggcaccggcaactacgctagtgcgt 259
            |||  |||  ||||||||||| ||||||| ||| ||||| |||||||| || |||||  
Sbjct: 203 ggaaggagagcaaggttccaaaggctctgtttggcggcacaggcaactatgccagtgcac 262

                                                                       
Query: 260 tgttccttgcagcagccaacgcanattcgttggaaaaagttgaatccgagattggcgatg 319
           |||||||  ||||||| ||  |  || | ||||| ||||||||||| ||||||   | | 
Sbjct: 263 tgttcctcacagcagctaaatctaatgcattggacaaagttgaatctgagattaaagcta 322

                                                                       
Query: 320 ttgtaggggcagtcaagaagagccctatgttttctcaattcataaaggactcatcagtgc 379
           |||||| |||   ||||||||||||  ||||||||||||||||||||||||  ||||| |
Sbjct: 323 ttgtagaggcttccaagaagagcccgttgttttctcaattcataaaggacttgtcagttc 382

                                                      
Query: 380 caaaagcaaccagggtgaaggctgtaacagaaatattcgctga 422
           ||||||| ||||||||||||||| || | |||||||| |||||
Sbjct: 383 caaaagcgaccagggtgaaggctatagccgaaatatttgctga 425
to top
>ref|XM_482388.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 672

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 79  atggcggcgcggcacctcagatccggcctcc 109
           |||||||||||||||  ||||||||||||||
Sbjct: 349 atggcggcgcggcacgccagatccggcctcc 379
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 79       atggcggcgcggcacctcagatccggcctcc 109
                |||||||||||||||  ||||||||||||||
Sbjct: 19762794 atggcggcgcggcacgccagatccggcctcc 19762824
to top
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0007M04
          Length = 176293

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 79    atggcggcgcggcacctcagatccggcctcc 109
             |||||||||||||||  ||||||||||||||
Sbjct: 91745 atggcggcgcggcacgccagatccggcctcc 91775
to top
>dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021N09
          Length = 156565

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 93    cctcagatccggcctcccgctcctcc 118
             |||||||||||||||||| |||||||
Sbjct: 46235 cctcagatccggcctccctctcctcc 46210
to top
>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0459H02
          Length = 168230

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 93     cctcagatccggcctcccgctcctcc 118
              |||||||||||||||||| |||||||
Sbjct: 167392 cctcagatccggcctccctctcctcc 167367
to top
>gb|AC140438.3| Mus musculus BAC clone RP24-106N10 from 12, complete sequence
          Length = 154736

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 388   accagggtgaaggctgtaacag 409
             ||||||||||||||||||||||
Sbjct: 30956 accagggtgaaggctgtaacag 30935
to top
>emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chromosome 12, complete
             sequence
          Length = 214925

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 388   accagggtgaaggctgtaacag 409
             ||||||||||||||||||||||
Sbjct: 78220 accagggtgaaggctgtaacag 78199
to top
>gb|AC152103.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A1, complete sequence
          Length = 40624

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 47    ttcgctctccaccaccgcgga 67
             |||||||||||||||||||||
Sbjct: 19554 ttcgctctccaccaccgcgga 19574
to top
>ref|XM_990488.1| PREDICTED: Mus musculus hypothetical protein LOC667420 (LOC667420),
           mRNA
          Length = 507

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 111 gctcctccaagcccgcctcgcggcc 135
           ||||||||||||||| |||||||||
Sbjct: 269 gctcctccaagcccggctcgcggcc 245
to top
>emb|CR376773.7| Zebrafish DNA sequence from clone CH211-23E22 in linkage group 17,
              complete sequence
          Length = 167088

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 434    ctgacatcacacagaatttct 454
              |||||||||||||||||||||
Sbjct: 158055 ctgacatcacacagaatttct 158035
to top
>gb|AY442327.1| Homo sapiens Werner syndrome (WRN) gene, complete cds
          Length = 143624

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 344    ctatgttttctcaattcataa 364
              |||||||||||||||||||||
Sbjct: 133095 ctatgttttctcaattcataa 133075
to top
>emb|AL592044.4| Human DNA sequence from clone RP13-407F1 on chromosome 13, complete
              sequence
          Length = 236130

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 431    tttctgacatcacacagaatttctt 455
              |||||||||||| ||||||||||||
Sbjct: 170638 tttctgacatcatacagaatttctt 170614
to top
>emb|AL354693.6| Human DNA sequence from clone RP11-14E8 on chromosome 1 Contains the
             part of the EDARADD gene for EDAR-associated death domain
             and two CpG islands, complete sequence
          Length = 78986

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    cctcctccccgacccgatctc 34
             |||||||||||||||||||||
Sbjct: 24119 cctcctccccgacccgatctc 24099
to top
>gb|AC009563.12| Homo sapiens chromosome 8, clone RP11-363L24, complete sequence
          Length = 189944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 344    ctatgttttctcaattcataa 364
              |||||||||||||||||||||
Sbjct: 101499 ctatgttttctcaattcataa 101519
to top
>gb|AC092840.4| Homo sapiens BAC clone RP11-258O11 from 2, complete sequence
          Length = 133042

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 344    ctatgttttctcaattcataa 364
              |||||||||||||||||||||
Sbjct: 127281 ctatgttttctcaattcataa 127301
to top
>emb|BX004996.8| Zebrafish DNA sequence from clone CH211-268F23 in linkage group 6,
              complete sequence
          Length = 167320

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 434    ctgacatcacacagaatttct 454
              |||||||||||||||||||||
Sbjct: 134965 ctgacatcacacagaatttct 134945
to top
>gb|AF181897.1|HSWRNG2 Homo sapiens WRN (WRN) gene, complete cds
          Length = 87543

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 344   ctatgttttctcaattcataa 364
             |||||||||||||||||||||
Sbjct: 45123 ctatgttttctcaattcataa 45103
to top
>emb|AL928589.11| Mouse DNA sequence from clone RP23-350C1 on chromosome 2, complete
              sequence
          Length = 209053

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 111    gctcctccaagcccgcctcgcggcc 135
              ||||||||||||||| |||||||||
Sbjct: 181888 gctcctccaagcccggctcgcggcc 181912
to top
>emb|AL844172.8| Zebrafish DNA sequence from clone DKEY-223H12, complete sequence
          Length = 163195

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 355    caattcataaaggactcatca 375
              |||||||||||||||||||||
Sbjct: 126120 caattcataaaggactcatca 126100
to top
>gb|AY674178.1| Ixodes pacificus clone D12_IPL_P19 NPL-2 mRNA, complete cds
          Length = 237

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 133 gccaccgaatccgcggccgt 152
           ||||||||||||||||||||
Sbjct: 189 gccaccgaatccgcggccgt 170
to top
>emb|AL353764.9| Human DNA sequence from clone RP11-440G5 on chromosome 9 Contains the
             NFIL3 gene for interleukin 3 regulated nuclear factor, a
             novel gene and two CpG islands, complete sequence
          Length = 170898

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   atgttttctcaattcataaa 365
             ||||||||||||||||||||
Sbjct: 47439 atgttttctcaattcataaa 47420
to top
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     ccggaaatggcggcgcggca 92
              ||||||||||||||||||||
Sbjct: 346237 ccggaaatggcggcgcggca 346218
to top
>ref|XM_214018.3| PREDICTED: Rattus norvegicus hypothetical LOC289530 (predicted)
           (LOC289530), mRNA
          Length = 1163

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   ctcttcctcctccccgaccc 28
           ||||||||||||||||||||
Sbjct: 447 ctcttcctcctccccgaccc 466
to top
>emb|AL935269.7| Zebrafish DNA sequence from clone DKEY-46J18, complete sequence
          Length = 177658

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    cctcccgctcctccaagccc 124
              ||||||||||||||||||||
Sbjct: 175039 cctcccgctcctccaagccc 175020
to top
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    cgagattggcgatgttgtag 325
              ||||||||||||||||||||
Sbjct: 304271 cgagattggcgatgttgtag 304252
to top
>emb|AL607070.19| Mouse DNA sequence from clone RP23-31C9 on chromosome 4, complete
              sequence
          Length = 215106

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 220    aaagctctgtatggtggcaccggc 243
              |||||||||||||||| |||||||
Sbjct: 196174 aaagctctgtatggtgacaccggc 196197
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 73      ccggaaatggcggcgcggca 92
               ||||||||||||||||||||
Sbjct: 1274567 ccggaaatggcggcgcggca 1274586


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,449,272
Number of Sequences: 3902068
Number of extensions: 4449272
Number of successful extensions: 83211
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83008
Number of HSP's gapped (non-prelim): 196
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top